Wall clock time and date at job start Tue Mar 31 2020 10:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46495 * 120.00107 * 2 1 4 4 C 1.53010 * 109.47064 * 90.00143 * 3 2 1 5 5 N 1.46495 * 109.47064 * 179.97438 * 4 3 2 6 6 C 1.39120 * 119.99599 * 179.97438 * 5 4 3 7 7 N 1.32565 * 120.11101 * 0.02562 * 6 5 4 8 8 C 1.32302 * 119.94306 * 179.97438 * 7 6 5 9 9 C 1.38065 * 120.16575 * 0.02562 * 8 7 6 10 10 N 1.32349 * 120.22405 * 0.02562 * 9 8 7 11 11 C 1.32068 * 120.04995 * 359.97438 * 10 9 8 12 12 F 1.35107 * 120.07998 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00099 * 180.02562 * 2 1 3 14 14 O 1.21279 * 120.00274 * 180.02562 * 13 2 1 15 15 C 1.50696 * 119.99863 * 359.97438 * 13 2 1 16 16 S 1.80994 * 109.47229 * 180.02562 * 15 13 2 17 17 C 1.76206 * 100.00212 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99510 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99655 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00188 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46966 * 90.00362 * 21 19 17 23 23 H 1.48506 * 109.47145 * 210.00307 * 21 19 17 24 24 H 1.48500 * 109.47551 * 330.00612 * 21 19 17 25 25 H 1.09005 * 109.47135 * 89.99799 * 1 2 3 26 26 H 1.09001 * 109.47497 * 209.99549 * 1 2 3 27 27 H 1.08995 * 109.47359 * 329.99727 * 1 2 3 28 28 H 1.08998 * 109.47323 * 330.00380 * 3 2 1 29 29 H 1.08994 * 109.47460 * 210.00070 * 3 2 1 30 30 H 1.08998 * 109.46857 * 59.99952 * 4 3 2 31 31 H 1.09002 * 109.46765 * 299.99978 * 4 3 2 32 32 H 0.96996 * 120.00517 * 0.02562 * 5 4 3 33 33 H 1.08003 * 119.91905 * 180.02562 * 8 7 6 34 34 H 1.08004 * 119.88650 * 179.72239 * 9 8 7 35 35 H 1.09004 * 109.47671 * 300.00808 * 15 13 2 36 36 H 1.09000 * 109.47071 * 60.00586 * 15 13 2 37 37 H 0.96994 * 120.00050 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1855 2.9787 1.4426 6 6 3.5330 3.5812 2.6475 7 7 3.2022 3.0093 3.7967 8 6 3.5348 3.5849 4.9406 9 6 4.2252 4.7806 4.9407 10 7 4.5578 5.3579 3.7971 11 6 4.2302 4.7908 2.6502 12 9 4.5690 5.3799 1.4824 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1673 -0.0001 15 6 1.3854 -2.4723 -0.0005 16 16 2.5615 -3.8480 -0.0005 17 6 1.4414 -5.2082 -0.0013 18 1 0.3762 -5.0305 -0.0012 19 6 1.9282 -6.5081 -0.0010 20 7 1.0915 -7.5242 -0.0010 21 14 3.7707 -6.8154 -0.0004 22 1 4.2585 -6.8967 1.3998 23 1 4.0597 -8.0930 -0.7003 24 1 4.4588 -5.7010 -0.7003 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6084 2.0284 -0.5138 29 1 3.1498 1.1384 -0.5138 30 1 3.0416 0.9507 1.9564 31 1 1.5000 1.8407 1.9564 32 1 3.4280 3.3988 0.6026 33 1 3.2655 3.1184 5.8767 34 1 4.4904 5.2488 5.8771 35 1 0.7589 -2.5303 0.8896 36 1 0.7585 -2.5299 -0.8903 37 1 1.4316 -8.4325 -0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101514708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:57 Heat of formation + Delta-G solvation = -14.165926 kcal Electronic energy + Delta-G solvation = -22554.828990 eV Core-core repulsion = 18794.935338 eV Total energy + Delta-G solvation = -3759.893652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.35716 -41.27794 -39.75291 -37.13904 -35.46781 -34.10864 -32.46788 -31.71741 -29.87013 -28.22421 -26.62323 -25.65753 -25.00743 -24.03447 -22.72452 -19.65748 -18.79472 -18.36120 -17.97889 -17.72862 -16.86881 -16.70979 -16.17345 -15.84210 -15.37214 -15.02497 -14.97135 -14.76748 -14.35163 -14.11335 -13.83252 -13.65234 -13.37563 -13.17615 -12.82101 -12.58099 -12.51414 -12.18645 -12.07567 -11.89493 -11.44420 -11.28402 -11.03278 -10.64492 -10.49358 -9.89253 -9.69299 -9.58342 -9.03158 -8.81234 -8.53211 -8.26199 -6.95874 -6.31703 -4.03923 0.38140 0.73966 2.27244 2.72632 2.83190 3.05576 3.21565 3.23513 3.31231 3.48264 3.55472 3.79032 3.91130 4.30297 4.48501 4.59461 4.64499 4.74507 4.78024 4.97275 5.07399 5.08482 5.11630 5.15656 5.30755 5.57108 5.59568 5.62580 5.72343 5.81214 5.95253 6.31952 6.48073 6.52616 6.98683 7.27230 7.42938 7.91323 8.30539 8.38587 9.14448 10.77486 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.002494 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.375050 B =11223.609682 C =11656.160892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.107 3.893 4 C 0.114 3.886 5 N -0.704 5.704 6 C 0.357 3.643 7 N -0.477 5.477 8 C 0.100 3.900 9 C 0.008 3.992 10 N -0.431 5.431 11 C 0.194 3.806 12 F -0.109 7.109 13 C 0.532 3.468 14 O -0.513 6.513 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.415 0.585 33 H 0.179 0.821 34 H 0.177 0.823 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 25.340 5.996 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.356 5.356 3 C -0.018 4.018 4 C -0.011 4.011 5 N -0.337 5.337 6 C 0.113 3.887 7 N -0.200 5.200 8 C -0.060 4.060 9 C -0.152 4.152 10 N -0.150 5.150 11 C 0.028 3.972 12 F -0.088 7.088 13 C 0.320 3.680 14 O -0.387 6.387 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.196 0.804 34 H 0.194 0.806 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.538 24.939 5.934 25.682 hybrid contribution -0.694 -0.077 -0.425 0.817 sum 0.844 24.862 5.510 25.479 Atomic orbital electron populations 1.21855 0.78939 1.03535 1.02198 1.47686 1.07093 1.04996 1.75844 1.21437 0.99011 0.85875 0.95428 1.21805 0.96772 0.84383 0.98166 1.44419 1.60626 1.24652 1.04023 1.19061 0.92067 0.88679 0.88844 1.68155 1.22443 1.32695 0.96736 1.23601 0.93097 0.92900 0.96391 1.23202 1.00988 0.95553 0.95467 1.67590 1.16847 1.32942 0.97636 1.18377 1.03709 0.92033 0.83066 1.91613 1.90714 1.83873 1.42624 1.20403 0.87961 0.84651 0.74998 1.90708 1.13695 1.86748 1.47564 1.23309 1.03119 0.94955 1.05741 1.84817 1.11918 0.97555 1.97424 1.22293 0.94830 0.90842 1.58878 0.89353 1.24712 0.98545 0.94882 0.93163 1.69932 1.34808 0.98897 1.47983 0.86737 0.85338 0.79837 0.79954 1.19194 1.19923 1.15941 0.92274 0.90236 0.91173 0.90034 0.89077 0.90447 0.91116 0.74720 0.80383 0.80643 0.88363 0.88370 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.24 59.84 0.61 1.29 16 2 N -0.62 -7.48 2.87 -181.58 -0.52 -8.00 16 3 C 0.11 1.04 5.52 -4.04 -0.02 1.02 16 4 C 0.11 1.15 6.04 -4.04 -0.02 1.13 16 5 N -0.70 -6.49 5.71 -60.21 -0.34 -6.84 16 6 C 0.36 3.76 7.50 -154.58 -1.16 2.60 16 7 N -0.48 -5.02 9.73 -12.17 -0.12 -5.14 16 8 C 0.10 0.75 11.21 -17.41 -0.20 0.55 16 9 C 0.01 0.06 11.21 -17.39 -0.19 -0.14 16 10 N -0.43 -4.54 10.50 -13.23 -0.14 -4.68 16 11 C 0.19 2.09 8.47 -16.94 -0.14 1.95 16 12 F -0.11 -1.15 16.68 2.25 0.04 -1.11 16 13 C 0.53 9.09 7.69 -10.99 -0.08 9.01 16 14 O -0.51 -10.65 15.44 5.56 0.09 -10.56 16 15 C -0.12 -2.26 4.71 36.00 0.17 -2.09 16 16 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 17 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 18 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 19 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 21 Si 0.86 21.61 27.74 -169.99 -4.71 16.90 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 27 H 0.07 0.44 8.07 -51.93 -0.42 0.03 16 28 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.09 1.03 7.42 -51.93 -0.39 0.65 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.42 3.04 7.96 -40.82 -0.33 2.71 16 33 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.10 1.70 7.40 -51.91 -0.38 1.32 16 36 H 0.10 1.71 8.11 -51.92 -0.42 1.29 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -35.62 340.63 -7.01 -42.63 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.38 Total: -0.78 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.83 Total: 3.53 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.35 Total: -50.16 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.62 -7.01 -42.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101514708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.459 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds