Wall clock time and date at job start Tue Mar 31 2020 10:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46495 * 120.00107 * 2 1 4 4 C 1.53010 * 109.47064 * 90.00143 * 3 2 1 5 5 N 1.46495 * 109.47064 * 179.97438 * 4 3 2 6 6 C 1.39120 * 119.99599 * 179.97438 * 5 4 3 7 7 N 1.32565 * 120.11101 * 0.02562 * 6 5 4 8 8 C 1.32302 * 119.94306 * 179.97438 * 7 6 5 9 9 C 1.38065 * 120.16575 * 0.02562 * 8 7 6 10 10 N 1.32349 * 120.22405 * 0.02562 * 9 8 7 11 11 C 1.32068 * 120.04995 * 359.97438 * 10 9 8 12 12 F 1.35107 * 120.07998 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00099 * 180.02562 * 2 1 3 14 14 O 1.21279 * 120.00274 * 180.02562 * 13 2 1 15 15 C 1.50696 * 119.99863 * 359.97438 * 13 2 1 16 16 S 1.80994 * 109.47229 * 180.02562 * 15 13 2 17 17 C 1.76206 * 100.00212 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99510 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99655 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00188 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46966 * 90.00362 * 21 19 17 23 23 H 1.48506 * 109.47145 * 210.00307 * 21 19 17 24 24 H 1.48500 * 109.47551 * 330.00612 * 21 19 17 25 25 H 1.09005 * 109.47135 * 89.99799 * 1 2 3 26 26 H 1.09001 * 109.47497 * 209.99549 * 1 2 3 27 27 H 1.08995 * 109.47359 * 329.99727 * 1 2 3 28 28 H 1.08998 * 109.47323 * 330.00380 * 3 2 1 29 29 H 1.08994 * 109.47460 * 210.00070 * 3 2 1 30 30 H 1.08998 * 109.46857 * 59.99952 * 4 3 2 31 31 H 1.09002 * 109.46765 * 299.99978 * 4 3 2 32 32 H 0.96996 * 120.00517 * 0.02562 * 5 4 3 33 33 H 1.08003 * 119.91905 * 180.02562 * 8 7 6 34 34 H 1.08004 * 119.88650 * 179.72239 * 9 8 7 35 35 H 1.09004 * 109.47671 * 300.00808 * 15 13 2 36 36 H 1.09000 * 109.47071 * 60.00586 * 15 13 2 37 37 H 0.96994 * 120.00050 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1855 2.9787 1.4426 6 6 3.5330 3.5812 2.6475 7 7 3.2022 3.0093 3.7967 8 6 3.5348 3.5849 4.9406 9 6 4.2252 4.7806 4.9407 10 7 4.5578 5.3579 3.7971 11 6 4.2302 4.7908 2.6502 12 9 4.5690 5.3799 1.4824 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1673 -0.0001 15 6 1.3854 -2.4723 -0.0005 16 16 2.5615 -3.8480 -0.0005 17 6 1.4414 -5.2082 -0.0013 18 1 0.3762 -5.0305 -0.0012 19 6 1.9282 -6.5081 -0.0010 20 7 1.0915 -7.5242 -0.0010 21 14 3.7707 -6.8154 -0.0004 22 1 4.2585 -6.8967 1.3998 23 1 4.0597 -8.0930 -0.7003 24 1 4.4588 -5.7010 -0.7003 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6084 2.0284 -0.5138 29 1 3.1498 1.1384 -0.5138 30 1 3.0416 0.9507 1.9564 31 1 1.5000 1.8407 1.9564 32 1 3.4280 3.3988 0.6026 33 1 3.2655 3.1184 5.8767 34 1 4.4904 5.2488 5.8771 35 1 0.7589 -2.5303 0.8896 36 1 0.7585 -2.5299 -0.8903 37 1 1.4316 -8.4325 -0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101514708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:56 Heat of formation + Delta-G solvation = -40.404998 kcal Electronic energy + Delta-G solvation = -22555.966801 eV Core-core repulsion = 18794.935338 eV Total energy + Delta-G solvation = -3761.031463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.10546 -41.96004 -40.96291 -37.99230 -36.50488 -34.84341 -34.67393 -32.61214 -30.95201 -29.17555 -27.86368 -27.45588 -25.79450 -24.77114 -23.56548 -20.86401 -19.73901 -19.46714 -19.07791 -18.70885 -18.08252 -17.51275 -17.24760 -17.10036 -16.85668 -16.12749 -15.92726 -15.80321 -15.49095 -15.05096 -14.91465 -14.86901 -14.46418 -14.33436 -14.22412 -13.63060 -13.36887 -13.30603 -13.13341 -13.01455 -12.94404 -12.68348 -12.63764 -12.19749 -11.87313 -11.22778 -11.17570 -11.01695 -10.52620 -10.34267 -9.83016 -9.00836 -8.95910 -8.51890 -6.22686 -0.28677 0.05490 0.96063 1.30671 1.39362 1.46603 1.51706 1.71390 2.17621 2.24536 2.44556 2.57608 2.68584 2.86455 3.19258 3.22621 3.55826 3.80978 3.99333 4.01870 4.15792 4.26973 4.30292 4.36937 4.44942 4.50383 4.67599 4.73417 4.86110 4.96550 5.14446 5.44581 5.70718 5.73671 5.87327 6.11407 6.16130 6.33729 6.76758 6.93542 7.03843 8.60405 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.002494 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.375050 B =11223.609682 C =11656.160892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.605 5.605 3 C 0.109 3.891 4 C 0.129 3.871 5 N -0.701 5.701 6 C 0.344 3.656 7 N -0.502 5.502 8 C 0.106 3.894 9 C 0.017 3.983 10 N -0.455 5.455 11 C 0.172 3.828 12 F -0.115 7.115 13 C 0.532 3.468 14 O -0.559 6.559 15 C -0.106 4.106 16 S -0.181 6.181 17 C -0.526 4.526 18 H 0.064 0.936 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.238 1.238 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.423 0.577 33 H 0.216 0.784 34 H 0.215 0.785 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 27.230 6.867 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.339 5.339 3 C -0.015 4.015 4 C 0.004 3.996 5 N -0.336 5.336 6 C 0.102 3.898 7 N -0.225 5.225 8 C -0.055 4.055 9 C -0.143 4.143 10 N -0.175 5.175 11 C 0.008 3.992 12 F -0.094 7.094 13 C 0.319 3.681 14 O -0.437 6.437 15 C -0.256 4.256 16 S 0.045 5.955 17 C -0.673 4.673 18 H 0.082 0.918 19 C -0.160 4.160 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.184 1.184 24 H -0.162 1.162 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.261 0.739 33 H 0.232 0.768 34 H 0.231 0.769 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.107 26.873 6.769 27.734 hybrid contribution -0.700 -0.499 -0.560 1.026 sum 0.407 26.373 6.209 27.098 Atomic orbital electron populations 1.22178 0.76343 1.05005 1.03800 1.47651 1.08636 1.04164 1.73469 1.21593 0.98947 0.85447 0.95476 1.21527 0.96412 0.83836 0.97862 1.44322 1.60767 1.24255 1.04250 1.19119 0.92574 0.88851 0.89235 1.68202 1.23240 1.33525 0.97570 1.24281 0.91730 0.92710 0.96769 1.23898 0.99346 0.95251 0.95836 1.67631 1.17606 1.33845 0.98379 1.18432 1.04984 0.92608 0.83211 1.91583 1.90904 1.83995 1.42964 1.20094 0.87272 0.85443 0.75245 1.90694 1.15391 1.87398 1.50221 1.23282 1.01716 0.93370 1.07258 1.84759 1.13971 0.99146 1.97576 1.22433 0.94392 0.92371 1.58140 0.91756 1.25541 1.02604 0.94837 0.92974 1.70007 1.36709 0.99523 1.49168 0.85888 0.80396 0.80049 0.80168 1.18777 1.18372 1.16160 0.90553 0.90651 0.87960 0.85856 0.90724 0.94123 0.90271 0.73851 0.76751 0.76888 0.86847 0.86831 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.24 127.77 1.31 2.26 16 2 N -0.61 -13.32 2.87 -846.77 -2.43 -15.76 16 3 C 0.11 1.91 5.52 86.38 0.48 2.39 16 4 C 0.13 2.47 6.04 86.38 0.52 2.99 16 5 N -0.70 -12.43 5.71 -344.41 -1.97 -14.40 16 6 C 0.34 7.03 7.50 133.09 1.00 8.03 16 7 N -0.50 -9.91 9.73 -192.42 -1.87 -11.78 16 8 C 0.11 1.31 11.21 84.58 0.95 2.26 16 9 C 0.02 0.21 11.21 84.57 0.95 1.16 16 10 N -0.46 -9.07 10.50 -195.79 -2.06 -11.12 16 11 C 0.17 3.64 8.47 84.99 0.72 4.36 16 12 F -0.11 -2.44 16.68 44.97 0.75 -1.69 16 13 C 0.53 17.74 7.69 87.65 0.67 18.41 16 14 O -0.56 -23.35 15.44 -3.03 -0.05 -23.40 16 15 C -0.11 -3.87 4.71 71.23 0.34 -3.53 16 16 S -0.18 -9.07 18.55 -56.49 -1.05 -10.12 16 17 C -0.53 -30.23 10.04 67.95 0.68 -29.55 16 18 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 19 C 0.05 2.68 5.50 84.86 0.47 3.14 16 20 N -0.92 -55.35 13.97 21.65 0.30 -55.05 16 21 Si 0.91 44.86 27.74 68.60 1.90 46.77 16 22 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 25 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.07 1.15 6.44 -2.39 -0.02 1.14 16 27 H 0.10 0.84 8.07 -2.39 -0.02 0.82 16 28 H 0.12 1.21 8.07 -2.39 -0.02 1.19 16 29 H 0.07 1.63 7.42 -2.39 -0.02 1.61 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.42 5.89 7.96 -92.71 -0.74 5.16 16 33 H 0.22 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.11 3.81 7.40 -2.39 -0.02 3.79 16 36 H 0.11 3.81 8.11 -2.40 -0.02 3.79 16 37 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -79.81 340.63 1.95 -77.86 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.34 Total: 6.76 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 8.08 Total: 11.93 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -8.03 Total: -108.11 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.75 Total: -1.69 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.12 kcal Total: -79.81 1.95 -77.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101514708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.454 kcal (2) G-P(sol) polarization free energy of solvation -79.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds