Wall clock time and date at job start Tue Mar 31 2020 10:13:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53000 * 109.47510 * 2 1
4 4 C 1.52998 * 109.47608 * 239.99606 * 2 1 3
5 5 C 1.50710 * 109.46775 * 60.00188 * 4 2 1
6 6 H 1.07994 * 119.99612 * 0.02562 * 5 4 2
7 7 C 1.37876 * 119.99680 * 180.02562 * 5 4 2
8 8 N 1.31505 * 120.00257 * 0.02562 * 7 5 4
9 9 Si 1.86801 * 119.99638 * 180.02562 * 7 5 4
10 10 H 1.48499 * 109.47237 * 359.97438 * 9 7 5
11 11 H 1.48494 * 109.47135 * 119.99875 * 9 7 5
12 12 H 1.48496 * 109.47197 * 240.00365 * 9 7 5
13 13 C 1.53010 * 109.47007 * 119.99800 * 2 1 3
14 14 N 1.46498 * 109.46962 * 300.00466 * 13 2 1
15 15 C 1.34778 * 119.99684 * 179.97438 * 14 13 2
16 16 O 1.21576 * 119.99923 * 359.97438 * 15 14 13
17 17 C 1.47623 * 119.99707 * 179.97438 * 15 14 13
18 18 C 1.40077 * 120.56661 * 0.24822 * 17 15 14
19 19 C 1.38237 * 118.33768 * 180.28593 * 18 17 15
20 20 C 1.38555 * 119.36919 * 359.73316 * 19 18 17
21 21 Cl 1.73598 * 119.45242 * 179.97438 * 20 19 18
22 22 N 1.32036 * 121.09521 * 359.97438 * 20 19 18
23 23 C 1.31933 * 121.82500 * 0.02562 * 22 20 19
24 24 F 1.35104 * 119.75122 * 180.02562 * 23 22 20
25 25 H 1.08997 * 109.47209 * 300.00003 * 1 2 3
26 26 H 1.08998 * 109.46410 * 60.00103 * 1 2 3
27 27 H 1.08998 * 109.46759 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.47496 * 179.97438 * 3 2 1
29 29 H 1.08997 * 109.47116 * 300.00372 * 3 2 1
30 30 H 1.09010 * 109.46981 * 59.99629 * 3 2 1
31 31 H 1.08994 * 109.47741 * 179.97438 * 4 2 1
32 32 H 1.09000 * 109.47076 * 300.00721 * 4 2 1
33 33 H 0.97005 * 120.00146 * 179.97438 * 8 7 5
34 34 H 1.08994 * 109.46922 * 179.97438 * 13 2 1
35 35 H 1.09000 * 109.46772 * 59.99833 * 13 2 1
36 36 H 0.96995 * 119.99913 * 359.97438 * 14 13 2
37 37 H 1.08004 * 120.83107 * 359.97438 * 18 17 15
38 38 H 1.07993 * 120.31812 * 179.74749 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 1.5378 -0.0109 -2.4797
6 1 0.9173 0.8674 -2.3806
7 6 1.8706 -0.4823 -3.7319
8 7 2.6258 -1.5521 -3.8525
9 14 1.2486 0.3987 -5.2572
10 1 0.4240 1.5657 -4.8531
11 1 2.4039 0.8645 -6.0655
12 1 0.4228 -0.5340 -6.0654
13 6 2.0400 -0.7213 1.2494
14 7 1.5516 -0.0306 2.4454
15 6 1.8767 -0.4914 3.6696
16 8 2.5750 -1.4804 3.7811
17 6 1.3850 0.2048 4.8749
18 6 0.5756 1.3423 4.7600
19 6 0.1459 1.9615 5.9189
20 6 0.5204 1.4404 7.1468
21 17 -0.0174 2.2168 8.6034
22 7 1.2796 0.3632 7.2275
23 6 1.7149 -0.2634 6.1512
24 9 2.4893 -1.3627 6.2825
25 1 -0.3633 0.5138 0.8899
26 1 -0.3632 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 3.1301 1.4425 0.0005
29 1 1.6768 1.9563 -0.8899
30 1 1.6767 1.9564 0.8900
31 1 3.1301 -0.7209 -1.2494
32 1 1.6767 -1.7489 -1.2491
33 1 2.8596 -1.8840 -4.7335
34 1 3.1300 -0.7216 1.2491
35 1 1.6766 -1.7489 1.2493
36 1 0.9942 0.7582 2.3564
37 1 0.2983 1.7288 3.7904
38 1 -0.4760 2.8429 5.8676
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000908212529.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:13:29
Heat of formation + Delta-G solvation = -60.298775 kcal
Electronic energy + Delta-G solvation = -23319.980604 eV
Core-core repulsion = 19523.750024 eV
Total energy + Delta-G solvation = -3796.230580 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.094 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-49.32308 -40.92918 -39.43363 -37.32844 -37.12440 -34.16667 -33.22720 -32.13249
-31.37499 -27.27630 -26.62543 -26.62518 -25.00223 -24.12111 -22.89159 -20.85251
-19.12751 -18.48604 -18.05439 -17.43584 -16.65077 -16.39444 -15.95082 -15.67564
-15.15558 -14.70885 -14.52696 -14.29019 -14.22030 -13.71266 -13.66836 -13.44600
-13.11053 -12.84840 -12.34059 -12.13099 -12.01291 -11.89315 -11.27129 -11.10042
-10.90402 -10.73492 -10.70579 -10.67694 -10.51140 -10.32460 -10.05858 -9.98159
-9.48717 -9.28206 -8.99270 -8.93145 -8.41750 -6.05384 -4.07102 -0.17005
0.36590 1.03331 2.39797 2.91144 3.14117 3.18840 3.26287 3.34804
3.36333 3.81049 4.11594 4.13175 4.40140 4.46132 4.94657 5.08134
5.17204 5.30168 5.36779 5.50759 5.62013 5.75065 6.03227 6.08780
6.15934 6.26734 6.35452 6.52590 6.60781 6.72157 6.94843 6.97864
7.01994 7.43095 7.57639 7.68640 7.92675 8.09135 8.33904 8.97795
9.56508 11.06024
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.029241 B = 0.002568 C = 0.002401
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 957.343759 B =10900.160045 C =11661.119423
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.073 4.073
3 C -0.128 4.128
4 C 0.035 3.965
5 C -0.512 4.512
6 H 0.060 0.940
7 C 0.056 3.944
8 N -0.893 5.893
9 Si 0.889 3.111
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.285 1.285
13 C 0.127 3.873
14 N -0.710 5.710
15 C 0.554 3.446
16 O -0.519 6.519
17 C -0.201 4.201
18 C -0.003 4.003
19 C -0.170 4.170
20 C 0.228 3.772
21 Cl -0.010 7.010
22 N -0.515 5.515
23 C 0.386 3.614
24 F -0.076 7.076
25 H 0.027 0.973
26 H 0.069 0.931
27 H 0.049 0.951
28 H 0.049 0.951
29 H 0.069 0.931
30 H 0.027 0.973
31 H 0.019 0.981
32 H 0.019 0.981
33 H 0.260 0.740
34 H 0.069 0.931
35 H 0.069 0.931
36 H 0.397 0.603
37 H 0.162 0.838
38 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.902 9.766 20.374 23.624
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.073 4.073
3 C -0.185 4.185
4 C -0.002 4.002
5 C -0.550 4.550
6 H 0.078 0.922
7 C -0.145 4.145
8 N -0.533 5.533
9 Si 0.717 3.283
10 H -0.198 1.198
11 H -0.211 1.211
12 H -0.211 1.211
13 C 0.005 3.995
14 N -0.362 5.362
15 C 0.338 3.662
16 O -0.396 6.396
17 C -0.208 4.208
18 C -0.029 4.029
19 C -0.191 4.191
20 C 0.063 3.937
21 Cl 0.019 6.981
22 N -0.232 5.232
23 C 0.232 3.768
24 F -0.054 7.054
25 H 0.046 0.954
26 H 0.088 0.912
27 H 0.068 0.932
28 H 0.068 0.932
29 H 0.088 0.912
30 H 0.046 0.954
31 H 0.038 0.962
32 H 0.038 0.962
33 H 0.070 0.930
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.233 0.767
37 H 0.180 0.820
38 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -6.086 8.619 21.230 23.707
hybrid contribution -0.642 0.905 -1.451 1.826
sum -6.728 9.524 19.779 22.961
Atomic orbital electron populations
1.21777 0.95188 1.01330 1.00221 1.20931 0.95527 0.95901 0.94968
1.21778 1.00717 0.95797 1.00220 1.19103 0.96457 0.95284 0.89375
1.21194 1.31284 1.12090 0.90454 0.92186 1.25015 0.95284 0.95066
0.99133 1.69967 1.36904 1.22962 1.23422 0.86592 0.78616 0.79666
0.83441 1.19803 1.21114 1.21120 1.21756 0.99290 0.96199 0.82266
1.46079 1.52783 1.31784 1.05532 1.17642 0.81329 0.84413 0.82815
1.90881 1.37132 1.25223 1.86392 1.21045 1.05141 1.00338 0.94315
1.21770 0.90410 0.90816 0.99922 1.21842 1.03896 1.03323 0.90086
1.21501 0.92982 0.90368 0.88836 1.98450 1.86832 1.76959 1.35856
1.66274 1.13896 1.09896 1.33152 1.17737 0.88234 0.83705 0.87167
1.91784 1.69866 1.47610 1.96187 0.95424 0.91237 0.93195 0.93198
0.91234 0.95433 0.96233 0.96230 0.93029 0.91267 0.91269 0.76665
0.82049 0.81936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16
2 C -0.07 -1.27 0.54 -154.50 -0.08 -1.35 16
3 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16
4 C 0.04 0.82 4.04 -27.88 -0.11 0.71 16
5 C -0.51 -13.03 7.65 -34.44 -0.26 -13.29 16
6 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16
7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16
8 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16
9 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16
10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
13 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16
14 N -0.71 -9.12 4.91 -61.32 -0.30 -9.42 16
15 C 0.55 7.83 7.77 -12.43 -0.10 7.73 16
16 O -0.52 -9.51 15.37 5.30 0.08 -9.42 16
17 C -0.20 -2.25 5.90 -104.76 -0.62 -2.87 16
18 C 0.00 -0.02 9.64 -38.89 -0.37 -0.40 16
19 C -0.17 -1.08 9.85 -39.46 -0.39 -1.47 16
20 C 0.23 2.04 7.27 -17.35 -0.13 1.91 16
21 Cl -0.01 -0.07 29.10 -51.86 -1.51 -1.58 16
22 N -0.52 -6.08 10.33 -10.31 -0.11 -6.19 16
23 C 0.39 4.92 8.41 -16.89 -0.14 4.78 16
24 F -0.08 -1.14 15.59 2.25 0.04 -1.10 16
25 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16
26 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16
27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16
30 H 0.03 0.33 6.86 -51.92 -0.36 -0.03 16
31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
36 H 0.40 3.92 4.26 -40.82 -0.17 3.74 16
37 H 0.16 0.67 6.52 -52.48 -0.34 0.33 16
38 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16
LS Contribution 335.27 15.07 5.05 5.05
Total: -1.00 -31.20 335.27 -7.06 -38.26
By element:
Atomic # 1 Polarization: 2.39 SS G_CDS: -4.31 Total: -1.92 kcal
Atomic # 6 Polarization: -2.51 SS G_CDS: -1.72 Total: -4.23 kcal
Atomic # 7 Polarization: -40.96 SS G_CDS: 0.33 Total: -40.63 kcal
Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.42 kcal
Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal
Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal
Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -31.20 -7.06 -38.26 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000908212529.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.035 kcal
(2) G-P(sol) polarization free energy of solvation -31.200 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.235 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.299 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds