Wall clock time and date at job start Tue Mar 31 2020 10:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47510 * 2 1 4 4 C 1.52998 * 109.47608 * 239.99606 * 2 1 3 5 5 C 1.50710 * 109.46775 * 60.00188 * 4 2 1 6 6 H 1.07994 * 119.99612 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99680 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00257 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99638 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47135 * 119.99875 * 9 7 5 12 12 H 1.48496 * 109.47197 * 240.00365 * 9 7 5 13 13 C 1.53010 * 109.47007 * 119.99800 * 2 1 3 14 14 N 1.46498 * 109.46962 * 300.00466 * 13 2 1 15 15 C 1.34778 * 119.99684 * 179.97438 * 14 13 2 16 16 O 1.21576 * 119.99923 * 359.97438 * 15 14 13 17 17 C 1.47623 * 119.99707 * 179.97438 * 15 14 13 18 18 C 1.40077 * 120.56661 * 0.24822 * 17 15 14 19 19 C 1.38237 * 118.33768 * 180.28593 * 18 17 15 20 20 C 1.38555 * 119.36919 * 359.73316 * 19 18 17 21 21 Cl 1.73598 * 119.45242 * 179.97438 * 20 19 18 22 22 N 1.32036 * 121.09521 * 359.97438 * 20 19 18 23 23 C 1.31933 * 121.82500 * 0.02562 * 22 20 19 24 24 F 1.35104 * 119.75122 * 180.02562 * 23 22 20 25 25 H 1.08997 * 109.47209 * 300.00003 * 1 2 3 26 26 H 1.08998 * 109.46410 * 60.00103 * 1 2 3 27 27 H 1.08998 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47496 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47116 * 300.00372 * 3 2 1 30 30 H 1.09010 * 109.46981 * 59.99629 * 3 2 1 31 31 H 1.08994 * 109.47741 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47076 * 300.00721 * 4 2 1 33 33 H 0.97005 * 120.00146 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.46922 * 179.97438 * 13 2 1 35 35 H 1.09000 * 109.46772 * 59.99833 * 13 2 1 36 36 H 0.96995 * 119.99913 * 359.97438 * 14 13 2 37 37 H 1.08004 * 120.83107 * 359.97438 * 18 17 15 38 38 H 1.07993 * 120.31812 * 179.74749 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9173 0.8674 -2.3806 7 6 1.8706 -0.4823 -3.7319 8 7 2.6258 -1.5521 -3.8525 9 14 1.2486 0.3987 -5.2572 10 1 0.4240 1.5657 -4.8531 11 1 2.4039 0.8645 -6.0655 12 1 0.4228 -0.5340 -6.0654 13 6 2.0400 -0.7213 1.2494 14 7 1.5516 -0.0306 2.4454 15 6 1.8767 -0.4914 3.6696 16 8 2.5750 -1.4804 3.7811 17 6 1.3850 0.2048 4.8749 18 6 0.5756 1.3423 4.7600 19 6 0.1459 1.9615 5.9189 20 6 0.5204 1.4404 7.1468 21 17 -0.0174 2.2168 8.6034 22 7 1.2796 0.3632 7.2275 23 6 1.7149 -0.2634 6.1512 24 9 2.4893 -1.3627 6.2825 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1301 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2491 33 1 2.8596 -1.8840 -4.7335 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.9942 0.7582 2.3564 37 1 0.2983 1.7288 3.7904 38 1 -0.4760 2.8429 5.8676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908212529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:28 Heat of formation + Delta-G solvation = -80.859967 kcal Electronic energy + Delta-G solvation = -23320.872204 eV Core-core repulsion = 19523.750024 eV Total energy + Delta-G solvation = -3797.122180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.29052 -41.78132 -40.51028 -38.64460 -37.85680 -35.46242 -34.46657 -33.61848 -32.16864 -29.11454 -27.90935 -27.87579 -25.96626 -25.07138 -24.44225 -22.00357 -20.27485 -19.44491 -18.86268 -18.61447 -18.31602 -17.57838 -16.90633 -16.68154 -16.38805 -16.37923 -15.66704 -15.18522 -15.12055 -14.99526 -14.83177 -14.48630 -14.26730 -14.07524 -13.90141 -13.79802 -12.88975 -12.73046 -12.67159 -12.55463 -12.50253 -12.30233 -12.20873 -11.93058 -11.59225 -11.51038 -11.39009 -11.17681 -10.90102 -10.79265 -10.50232 -10.33420 -10.05952 -8.11992 -6.19429 -0.93325 -0.29392 0.38802 1.43672 1.45204 1.49572 1.56205 1.88271 2.30136 2.30326 2.46442 3.12977 3.23278 3.35767 3.54700 3.65420 3.98981 4.10807 4.24968 4.34314 4.52551 4.56143 4.70954 4.74190 4.80804 5.00502 5.05488 5.10324 5.17896 5.33277 5.47381 5.56048 5.57585 5.60750 5.84604 5.93118 5.99116 6.31248 6.40454 6.96808 7.04433 7.48646 9.00741 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.029241 B = 0.002568 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.343759 B =10900.160045 C =11661.119423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.124 4.124 4 C 0.037 3.963 5 C -0.509 4.509 6 H 0.076 0.924 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.253 1.253 11 H -0.287 1.287 12 H -0.287 1.287 13 C 0.140 3.860 14 N -0.691 5.691 15 C 0.556 3.444 16 O -0.571 6.571 17 C -0.210 4.210 18 C 0.016 3.984 19 C -0.144 4.144 20 C 0.217 3.783 21 Cl 0.001 6.999 22 N -0.540 5.540 23 C 0.359 3.641 24 F -0.103 7.103 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.077 0.923 31 H -0.015 1.015 32 H -0.015 1.015 33 H 0.258 0.742 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.416 0.584 37 H 0.204 0.796 38 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 13.620 21.075 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.064 4.064 3 C -0.182 4.182 4 C -0.001 4.001 5 C -0.547 4.547 6 H 0.094 0.906 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.783 3.217 10 H -0.177 1.177 11 H -0.213 1.213 12 H -0.213 1.213 13 C 0.016 3.984 14 N -0.345 5.345 15 C 0.342 3.658 16 O -0.451 6.451 17 C -0.217 4.217 18 C -0.009 4.009 19 C -0.164 4.164 20 C 0.053 3.947 21 Cl 0.030 6.970 22 N -0.258 5.258 23 C 0.205 3.795 24 F -0.082 7.082 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.256 0.744 37 H 0.221 0.779 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.852 12.532 21.950 26.780 hybrid contribution 0.173 -0.248 -1.551 1.580 sum -8.678 12.283 20.399 25.344 Atomic orbital electron populations 1.21733 0.93226 1.01130 1.02067 1.20716 0.96967 0.96420 0.92320 1.21733 0.99982 0.94374 1.02065 1.19005 0.94329 0.94277 0.92493 1.21636 1.30156 1.11989 0.90892 0.90563 1.25953 0.95767 0.95880 1.02793 1.70129 1.39011 1.25071 1.23952 0.85509 0.77983 0.78897 0.79331 1.17679 1.21330 1.21340 1.21325 0.98152 0.95589 0.83309 1.45722 1.52673 1.31980 1.04087 1.18043 0.80305 0.83739 0.83685 1.90863 1.39437 1.27646 1.87115 1.20781 1.07011 1.01971 0.91922 1.22232 0.88061 0.88526 1.02103 1.22333 1.02312 1.03525 0.88269 1.21990 0.92520 0.89793 0.90426 1.98459 1.86500 1.76409 1.35654 1.66202 1.15046 1.11243 1.33268 1.17951 0.89379 0.83931 0.88227 1.91709 1.70929 1.49171 1.96390 0.90462 0.92396 0.94532 0.94532 0.92390 0.90473 0.99626 0.99623 0.93293 0.93162 0.93164 0.74388 0.77923 0.77419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 8.05 71.98 0.58 -3.02 16 2 C -0.06 -2.16 0.54 -52.18 -0.03 -2.19 16 3 C -0.12 -3.60 8.05 71.98 0.58 -3.02 16 4 C 0.04 1.77 4.04 29.85 0.12 1.89 16 5 C -0.51 -25.98 7.65 25.60 0.20 -25.79 16 6 H 0.08 3.59 5.68 -2.91 -0.02 3.57 16 7 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 8 N -0.94 -56.19 13.29 21.45 0.28 -55.91 16 9 Si 0.96 42.26 29.54 68.60 2.03 44.29 16 10 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.14 4.53 4.56 86.38 0.39 4.92 16 14 N -0.69 -16.08 4.91 -466.18 -2.29 -18.37 16 15 C 0.56 15.21 7.77 86.72 0.67 15.89 16 16 O -0.57 -21.65 15.37 -3.96 -0.06 -21.71 16 17 C -0.21 -4.27 5.90 -19.95 -0.12 -4.39 16 18 C 0.02 0.15 9.64 22.72 0.22 0.37 16 19 C -0.14 -1.07 9.85 22.35 0.22 -0.85 16 20 C 0.22 3.24 7.27 84.74 0.62 3.86 16 21 Cl 0.00 0.01 29.10 -2.72 -0.08 -0.07 16 22 N -0.54 -12.24 10.33 -186.52 -1.93 -14.17 16 23 C 0.36 9.11 8.41 85.08 0.72 9.82 16 24 F -0.10 -3.28 15.59 44.97 0.70 -2.58 16 25 H 0.08 1.46 6.86 -2.39 -0.02 1.44 16 26 H 0.06 1.83 6.62 -2.39 -0.02 1.81 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.83 6.62 -2.39 -0.02 1.82 16 30 H 0.08 1.46 6.86 -2.38 -0.02 1.44 16 31 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 32 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.42 6.05 4.26 -92.71 -0.40 5.66 16 37 H 0.20 0.14 6.52 -2.91 -0.02 0.12 16 38 H 0.21 -0.28 8.06 -2.91 -0.02 -0.30 16 Total: -1.00 -74.78 335.27 4.00 -70.78 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 0.71 Total: 0.17 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.63 Total: -2.43 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -3.93 Total: -88.44 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.71 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.70 Total: -2.58 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -74.78 4.00 -70.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908212529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.079 kcal (2) G-P(sol) polarization free energy of solvation -74.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds