Wall clock time and date at job start Tue Mar 31 2020 10:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42109 * 108.57199 * 2 1 4 4 O 1.42099 * 108.57817 * 228.97602 * 2 1 3 5 5 C 1.81400 * 101.92244 * 114.48409 * 2 1 3 6 6 C 1.52995 * 109.46984 * 179.97438 * 5 2 1 7 7 C 1.52999 * 109.47458 * 180.02562 * 6 5 2 8 8 C 1.52995 * 109.47458 * 179.97438 * 7 6 5 9 9 O 1.42907 * 109.47187 * 180.02562 * 8 7 6 10 10 C 1.35900 * 117.00011 * 180.02562 * 9 8 7 11 11 C 1.38827 * 120.02115 * 359.72410 * 10 9 8 12 12 C 1.38189 * 120.07765 * 179.72294 * 11 10 9 13 13 C 1.38149 * 120.12438 * 0.55361 * 12 11 10 14 14 C 1.38890 * 120.03979 * 359.72018 * 13 12 11 15 15 O 1.35754 * 120.03567 * 179.97438 * 14 13 12 16 16 C 1.34836 * 116.99505 * 174.48878 * 15 14 13 17 17 H 1.08001 * 120.00214 * 5.05661 * 16 15 14 18 18 C 1.38659 * 119.99788 * 185.05604 * 16 15 14 19 19 N 1.31554 * 119.99670 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99953 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46852 * 60.00312 * 20 18 16 22 22 H 1.48502 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47269 * 300.00367 * 20 18 16 24 24 C 1.38571 * 120.01894 * 179.97438 * 10 9 8 25 25 H 1.09003 * 109.47094 * 305.50797 * 1 2 3 26 26 H 1.08995 * 109.47614 * 65.51254 * 1 2 3 27 27 H 1.08997 * 109.46511 * 185.51621 * 1 2 3 28 28 H 1.09002 * 109.46821 * 60.00780 * 5 2 1 29 29 H 1.08996 * 109.47302 * 300.00149 * 5 2 1 30 30 H 1.09002 * 109.47372 * 60.00525 * 6 5 2 31 31 H 1.09005 * 109.47356 * 300.00394 * 6 5 2 32 32 H 1.09002 * 109.47124 * 60.00048 * 7 6 5 33 33 H 1.09005 * 109.46887 * 300.00348 * 7 6 5 34 34 H 1.09002 * 109.47372 * 60.00192 * 8 7 6 35 35 H 1.08996 * 109.47272 * 299.99894 * 8 7 6 36 36 H 1.08005 * 119.95663 * 359.97438 * 11 10 9 37 37 H 1.08008 * 119.93521 * 180.25076 * 12 11 10 38 38 H 1.08003 * 119.97608 * 179.69786 * 13 12 11 39 39 H 0.97005 * 119.99481 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.06077 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3471 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6153 6 6 3.7055 -0.8194 1.7979 7 6 4.0217 -1.4404 3.1600 8 6 5.5384 -1.5249 3.3423 9 8 5.8337 -2.1055 4.6143 10 6 7.1459 -2.2526 4.9357 11 6 8.1292 -1.8513 4.0416 12 6 9.4639 -1.9951 4.3696 13 6 9.8239 -2.5489 5.5829 14 6 8.8444 -2.9573 6.4788 15 8 9.1983 -3.5020 7.6709 16 6 8.2033 -3.7714 8.5402 17 1 7.1744 -3.6301 8.2440 18 6 8.5013 -4.2299 9.8144 19 7 9.7547 -4.4015 10.1753 20 14 7.1230 -4.6025 11.0189 21 1 6.2441 -5.6579 10.4543 22 1 7.7016 -5.0740 12.3028 23 1 6.3278 -3.3713 11.2574 24 6 7.5032 -2.8081 6.1539 25 1 -0.3633 0.5969 0.8366 26 1 -0.3634 0.4259 -0.9352 27 1 -0.3632 -1.0229 0.0988 28 1 1.7612 -1.7369 1.6664 29 1 1.7611 -0.1170 2.4042 30 1 4.1336 0.1817 1.7465 31 1 4.1329 -1.4383 1.0088 32 1 3.5937 -2.4416 3.2110 33 1 3.5943 -0.8219 3.9493 34 1 5.9668 -0.5239 3.2912 35 1 5.9654 -2.1436 2.5531 36 1 7.8506 -1.4225 3.0903 37 1 10.2270 -1.6784 3.6739 38 1 10.8678 -2.6647 5.8347 39 1 9.9631 -4.7219 11.0668 40 1 6.7396 -3.1242 6.8491 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882993814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:04 Heat of formation + Delta-G solvation = -147.296092 kcal Electronic energy + Delta-G solvation = -22637.470932 eV Core-core repulsion = 18930.679125 eV Total energy + Delta-G solvation = -3706.791806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20834 -39.84709 -37.95605 -37.51552 -37.01753 -36.13888 -34.28384 -31.80915 -30.60437 -30.32557 -29.88449 -27.35266 -25.38889 -23.59570 -22.75165 -22.08326 -19.99896 -19.71505 -19.42659 -17.53624 -17.49452 -17.43379 -16.94147 -16.91423 -16.82179 -16.57613 -16.03831 -15.79407 -15.38221 -15.14024 -14.61271 -14.23609 -14.03157 -13.89677 -13.79413 -13.67098 -13.48831 -13.38114 -13.09203 -12.99520 -12.88600 -12.63424 -12.52234 -12.50396 -12.16444 -11.95121 -11.91291 -11.85846 -11.46904 -11.38441 -11.25380 -10.79471 -9.39374 -8.96331 -8.49088 -6.18430 -0.88200 0.56933 0.66968 1.34347 1.45458 1.50993 1.93454 2.15154 2.21371 2.79473 2.80445 3.13104 3.17273 3.47543 3.60764 3.81230 4.00154 4.09953 4.10367 4.15555 4.20628 4.27667 4.30143 4.42931 4.44872 4.59860 4.60380 4.69445 4.81613 4.95343 5.01206 5.02509 5.09581 5.10651 5.22580 5.41820 5.60668 5.64341 5.93568 6.00669 6.56733 6.95011 7.72256 8.73275 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002148 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.349899 B =13031.265118 C =14137.138348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.639 4.639 2 S 2.421 3.579 3 O -0.990 6.990 4 O -0.990 6.990 5 C -0.599 4.599 6 C -0.119 4.119 7 C -0.106 4.106 8 C 0.044 3.956 9 O -0.332 6.332 10 C 0.168 3.832 11 C -0.276 4.276 12 C -0.029 4.029 13 C -0.237 4.237 14 C 0.149 3.851 15 O -0.222 6.222 16 C -0.418 4.418 17 H 0.098 0.902 18 C -0.020 4.020 19 N -0.917 5.917 20 Si 1.019 2.981 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.285 4.285 25 H 0.153 0.847 26 H 0.133 0.867 27 H 0.153 0.847 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.119 0.881 39 H 0.274 0.726 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.976 8.477 -19.062 29.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.791 4.791 2 S 2.609 3.391 3 O -0.987 6.987 4 O -0.987 6.987 5 C -0.730 4.730 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.031 4.031 9 O -0.246 6.246 10 C 0.122 3.878 11 C -0.295 4.295 12 C -0.047 4.047 13 C -0.257 4.257 14 C 0.098 3.902 15 O -0.128 6.128 16 C -0.494 4.494 17 H 0.116 0.884 18 C -0.218 4.218 19 N -0.554 5.554 20 Si 0.838 3.162 21 H -0.182 1.182 22 H -0.193 1.193 23 H -0.183 1.183 24 C -0.305 4.305 25 H 0.171 0.829 26 H 0.152 0.848 27 H 0.171 0.829 28 H 0.179 0.821 29 H 0.179 0.821 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.172 0.828 37 H 0.180 0.820 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.221 8.613 -19.380 29.303 hybrid contribution -0.549 -0.518 1.245 1.456 sum -20.770 8.095 -18.135 28.736 Atomic orbital electron populations 1.30093 1.21922 1.13861 1.13245 1.07447 0.79887 0.74145 0.77591 1.93550 1.81077 1.36791 1.87313 1.93548 1.81070 1.67646 1.56458 1.30230 1.04302 1.16202 1.22232 1.21268 0.93020 1.03257 0.98148 1.21460 0.92290 1.03184 0.97519 1.23150 0.98361 0.98584 0.83008 1.85984 1.21918 1.78135 1.38582 1.18668 0.83191 0.93322 0.92583 1.21192 0.92771 1.13564 1.02010 1.20939 0.96326 0.93437 0.93968 1.20460 0.98075 1.10695 0.96428 1.19580 0.93000 0.90732 0.86899 1.83967 1.36415 1.70150 1.22313 1.21768 0.87760 1.46450 0.93385 0.88441 1.26601 1.00788 0.95996 0.98417 1.70171 1.19836 1.44422 1.20981 0.84655 0.75985 0.79497 0.76111 1.18189 1.19251 1.18257 1.20326 0.95839 1.15133 0.99236 0.82901 0.84837 0.82899 0.82104 0.82110 0.89758 0.89745 0.89971 0.89986 0.90924 0.90896 0.82819 0.82001 0.86262 0.91663 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.28 10.62 113.37 1.20 0.93 16 2 S 2.42 22.06 5.36 -56.49 -0.30 21.75 16 3 O -0.99 -18.24 18.10 -127.37 -2.31 -20.55 16 4 O -0.99 -18.21 18.10 -127.37 -2.31 -20.52 16 5 C -0.60 -2.89 5.81 71.98 0.42 -2.47 16 6 C -0.12 -1.36 5.22 30.59 0.16 -1.20 16 7 C -0.11 -1.62 5.58 30.59 0.17 -1.45 16 8 C 0.04 0.95 4.74 71.98 0.34 1.29 16 9 O -0.33 -10.93 10.13 -92.42 -0.94 -11.86 16 10 C 0.17 6.46 6.68 22.49 0.15 6.61 16 11 C -0.28 -8.95 9.04 22.40 0.20 -8.75 16 12 C -0.03 -0.96 10.03 22.24 0.22 -0.74 16 13 C -0.24 -10.24 9.99 22.41 0.22 -10.02 16 14 C 0.15 7.70 6.64 22.56 0.15 7.85 16 15 O -0.22 -13.67 9.76 -22.85 -0.22 -13.90 16 16 C -0.42 -24.94 9.49 67.92 0.64 -24.29 16 17 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 18 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 19 N -0.92 -56.49 13.67 21.61 0.30 -56.19 16 20 Si 1.02 43.35 29.55 68.60 2.03 45.38 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 24 C -0.29 -13.49 9.10 22.48 0.20 -13.29 16 25 H 0.15 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.15 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.16 -0.02 8.14 -2.39 -0.02 -0.03 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.07 1.42 7.67 -2.39 -0.02 1.41 16 35 H 0.07 1.42 7.65 -2.39 -0.02 1.40 16 36 H 0.15 3.71 6.29 -2.91 -0.02 3.69 16 37 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 39 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 40 H 0.12 5.79 5.64 -2.91 -0.02 5.78 16 Total: -1.00 -89.02 354.59 1.85 -87.17 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.04 Total: 14.93 kcal Atomic # 6 Polarization: -50.78 SS G_CDS: 4.56 Total: -46.22 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.30 Total: -56.19 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -5.77 Total: -66.82 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 22.06 SS G_CDS: -0.30 Total: 21.75 kcal Total: -89.02 1.85 -87.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882993814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.125 kcal (2) G-P(sol) polarization free energy of solvation -89.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds