Wall clock time and date at job start Tue Mar 31 2020 10:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47510 * 2 1 4 4 C 1.52998 * 109.47608 * 239.99606 * 2 1 3 5 5 C 1.50710 * 109.46775 * 60.00188 * 4 2 1 6 6 H 1.07994 * 119.99612 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99680 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00257 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99638 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47135 * 119.99875 * 9 7 5 12 12 H 1.48496 * 109.47197 * 240.00365 * 9 7 5 13 13 C 1.53010 * 109.47007 * 119.99800 * 2 1 3 14 14 N 1.46498 * 109.46962 * 300.00466 * 13 2 1 15 15 C 1.34778 * 119.99684 * 179.97438 * 14 13 2 16 16 O 1.21576 * 119.99923 * 359.97438 * 15 14 13 17 17 C 1.47623 * 119.99707 * 179.97438 * 15 14 13 18 18 C 1.40077 * 120.56661 * 0.24822 * 17 15 14 19 19 C 1.38237 * 118.33768 * 180.28593 * 18 17 15 20 20 C 1.38555 * 119.36919 * 359.73316 * 19 18 17 21 21 Cl 1.73598 * 119.45242 * 179.97438 * 20 19 18 22 22 N 1.32036 * 121.09521 * 359.97438 * 20 19 18 23 23 C 1.31933 * 121.82500 * 0.02562 * 22 20 19 24 24 F 1.35104 * 119.75122 * 180.02562 * 23 22 20 25 25 H 1.08997 * 109.47209 * 300.00003 * 1 2 3 26 26 H 1.08998 * 109.46410 * 60.00103 * 1 2 3 27 27 H 1.08998 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47496 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47116 * 300.00372 * 3 2 1 30 30 H 1.09010 * 109.46981 * 59.99629 * 3 2 1 31 31 H 1.08994 * 109.47741 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47076 * 300.00721 * 4 2 1 33 33 H 0.97005 * 120.00146 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.46922 * 179.97438 * 13 2 1 35 35 H 1.09000 * 109.46772 * 59.99833 * 13 2 1 36 36 H 0.96995 * 119.99913 * 359.97438 * 14 13 2 37 37 H 1.08004 * 120.83107 * 359.97438 * 18 17 15 38 38 H 1.07993 * 120.31812 * 179.74749 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9173 0.8674 -2.3806 7 6 1.8706 -0.4823 -3.7319 8 7 2.6258 -1.5521 -3.8525 9 14 1.2486 0.3987 -5.2572 10 1 0.4240 1.5657 -4.8531 11 1 2.4039 0.8645 -6.0655 12 1 0.4228 -0.5340 -6.0654 13 6 2.0400 -0.7213 1.2494 14 7 1.5516 -0.0306 2.4454 15 6 1.8767 -0.4914 3.6696 16 8 2.5750 -1.4804 3.7811 17 6 1.3850 0.2048 4.8749 18 6 0.5756 1.3423 4.7600 19 6 0.1459 1.9615 5.9189 20 6 0.5204 1.4404 7.1468 21 17 -0.0174 2.2168 8.6034 22 7 1.2796 0.3632 7.2275 23 6 1.7149 -0.2634 6.1512 24 9 2.4893 -1.3627 6.2825 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1301 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2491 33 1 2.8596 -1.8840 -4.7335 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.9942 0.7582 2.3564 37 1 0.2983 1.7288 3.7904 38 1 -0.4760 2.8429 5.8676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908212529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:29 Heat of formation + Delta-G solvation = -60.298775 kcal Electronic energy + Delta-G solvation = -23319.980604 eV Core-core repulsion = 19523.750024 eV Total energy + Delta-G solvation = -3796.230580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.32308 -40.92918 -39.43363 -37.32844 -37.12440 -34.16667 -33.22720 -32.13249 -31.37499 -27.27630 -26.62543 -26.62518 -25.00223 -24.12111 -22.89159 -20.85251 -19.12751 -18.48604 -18.05439 -17.43584 -16.65077 -16.39444 -15.95082 -15.67564 -15.15558 -14.70885 -14.52696 -14.29019 -14.22030 -13.71266 -13.66836 -13.44600 -13.11053 -12.84840 -12.34059 -12.13099 -12.01291 -11.89315 -11.27129 -11.10042 -10.90402 -10.73492 -10.70579 -10.67694 -10.51140 -10.32460 -10.05858 -9.98159 -9.48717 -9.28206 -8.99270 -8.93145 -8.41750 -6.05384 -4.07102 -0.17005 0.36590 1.03331 2.39797 2.91144 3.14117 3.18840 3.26287 3.34804 3.36333 3.81049 4.11594 4.13175 4.40140 4.46132 4.94657 5.08134 5.17204 5.30168 5.36779 5.50759 5.62013 5.75065 6.03227 6.08780 6.15934 6.26734 6.35452 6.52590 6.60781 6.72157 6.94843 6.97864 7.01994 7.43095 7.57639 7.68640 7.92675 8.09135 8.33904 8.97795 9.56508 11.06024 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.029241 B = 0.002568 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.343759 B =10900.160045 C =11661.119423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.035 3.965 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.710 5.710 15 C 0.554 3.446 16 O -0.519 6.519 17 C -0.201 4.201 18 C -0.003 4.003 19 C -0.170 4.170 20 C 0.228 3.772 21 Cl -0.010 7.010 22 N -0.515 5.515 23 C 0.386 3.614 24 F -0.076 7.076 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.162 0.838 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 9.766 20.374 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.362 5.362 15 C 0.338 3.662 16 O -0.396 6.396 17 C -0.208 4.208 18 C -0.029 4.029 19 C -0.191 4.191 20 C 0.063 3.937 21 Cl 0.019 6.981 22 N -0.232 5.232 23 C 0.232 3.768 24 F -0.054 7.054 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.180 0.820 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.086 8.619 21.230 23.707 hybrid contribution -0.642 0.905 -1.451 1.826 sum -6.728 9.524 19.779 22.961 Atomic orbital electron populations 1.21777 0.95188 1.01330 1.00221 1.20931 0.95527 0.95901 0.94968 1.21778 1.00717 0.95797 1.00220 1.19103 0.96457 0.95284 0.89375 1.21194 1.31284 1.12090 0.90454 0.92186 1.25015 0.95284 0.95066 0.99133 1.69967 1.36904 1.22962 1.23422 0.86592 0.78616 0.79666 0.83441 1.19803 1.21114 1.21120 1.21756 0.99290 0.96199 0.82266 1.46079 1.52783 1.31784 1.05532 1.17642 0.81329 0.84413 0.82815 1.90881 1.37132 1.25223 1.86392 1.21045 1.05141 1.00338 0.94315 1.21770 0.90410 0.90816 0.99922 1.21842 1.03896 1.03323 0.90086 1.21501 0.92982 0.90368 0.88836 1.98450 1.86832 1.76959 1.35856 1.66274 1.13896 1.09896 1.33152 1.17737 0.88234 0.83705 0.87167 1.91784 1.69866 1.47610 1.96187 0.95424 0.91237 0.93195 0.93198 0.91234 0.95433 0.96233 0.96230 0.93029 0.91267 0.91269 0.76665 0.82049 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16 2 C -0.07 -1.27 0.54 -154.50 -0.08 -1.35 16 3 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16 4 C 0.04 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.03 7.65 -34.44 -0.26 -13.29 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 14 N -0.71 -9.12 4.91 -61.32 -0.30 -9.42 16 15 C 0.55 7.83 7.77 -12.43 -0.10 7.73 16 16 O -0.52 -9.51 15.37 5.30 0.08 -9.42 16 17 C -0.20 -2.25 5.90 -104.76 -0.62 -2.87 16 18 C 0.00 -0.02 9.64 -38.89 -0.37 -0.40 16 19 C -0.17 -1.08 9.85 -39.46 -0.39 -1.47 16 20 C 0.23 2.04 7.27 -17.35 -0.13 1.91 16 21 Cl -0.01 -0.07 29.10 -51.86 -1.51 -1.58 16 22 N -0.52 -6.08 10.33 -10.31 -0.11 -6.19 16 23 C 0.39 4.92 8.41 -16.89 -0.14 4.78 16 24 F -0.08 -1.14 15.59 2.25 0.04 -1.10 16 25 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16 26 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 30 H 0.03 0.33 6.86 -51.92 -0.36 -0.03 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.40 3.92 4.26 -40.82 -0.17 3.74 16 37 H 0.16 0.67 6.52 -52.48 -0.34 0.33 16 38 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -31.20 335.27 -7.06 -38.26 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.31 Total: -1.92 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.72 Total: -4.23 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.33 Total: -40.63 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.20 -7.06 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908212529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.035 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds