Wall clock time and date at job start Tue Mar 31 2020 10:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 C 1.53012 * 109.47090 * 119.99697 * 2 1 3 5 5 N 1.46494 * 109.47163 * 177.67906 * 4 2 1 6 6 C 1.46501 * 119.99962 * 275.74454 * 5 4 2 7 7 C 1.50693 * 109.47295 * 284.49746 * 6 5 4 8 8 H 1.08002 * 120.00141 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00482 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99383 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00381 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46961 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47135 * 119.99389 * 11 9 7 14 14 H 1.48494 * 109.47218 * 239.99755 * 11 9 7 15 15 C 1.34783 * 120.00034 * 95.74458 * 5 4 2 16 16 O 1.21575 * 119.99625 * 6.64623 * 15 5 4 17 17 C 1.47622 * 119.99853 * 186.37327 * 15 5 4 18 18 C 1.40076 * 120.56045 * 326.77323 * 17 15 5 19 19 C 1.38239 * 118.33172 * 179.75945 * 18 17 15 20 20 C 1.38552 * 119.37317 * 0.52247 * 19 18 17 21 21 Cl 1.73595 * 119.45656 * 179.72072 * 20 19 18 22 22 N 1.32029 * 121.09384 * 359.73785 * 20 19 18 23 23 C 1.31940 * 121.82395 * 359.97438 * 22 20 19 24 24 F 1.35104 * 119.75202 * 180.02562 * 23 22 20 25 25 H 1.08993 * 109.47653 * 300.00005 * 1 2 3 26 26 H 1.08998 * 109.47031 * 60.00658 * 1 2 3 27 27 H 1.09009 * 109.46952 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47789 * 239.99586 * 2 1 3 29 29 H 1.08997 * 109.46992 * 65.11569 * 3 2 1 30 30 H 1.08998 * 109.46768 * 185.11207 * 3 2 1 31 31 H 1.08993 * 109.47052 * 305.11665 * 3 2 1 32 32 H 1.08999 * 109.46663 * 57.67794 * 4 2 1 33 33 H 1.08998 * 109.46767 * 297.67913 * 4 2 1 34 34 H 1.09001 * 109.47356 * 44.50160 * 6 5 4 35 35 H 1.09005 * 109.47016 * 164.49866 * 6 5 4 36 36 H 0.97005 * 119.99541 * 179.97438 * 10 9 7 37 37 H 1.07995 * 120.83514 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.31842 * 180.23913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5039 -0.7699 1.2218 6 6 4.1876 -1.8331 0.4813 7 6 4.1026 -3.1213 1.2585 8 1 3.5908 -3.1456 2.2093 9 6 4.6790 -4.2688 0.7565 10 7 5.3026 -4.2391 -0.4009 11 14 4.5730 -5.8658 1.7197 12 1 3.8236 -5.6344 2.9807 13 1 3.8690 -6.8890 0.9057 14 1 5.9424 -6.3433 2.0387 15 6 4.2217 0.1635 1.8776 16 8 3.6597 0.9729 2.5898 17 6 5.6906 0.1993 1.7358 18 6 6.4183 -0.9848 1.5607 19 6 7.7915 -0.8974 1.4277 20 6 8.4018 0.3453 1.4822 21 17 10.1268 0.4569 1.3227 22 7 7.6931 1.4460 1.6536 23 6 6.3801 1.4156 1.7799 24 9 5.6964 2.5679 1.9531 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.7533 1.9292 0.9322 30 1 3.1261 1.4438 -0.0916 31 1 1.6037 1.9821 -0.8406 32 1 1.6430 -1.7362 1.2704 33 1 1.7110 -0.1839 2.1388 34 1 3.7115 -1.9631 -0.4906 35 1 5.2340 -1.5624 0.3400 36 1 5.7085 -5.0464 -0.7540 37 1 5.9186 -1.9416 1.5260 38 1 8.3835 -1.7896 1.2873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906428775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:58 Heat of formation + Delta-G solvation = -50.582806 kcal Electronic energy + Delta-G solvation = -24676.736099 eV Core-core repulsion = 20880.926835 eV Total energy + Delta-G solvation = -3795.809264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.30227 -41.91060 -40.41415 -37.88167 -37.57592 -36.17648 -34.38522 -33.77309 -32.10163 -29.53327 -28.09291 -27.59942 -25.73328 -24.81981 -24.60584 -21.67540 -20.56556 -19.41274 -18.83954 -18.58267 -18.29911 -17.50795 -17.15164 -16.76741 -16.41143 -16.15109 -15.59785 -15.34852 -15.19809 -15.05783 -14.73989 -14.46739 -14.32147 -13.95749 -13.66435 -13.11892 -12.97081 -12.85746 -12.76894 -12.70671 -12.51264 -12.36718 -12.26056 -12.11615 -11.86857 -11.65164 -11.56696 -11.42745 -11.13085 -10.81277 -10.46061 -10.16941 -9.48520 -8.22894 -6.38906 -0.81106 -0.25265 0.36977 1.44164 1.50047 1.54652 1.59726 2.02254 2.28829 2.33685 2.44451 3.05520 3.25728 3.35234 3.64137 3.76196 3.94184 4.04174 4.17610 4.35833 4.58471 4.67213 4.71429 4.75376 4.78933 4.84815 4.91431 4.99739 5.05446 5.15604 5.20081 5.20363 5.38561 5.44353 5.64446 5.73973 5.96597 6.00210 6.46182 6.74409 7.10807 7.34314 8.81386 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.009239 B = 0.006567 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.968554 B = 4262.796019 C = 6747.597540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.131 4.131 4 C 0.120 3.880 5 N -0.580 5.580 6 C 0.220 3.780 7 C -0.552 4.552 8 H 0.058 0.942 9 C 0.038 3.962 10 N -0.903 5.903 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.559 3.441 16 O -0.571 6.571 17 C -0.214 4.214 18 C -0.007 4.007 19 C -0.159 4.159 20 C 0.222 3.778 21 Cl 0.006 6.994 22 N -0.532 5.532 23 C 0.361 3.639 24 F -0.099 7.099 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.022 0.978 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.019 0.981 35 H 0.062 0.938 36 H 0.272 0.728 37 H 0.200 0.800 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 4.013 -0.017 4.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.189 4.189 4 C -0.002 4.002 5 N -0.309 5.309 6 C 0.100 3.900 7 C -0.590 4.590 8 H 0.076 0.924 9 C -0.165 4.165 10 N -0.540 5.540 11 Si 0.776 3.224 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.346 3.654 16 O -0.453 6.453 17 C -0.221 4.221 18 C -0.032 4.032 19 C -0.180 4.180 20 C 0.058 3.942 21 Cl 0.035 6.965 22 N -0.250 5.250 23 C 0.206 3.794 24 F -0.078 7.078 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.217 0.783 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.243 5.151 0.221 5.623 hybrid contribution -0.266 -1.266 0.242 1.316 sum 1.978 3.886 0.463 4.384 Atomic orbital electron populations 1.21692 0.92422 1.02488 1.02597 1.21447 0.97590 0.95969 0.97696 1.21690 0.99225 0.96208 1.01750 1.21593 0.78544 1.01339 0.98712 1.48019 1.07253 1.26548 1.49044 1.20037 0.94251 0.84198 0.91548 1.21550 1.37028 0.94003 1.06387 0.92368 1.25511 0.94227 1.01309 0.95473 1.69993 1.35138 1.30338 1.18541 0.85622 0.78280 0.79751 0.78787 1.19827 1.20825 1.19828 1.17833 0.85934 0.81365 0.80244 1.90717 1.72200 1.41946 1.40393 1.20856 0.96069 0.93945 1.11261 1.23190 0.93743 1.00268 0.85988 1.22175 0.94767 0.98197 1.02822 1.21715 0.88452 0.88539 0.95501 1.98421 1.04508 1.98444 1.95128 1.66195 1.05968 1.33923 1.18884 1.17676 0.85553 0.81040 0.95098 1.91662 1.77261 1.47323 1.91551 0.92169 0.91192 0.91917 0.91868 0.93173 0.95830 0.91284 0.90123 0.90817 0.96274 0.92131 0.91821 0.78338 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.19 71.98 0.66 -2.48 16 2 C -0.11 -3.26 3.14 -10.79 -0.03 -3.30 16 3 C -0.13 -4.10 8.20 71.98 0.59 -3.51 16 4 C 0.12 4.26 4.97 86.38 0.43 4.69 16 5 N -0.58 -23.26 2.24 -829.81 -1.86 -25.12 16 6 C 0.22 9.44 4.71 85.63 0.40 9.84 16 7 C -0.55 -25.21 7.54 25.60 0.19 -25.02 16 8 H 0.06 2.75 7.81 -2.91 -0.02 2.72 16 9 C 0.04 1.74 5.45 84.66 0.46 2.20 16 10 N -0.90 -43.09 13.29 21.45 0.28 -42.81 16 11 Si 0.95 37.20 29.54 68.60 2.03 39.23 16 12 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 13 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 15 C 0.56 23.24 5.92 86.72 0.51 23.76 16 16 O -0.57 -25.67 14.98 -3.95 -0.06 -25.73 16 17 C -0.21 -8.26 5.54 -19.95 -0.11 -8.37 16 18 C -0.01 -0.25 7.55 22.72 0.17 -0.08 16 19 C -0.16 -4.68 9.85 22.34 0.22 -4.46 16 20 C 0.22 6.64 7.27 84.74 0.62 7.25 16 21 Cl 0.01 0.15 29.10 -2.72 -0.08 0.07 16 22 N -0.53 -18.44 10.33 -186.54 -1.93 -20.37 16 23 C 0.36 13.59 8.37 85.08 0.71 14.30 16 24 F -0.10 -3.89 16.10 44.97 0.72 -3.17 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.06 2.04 7.99 -2.39 -0.02 2.02 16 29 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16 30 H 0.02 0.82 6.96 -2.39 -0.02 0.81 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.84 7.92 -2.39 -0.02 2.82 16 33 H 0.07 2.66 7.19 -2.39 -0.02 2.65 16 34 H 0.02 0.89 7.99 -2.39 -0.02 0.87 16 35 H 0.06 2.62 3.73 -2.96 -0.01 2.61 16 36 H 0.27 12.35 8.31 -92.70 -0.77 11.58 16 37 H 0.20 7.85 3.95 -2.91 -0.01 7.83 16 38 H 0.19 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -52.51 335.16 5.03 -47.48 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.09 Total: 15.59 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 4.83 Total: 14.83 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -3.50 Total: -88.30 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.72 Total: -3.17 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -52.51 5.03 -47.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906428775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.102 kcal (2) G-P(sol) polarization free energy of solvation -52.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds