Wall clock time and date at job start Tue Mar 31 2020 10:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47246 * 2 1 4 4 C 1.52998 * 109.47512 * 120.00160 * 2 1 3 5 5 N 1.46497 * 109.47158 * 63.00818 * 4 2 1 6 6 C 1.46496 * 120.00270 * 84.41441 * 5 4 2 7 7 C 1.50703 * 109.47015 * 79.97388 * 6 5 4 8 8 H 1.07997 * 120.00285 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99779 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00168 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99978 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46926 * 60.00250 * 11 9 7 13 13 H 1.48499 * 109.47299 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47012 * 300.00565 * 11 9 7 15 15 C 1.34783 * 119.99890 * 264.41577 * 5 4 2 16 16 O 1.21525 * 119.99843 * 353.14709 * 15 5 4 17 17 C 1.47999 * 119.99688 * 173.14595 * 15 5 4 18 18 C 1.39860 * 120.93823 * 31.04671 * 17 15 5 19 19 C 1.38203 * 119.02346 * 179.77636 * 18 17 15 20 20 Cl 1.73599 * 119.52977 * 180.24872 * 19 18 17 21 21 N 1.31945 * 120.94464 * 0.50798 * 19 18 17 22 22 C 1.31744 * 122.07741 * 359.73948 * 21 19 18 23 23 C 1.38486 * 120.86662 * 0.02562 * 22 21 19 24 24 F 1.35104 * 120.52401 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.46942 * 63.98475 * 1 2 3 26 26 H 1.09005 * 109.46797 * 183.98774 * 1 2 3 27 27 H 1.09006 * 109.46973 * 303.98165 * 1 2 3 28 28 H 1.09007 * 109.47196 * 240.00187 * 2 1 3 29 29 H 1.09002 * 109.47093 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.46848 * 300.00303 * 3 2 1 31 31 H 1.08990 * 109.46708 * 60.00205 * 3 2 1 32 32 H 1.09005 * 109.47037 * 303.01061 * 4 2 1 33 33 H 1.09001 * 109.47335 * 183.00970 * 4 2 1 34 34 H 1.08999 * 109.47749 * 199.97603 * 6 5 4 35 35 H 1.09002 * 109.47220 * 319.97267 * 6 5 4 36 36 H 0.97003 * 120.00243 * 179.97438 * 10 9 7 37 37 H 1.08003 * 120.48420 * 359.97438 * 18 17 15 38 38 H 1.08001 * 119.56625 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6119 -2.1218 1.2135 6 6 2.4021 -3.1108 0.4762 7 6 3.5843 -3.5322 1.3105 8 1 3.7320 -3.1062 2.2918 9 6 4.4767 -4.4624 0.8212 10 7 4.2966 -4.9815 -0.3736 11 14 5.9417 -4.9852 1.8555 12 1 5.4616 -5.5830 3.1273 13 1 6.7428 -5.9877 1.1082 14 1 6.7856 -3.8002 2.1532 15 6 0.4909 -2.5004 1.8589 16 8 -0.0962 -1.7103 2.5716 17 6 -0.0251 -3.8784 1.6997 18 6 0.8446 -4.9501 1.4734 19 6 0.3203 -6.2214 1.3352 20 17 1.3883 -7.5621 1.0605 21 7 -0.9807 -6.4299 1.4040 22 6 -1.8364 -5.4497 1.6105 23 6 -1.3986 -4.1451 1.7651 24 9 -2.2823 -3.1451 1.9761 25 1 -0.3633 0.4507 -0.9235 26 1 -0.3633 -1.0252 0.0715 27 1 -0.3633 0.5744 0.8522 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6333 -0.2395 2.1384 33 1 3.1287 -0.6747 1.2765 34 1 1.7830 -3.9809 0.2578 35 1 2.7541 -2.6719 -0.4573 36 1 4.9247 -5.6356 -0.7180 37 1 1.9104 -4.7871 1.4109 38 1 -2.8934 -5.6665 1.6592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930902851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:05 Heat of formation + Delta-G solvation = -51.623840 kcal Electronic energy + Delta-G solvation = -24893.296289 eV Core-core repulsion = 21097.441883 eV Total energy + Delta-G solvation = -3795.854406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.17275 -41.91524 -40.43325 -37.72932 -37.56660 -36.21865 -34.37131 -33.61617 -31.85230 -29.52651 -28.15422 -27.76211 -25.82655 -24.68794 -24.60865 -21.69410 -20.62789 -19.02800 -18.76686 -18.62841 -18.36365 -17.46417 -17.02733 -16.82488 -16.31156 -16.17806 -15.74110 -15.54020 -15.22327 -15.11903 -14.76722 -14.43424 -14.30540 -13.77394 -13.67113 -13.11758 -12.94815 -12.86084 -12.74632 -12.66506 -12.48362 -12.30472 -12.25057 -12.15943 -11.87836 -11.69139 -11.58196 -11.45262 -11.12347 -10.71803 -10.48378 -9.93221 -9.53997 -8.22756 -6.38825 -0.70663 -0.38141 0.67425 1.43435 1.46656 1.51353 1.59205 1.99552 2.30739 2.41825 2.72997 3.05937 3.13907 3.36452 3.50893 3.79612 3.90637 4.01099 4.15061 4.23844 4.39380 4.60563 4.65684 4.74582 4.79074 4.84089 4.88371 4.98320 5.03263 5.16551 5.18997 5.21001 5.37445 5.42186 5.60960 5.72001 5.95451 6.29801 6.39925 6.71518 7.04607 7.33210 8.80557 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.009249 B = 0.007938 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.559908 B = 3526.394386 C = 5999.459268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.119 3.881 5 N -0.579 5.579 6 C 0.221 3.779 7 C -0.558 4.558 8 H 0.056 0.944 9 C 0.045 3.955 10 N -0.892 5.892 11 Si 0.939 3.061 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.273 1.273 15 C 0.555 3.445 16 O -0.565 6.565 17 C -0.131 4.131 18 C -0.110 4.110 19 C 0.143 3.857 20 Cl -0.012 7.012 21 N -0.443 5.443 22 C 0.097 3.903 23 C 0.095 3.905 24 F -0.112 7.112 25 H 0.067 0.933 26 H 0.023 0.977 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.272 0.728 37 H 0.203 0.797 38 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 2.158 0.057 7.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 C -0.192 4.192 4 C -0.003 4.003 5 N -0.308 5.308 6 C 0.102 3.898 7 C -0.596 4.596 8 H 0.074 0.926 9 C -0.159 4.159 10 N -0.528 5.528 11 Si 0.764 3.236 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.198 1.198 15 C 0.343 3.657 16 O -0.447 6.447 17 C -0.142 4.142 18 C -0.130 4.130 19 C -0.019 4.019 20 Cl 0.017 6.983 21 N -0.154 5.154 22 C -0.063 4.063 23 C 0.072 3.928 24 F -0.090 7.090 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.219 0.781 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.519 1.527 0.139 7.674 hybrid contribution 1.326 0.361 0.444 1.444 sum -6.193 1.889 0.583 6.501 Atomic orbital electron populations 1.21692 0.95194 1.00165 1.01806 1.21455 0.96122 0.97642 0.97532 1.21690 1.01324 0.93486 1.02667 1.21623 1.00022 0.79750 0.98951 1.48066 1.22788 1.10594 1.49305 1.20017 0.90417 0.87751 0.91664 1.21434 1.09665 1.25398 1.03101 0.92568 1.25426 0.99361 0.95475 0.95671 1.69960 1.37597 1.28304 1.16984 0.85891 0.80010 0.78332 0.79360 1.19657 1.20495 1.19811 1.17941 0.81339 0.86033 0.80436 1.90710 1.59967 1.53985 1.40025 1.20628 0.93394 0.95660 1.04553 1.23655 1.06125 0.89706 0.93480 1.21631 0.89656 0.88791 1.01852 1.98411 1.60992 1.44817 1.94115 1.66991 1.01964 1.35662 1.10800 1.23324 1.01833 0.84039 0.97105 1.18998 0.85678 0.87562 1.00579 1.91569 1.66475 1.59550 1.91426 0.91372 0.95774 0.92877 0.91872 0.91996 0.91105 0.92101 0.90687 0.90158 0.92665 0.95914 0.91873 0.78109 0.75817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.51 71.98 0.61 -3.37 16 2 C -0.11 -3.25 3.14 -10.79 -0.03 -3.28 16 3 C -0.13 -3.09 9.19 71.98 0.66 -2.43 16 4 C 0.12 4.22 4.99 86.38 0.43 4.65 16 5 N -0.58 -23.64 2.22 -829.40 -1.84 -25.48 16 6 C 0.22 9.89 4.68 85.63 0.40 10.29 16 7 C -0.56 -26.63 7.59 25.60 0.19 -26.43 16 8 H 0.06 2.76 7.81 -2.91 -0.02 2.73 16 9 C 0.05 2.16 5.37 84.66 0.45 2.61 16 10 N -0.89 -44.20 13.29 21.45 0.28 -43.92 16 11 Si 0.94 38.95 29.54 68.60 2.03 40.97 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 15 C 0.55 23.17 5.77 86.83 0.50 23.67 16 16 O -0.57 -25.08 15.02 -3.79 -0.06 -25.13 16 17 C -0.13 -5.04 5.59 -19.85 -0.11 -5.15 16 18 C -0.11 -4.31 7.35 22.65 0.17 -4.15 16 19 C 0.14 5.14 7.26 84.67 0.62 5.75 16 20 Cl -0.01 -0.42 29.10 -2.72 -0.08 -0.50 16 21 N -0.44 -13.98 10.31 -186.68 -1.92 -15.90 16 22 C 0.10 2.60 11.17 84.77 0.95 3.55 16 23 C 0.09 3.10 7.29 22.77 0.17 3.27 16 24 F -0.11 -3.70 16.17 44.97 0.73 -2.98 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.02 0.83 6.30 -2.38 -0.02 0.82 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 2.03 8.00 -2.38 -0.02 2.01 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 2.70 7.19 -2.38 -0.02 2.68 16 33 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 34 H 0.06 2.56 3.93 -2.41 -0.01 2.55 16 35 H 0.02 1.08 8.00 -2.39 -0.02 1.06 16 36 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 37 H 0.20 8.94 3.46 -2.91 -0.01 8.93 16 38 H 0.23 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -54.01 334.72 5.24 -48.77 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.10 Total: 15.18 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.01 Total: 8.98 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -3.48 Total: -85.30 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.06 Total: -25.13 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.73 Total: -2.98 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -54.01 5.24 -48.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930902851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.852 kcal (2) G-P(sol) polarization free energy of solvation -54.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds