Wall clock time and date at job start Tue Mar 31 2020 10:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00485 * 2 1 4 4 O 1.21600 * 120.00281 * 179.97438 * 3 2 1 5 5 C 1.47423 * 119.99648 * 359.97438 * 3 2 1 6 6 C 1.39982 * 120.15865 * 89.72867 * 5 3 2 7 7 F 1.35096 * 120.08675 * 359.97078 * 6 5 3 8 8 C 1.38103 * 119.82554 * 179.69427 * 6 5 3 9 9 C 1.38599 * 120.16655 * 0.59949 * 8 6 5 10 10 F 1.35098 * 119.83282 * 179.69209 * 9 8 6 11 11 C 1.38596 * 120.32928 * 359.67869 * 9 8 6 12 12 C 1.38098 * 120.16803 * 0.02562 * 11 9 8 13 13 F 1.35095 * 120.08845 * 180.02562 * 12 11 9 14 14 C 1.46508 * 119.99536 * 179.97438 * 2 1 3 15 15 C 1.53496 * 114.20706 * 60.00133 * 14 2 1 16 16 N 1.47062 * 87.98485 * 220.14769 * 15 14 2 17 17 C 1.36939 * 136.05593 * 207.08750 * 16 15 14 18 18 H 1.08008 * 119.99868 * 7.82597 * 17 16 15 19 19 C 1.38808 * 120.00203 * 187.82575 * 17 16 15 20 20 N 1.31618 * 119.99998 * 195.17052 * 19 17 16 21 21 Si 1.86797 * 119.99840 * 15.16580 * 19 17 16 22 22 H 1.48503 * 109.47450 * 270.00422 * 21 19 17 23 23 H 1.48503 * 109.47360 * 30.00092 * 21 19 17 24 24 H 1.48498 * 109.47360 * 150.00270 * 21 19 17 25 25 C 1.47059 * 87.88616 * 27.34176 * 16 15 14 26 26 H 1.08994 * 109.47345 * 270.00261 * 1 2 3 27 27 H 1.09001 * 109.46733 * 30.00327 * 1 2 3 28 28 H 1.08996 * 109.47534 * 149.99922 * 1 2 3 29 29 H 1.08006 * 119.91387 * 180.27365 * 8 6 5 30 30 H 1.08006 * 119.91689 * 180.02562 * 11 9 8 31 31 H 1.09001 * 113.27729 * 193.06987 * 14 2 1 32 32 H 1.09008 * 113.46447 * 105.36204 * 15 14 2 33 33 H 1.08996 * 113.51824 * 334.94014 * 15 14 2 34 34 H 0.96995 * 120.00365 * 354.90363 * 20 19 17 35 35 H 1.08997 * 113.47135 * 87.43718 * 25 16 15 36 36 H 1.09007 * 113.47198 * 217.88025 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3550 1.1671 0.0005 5 6 1.4019 2.4439 -0.0006 6 6 1.0448 3.0503 1.2095 7 9 1.3743 2.4669 2.3826 8 6 0.3599 4.2495 1.2010 9 6 0.0153 4.8462 -0.0016 10 9 -0.6602 6.0162 -0.0021 11 6 0.3603 4.2487 -1.2036 12 6 1.0505 3.0526 -1.2111 13 9 1.3865 2.4719 -2.3837 14 6 2.1974 -1.2689 0.0006 15 6 1.9058 -2.1644 -1.2115 16 7 1.9166 -3.3164 -0.2974 17 6 2.1881 -4.6546 -0.4008 18 1 2.5983 -5.0532 -1.3170 19 6 1.9361 -5.4989 0.6718 20 7 2.4597 -6.7062 0.6962 21 14 0.8540 -4.9215 2.0807 22 1 1.6949 -4.2660 3.1144 23 1 -0.1480 -3.9517 1.5700 24 1 0.1547 -6.0875 2.6778 25 6 1.5013 -2.4000 0.7751 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5138 29 1 0.0876 4.7209 2.1338 30 1 0.0887 4.7197 -2.1368 31 1 3.2575 -1.1542 0.2269 32 1 2.7144 -2.1825 -1.9423 33 1 0.9322 -1.9792 -1.6650 34 1 2.9601 -7.0333 -0.0676 35 1 0.4207 -2.2762 0.8462 36 1 1.9652 -2.6188 1.7370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043707876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:45 Heat of formation + Delta-G solvation = -85.314146 kcal Electronic energy + Delta-G solvation = -26174.457871 eV Core-core repulsion = 21825.345863 eV Total energy + Delta-G solvation = -4349.112008 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.36456 -50.34516 -50.22419 -41.68928 -40.11234 -39.05394 -36.21561 -34.47094 -32.21435 -31.86716 -29.88042 -28.12047 -27.04625 -25.88038 -24.43654 -24.10900 -21.93226 -20.60834 -19.82346 -19.59873 -19.16222 -18.83861 -18.14141 -17.40050 -17.26188 -17.14298 -17.01341 -16.63851 -16.53690 -16.46173 -16.24285 -15.64764 -15.57078 -15.46438 -15.27443 -14.24728 -14.07060 -13.70256 -13.68576 -13.51926 -13.44660 -13.36476 -13.13331 -13.10664 -12.83542 -12.54441 -12.03460 -11.57248 -11.37423 -11.33995 -10.89457 -10.18713 -10.14641 -9.81790 -9.31839 -8.67744 -5.53334 -0.66984 -0.41243 1.10101 1.39197 1.49528 1.58438 1.65562 1.86956 2.22462 2.52958 2.85235 2.91046 2.94141 3.11187 3.12803 3.41003 3.52608 3.61748 3.98874 4.10482 4.13349 4.35741 4.39204 4.41692 4.44836 4.48405 4.51194 4.53122 4.65816 4.74817 4.80632 4.93645 5.10699 5.35731 5.39671 5.89873 6.09100 6.63724 6.75021 7.26548 8.18331 8.84187 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.025592 B = 0.003574 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.839468 B = 7833.205601 C = 8293.457206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.585 5.585 3 C 0.562 3.438 4 O -0.565 6.565 5 C -0.217 4.217 6 C 0.186 3.814 7 F -0.122 7.122 8 C -0.180 4.180 9 C 0.189 3.811 10 F -0.111 7.111 11 C -0.180 4.180 12 C 0.185 3.815 13 F -0.122 7.122 14 C 0.120 3.880 15 C 0.112 3.888 16 N -0.647 5.647 17 C -0.296 4.296 18 H 0.051 0.949 19 C -0.080 4.080 20 N -0.964 5.964 21 Si 1.099 2.901 22 H -0.281 1.281 23 H -0.243 1.243 24 H -0.299 1.299 25 C 0.095 3.905 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.190 0.810 30 H 0.190 0.810 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.247 0.753 35 H 0.080 0.920 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.719 30.039 -0.680 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.315 5.315 3 C 0.349 3.651 4 O -0.444 6.444 5 C -0.223 4.223 6 C 0.166 3.834 7 F -0.100 7.100 8 C -0.199 4.199 9 C 0.169 3.831 10 F -0.089 7.089 11 C -0.200 4.200 12 C 0.164 3.836 13 F -0.100 7.100 14 C 0.015 3.985 15 C -0.015 4.015 16 N -0.376 5.376 17 C -0.423 4.423 18 H 0.068 0.932 19 C -0.272 4.272 20 N -0.609 5.609 21 Si 0.923 3.077 22 H -0.208 1.208 23 H -0.167 1.167 24 H -0.227 1.227 25 C -0.031 4.031 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.208 0.792 30 H 0.208 0.792 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.638 29.334 0.732 31.566 hybrid contribution 1.259 -0.598 -1.868 2.331 sum -10.379 28.735 -1.136 30.573 Atomic orbital electron populations 1.22171 0.76727 1.04814 1.04034 1.47860 1.08684 1.04373 1.70604 1.18229 0.86746 0.84022 0.76078 1.90816 1.15014 1.87629 1.50918 1.19818 1.09322 0.99049 0.94076 1.16851 0.95669 0.91743 0.79162 1.91607 1.90085 1.83633 1.44670 1.21194 1.02848 0.94873 1.01015 1.16832 0.91759 0.82218 0.92303 1.91627 1.76454 1.43660 1.97192 1.21189 1.02812 0.94932 1.01018 1.16842 0.95759 0.91832 0.79155 1.91608 1.89948 1.83742 1.44711 1.23018 0.97062 0.80422 0.98031 1.22920 0.99862 0.84883 0.93820 1.45818 1.80471 1.03223 1.08078 1.19928 1.38508 0.81876 1.02005 0.93152 1.27185 1.01792 0.94388 1.03880 1.71011 1.38315 1.20401 1.31162 0.83378 0.76054 0.75114 0.73109 1.20771 1.16706 1.22675 1.23281 0.99175 0.87183 0.93413 0.90163 0.88981 0.89548 0.79250 0.79244 0.87556 0.93874 0.91501 0.94324 0.90303 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 8.94 127.77 1.14 2.41 16 2 N -0.58 -16.89 3.12 -825.29 -2.57 -19.46 16 3 C 0.56 17.07 6.39 86.66 0.55 17.63 16 4 O -0.56 -22.13 16.62 -4.03 -0.07 -22.20 16 5 C -0.22 -4.64 3.92 -20.01 -0.08 -4.72 16 6 C 0.19 3.18 7.29 22.66 0.17 3.35 16 7 F -0.12 -2.57 16.83 44.97 0.76 -1.82 16 8 C -0.18 -1.78 9.99 22.32 0.22 -1.56 16 9 C 0.19 1.69 7.30 22.44 0.16 1.85 16 10 F -0.11 -0.97 17.26 44.97 0.78 -0.19 16 11 C -0.18 -1.77 9.98 22.32 0.22 -1.55 16 12 C 0.18 3.13 6.85 22.66 0.16 3.29 16 13 F -0.12 -2.55 16.83 44.97 0.76 -1.80 16 14 C 0.12 4.35 4.57 45.55 0.21 4.55 16 15 C 0.11 4.37 8.24 83.17 0.69 5.06 16 16 N -0.65 -31.53 3.62 -738.12 -2.67 -34.20 16 17 C -0.30 -17.41 11.03 84.03 0.93 -16.48 16 18 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 19 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 20 N -0.96 -62.77 13.70 21.65 0.30 -62.48 16 21 Si 1.10 52.20 25.50 68.60 1.75 53.95 16 22 H -0.28 -12.76 6.97 99.48 0.69 -12.07 16 23 H -0.24 -9.83 5.66 99.48 0.56 -9.26 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 C 0.10 3.78 5.03 83.26 0.42 4.20 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.36 6.54 -2.39 -0.02 1.34 16 28 H 0.09 1.75 6.18 -2.39 -0.01 1.73 16 29 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 30 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 31 H 0.11 4.35 7.28 -2.39 -0.02 4.33 16 32 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.07 2.29 6.97 -2.39 -0.02 2.28 16 34 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 35 H 0.08 2.74 5.45 -2.39 -0.01 2.72 16 36 H 0.05 2.07 6.22 -2.38 -0.01 2.05 16 Total: -1.00 -76.96 316.08 5.23 -71.73 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 0.95 Total: 2.76 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.25 Total: 13.69 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.95 Total: -116.13 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.07 Total: -22.20 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 2.29 Total: -3.81 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 1.75 Total: 53.95 kcal Total: -76.96 5.23 -71.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043707876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.588 kcal (2) G-P(sol) polarization free energy of solvation -76.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds