Wall clock time and date at job start Tue Mar 31 2020 10:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32571 * 1 3 3 C 1.47819 * 119.99757 * 2 1 4 4 C 1.39528 * 120.14246 * 0.24845 * 3 2 1 5 5 C 1.37976 * 119.85670 * 180.21232 * 4 3 2 6 6 C 1.38347 * 120.13851 * 359.51193 * 5 4 3 7 7 C 1.50697 * 119.85475 * 180.25312 * 6 5 4 8 8 N 1.46507 * 109.46878 * 90.00440 * 7 6 5 9 9 C 1.38406 * 119.99955 * 179.97438 * 8 7 6 10 10 N 1.32750 * 119.44098 * 359.72764 * 9 8 7 11 11 C 1.31463 * 121.74368 * 179.74944 * 10 9 8 12 12 C 1.40791 * 120.38932 * 0.52405 * 11 10 9 13 13 C 1.41197 * 120.56688 * 179.76336 * 12 11 10 14 14 H 1.07998 * 119.99871 * 335.69310 * 13 12 11 15 15 C 1.39859 * 120.00105 * 155.68552 * 13 12 11 16 16 N 1.30904 * 120.00228 * 343.26376 * 15 13 12 17 17 Si 1.86806 * 120.00172 * 163.25976 * 15 13 12 18 18 H 1.48505 * 109.46731 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46895 * 120.00319 * 17 15 13 20 20 H 1.48503 * 109.46899 * 240.00537 * 17 15 13 21 21 C 1.41278 * 118.86728 * 359.74385 * 12 11 10 22 22 C 1.36668 * 118.40213 * 359.97438 * 21 12 11 23 23 Cl 1.73603 * 120.26233 * 179.97438 * 22 21 12 24 24 C 1.38342 * 120.28880 * 0.27974 * 6 5 4 25 25 C 1.37973 * 120.13840 * 359.95489 * 24 6 5 26 26 H 1.07997 * 120.00124 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99899 * 0.02562 * 1 2 3 28 28 H 1.07992 * 120.00038 * 179.97438 * 2 1 3 29 29 H 1.07999 * 120.07837 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.93027 * 179.79165 * 5 4 3 31 31 H 1.08994 * 109.47424 * 210.00159 * 7 6 5 32 32 H 1.09000 * 109.47527 * 330.00489 * 7 6 5 33 33 H 0.96997 * 120.00177 * 359.97438 * 8 7 6 34 34 H 1.08006 * 119.80680 * 180.24653 * 11 10 9 35 35 H 0.96996 * 120.00125 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.79698 * 180.02562 * 21 12 11 37 37 H 1.07993 * 119.93329 * 179.97438 * 24 6 5 38 38 H 1.08006 * 120.07453 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 1.3701 2.4902 0.0052 5 6 2.0658 3.6817 0.0008 6 6 3.4493 3.6782 0.0013 7 6 4.2027 4.9833 0.0022 8 7 4.4464 5.4056 1.3838 9 6 5.1271 6.5836 1.6375 10 7 5.5591 7.3197 0.6207 11 6 6.2059 8.4484 0.8096 12 6 6.4711 8.9077 2.1138 13 6 7.1699 10.1170 2.3210 14 1 7.8332 10.4951 1.5571 15 6 7.0031 10.8254 3.5153 16 7 5.9820 10.5666 4.2926 17 14 8.2372 12.1407 4.0015 18 1 9.2909 12.2400 2.9597 19 1 7.5434 13.4474 4.1293 20 1 8.8582 11.7805 5.3015 21 6 6.0257 8.1382 3.2117 22 6 5.3527 6.9756 2.9602 23 17 4.7843 5.9922 4.2731 24 6 4.1440 2.4819 0.0005 25 6 3.4601 1.2836 0.0001 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8657 -0.9352 0.0004 29 1 0.2901 2.4943 0.0097 30 1 1.5293 4.6190 0.0014 31 1 5.1553 4.8533 -0.5113 32 1 3.6139 5.7433 -0.5114 33 1 4.1307 4.8595 2.1207 34 1 6.5399 9.0246 -0.0407 35 1 5.8665 11.0577 5.1211 36 1 6.2117 8.4614 4.2252 37 1 5.2240 2.4859 0.0005 38 1 4.0035 0.3503 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157777495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:26 Heat of formation + Delta-G solvation = 61.769157 kcal Electronic energy + Delta-G solvation = -21750.639619 eV Core-core repulsion = 18390.471526 eV Total energy + Delta-G solvation = -3360.168092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.088 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -39.55715 -38.66441 -35.74850 -35.54343 -34.31295 -33.27535 -31.09392 -30.52899 -30.42212 -28.73733 -25.96780 -24.46716 -23.03284 -22.30143 -21.42574 -20.92115 -19.78511 -17.47038 -17.12526 -16.49048 -15.88120 -15.49245 -15.03796 -14.89790 -14.28702 -14.14081 -13.78615 -13.56329 -13.32701 -13.27457 -12.95534 -12.74603 -12.27964 -12.13378 -11.80329 -11.66932 -11.42412 -11.23213 -11.04519 -10.97441 -10.90547 -10.73389 -10.45619 -10.37227 -9.84881 -9.52399 -8.99823 -8.83990 -8.39517 -8.21934 -8.12543 -6.93804 -6.70101 -4.32394 0.77253 1.37387 2.34439 2.49617 2.78599 3.05319 3.10064 3.15651 3.19603 3.75631 3.88783 4.38443 4.55160 4.56031 4.66027 4.89513 4.93348 5.03602 5.31921 5.38947 5.50787 5.55658 5.82042 5.85334 5.93949 6.04988 6.11087 6.17449 6.19307 6.37948 6.43436 6.62091 6.62986 6.68942 6.91649 6.93761 7.05666 7.14433 7.63092 7.67689 8.08357 8.34528 8.40615 8.66563 8.71726 9.51248 10.11915 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.031777 B = 0.002634 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.920440 B =10627.414341 C =11066.897426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.114 4.114 3 C -0.066 4.066 4 C -0.116 4.116 5 C -0.100 4.100 6 C -0.092 4.092 7 C 0.186 3.814 8 N -0.737 5.737 9 C 0.291 3.709 10 N -0.503 5.503 11 C 0.015 3.985 12 C 0.037 3.963 13 C -0.451 4.451 14 H 0.083 0.917 15 C 0.072 3.928 16 N -0.799 5.799 17 Si 0.910 3.090 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.272 1.272 21 C -0.087 4.087 22 C -0.102 4.102 23 Cl -0.115 7.115 24 C -0.101 4.101 25 C -0.111 4.111 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.398 0.602 34 H 0.135 0.865 35 H 0.282 0.718 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -14.159 -4.792 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.131 4.131 3 C -0.066 4.066 4 C -0.134 4.134 5 C -0.119 4.119 6 C -0.093 4.093 7 C 0.061 3.939 8 N -0.378 5.378 9 C 0.057 3.943 10 N -0.219 5.219 11 C -0.143 4.143 12 C 0.032 3.968 13 C -0.482 4.482 14 H 0.101 0.899 15 C -0.145 4.145 16 N -0.425 5.425 17 Si 0.735 3.265 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.197 1.197 21 C -0.114 4.114 22 C -0.135 4.135 23 Cl -0.087 7.087 24 C -0.120 4.120 25 C -0.129 4.129 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.234 0.766 34 H 0.152 0.848 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.143 0.857 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.718 -14.402 -5.501 16.817 hybrid contribution 0.422 0.661 1.634 1.812 sum -6.295 -13.741 -3.868 15.601 Atomic orbital electron populations 1.24350 0.95735 1.02198 0.99894 1.21820 0.95210 0.95794 1.00323 1.19105 0.93397 0.93037 1.01070 1.21266 0.99723 0.91770 1.00660 1.21081 0.93742 0.98124 0.98924 1.20249 0.93913 0.95474 0.99646 1.19811 0.98142 0.90625 0.85303 1.43759 1.65094 1.23332 1.05634 1.17412 0.99664 0.90176 0.87028 1.66759 1.14774 1.08044 1.32332 1.22361 1.02267 0.93758 0.95940 1.18314 0.93701 0.94107 0.90716 1.19359 1.23083 1.04332 1.01441 0.89887 1.25904 0.94850 0.97988 0.95748 1.69799 1.24153 1.37226 1.11281 0.86220 0.81035 0.79892 0.79375 1.18341 1.20002 1.19733 1.21310 0.98220 0.90539 1.01360 1.20921 1.09642 0.97091 0.85831 1.98243 1.88971 1.71345 1.50110 1.21081 1.00178 0.91704 0.99004 1.21234 0.93216 0.98060 1.00420 0.87906 0.88030 0.86562 0.85881 0.85669 0.92110 0.92120 0.76640 0.84789 0.90720 0.84255 0.85670 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 14.15 28.83 0.41 -1.02 16 2 C -0.11 -1.01 9.91 -37.57 -0.37 -1.38 16 3 C -0.07 -0.72 5.87 -105.01 -0.62 -1.34 16 4 C -0.12 -1.30 9.40 -39.20 -0.37 -1.67 16 5 C -0.10 -1.25 9.68 -39.64 -0.38 -1.64 16 6 C -0.09 -1.25 5.25 -104.54 -0.55 -1.80 16 7 C 0.19 2.97 5.78 -5.19 -0.03 2.94 16 8 N -0.74 -13.70 5.63 -61.50 -0.35 -14.05 16 9 C 0.29 6.49 7.48 -155.05 -1.16 5.33 16 10 N -0.50 -11.70 9.52 -11.75 -0.11 -11.81 16 11 C 0.02 0.37 10.97 -16.75 -0.18 0.18 16 12 C 0.04 0.95 5.59 -106.65 -0.60 0.35 16 13 C -0.45 -11.32 9.07 -37.85 -0.34 -11.67 16 14 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 15 C 0.07 1.74 5.18 -17.34 -0.09 1.65 16 16 N -0.80 -19.99 10.91 55.54 0.61 -19.38 16 17 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.09 -2.19 8.52 -38.99 -0.33 -2.52 16 22 C -0.10 -2.37 6.32 -39.57 -0.25 -2.62 16 23 Cl -0.11 -2.27 27.56 -51.86 -1.43 -3.70 16 24 C -0.10 -1.24 9.68 -39.64 -0.38 -1.63 16 25 C -0.11 -1.22 9.79 -39.20 -0.38 -1.61 16 26 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 27 H 0.10 0.75 6.04 -52.49 -0.32 0.43 16 28 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.12 1.13 6.17 -52.49 -0.32 0.81 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.40 7.06 7.07 -40.82 -0.29 6.77 16 34 H 0.13 2.93 8.06 -52.48 -0.42 2.50 16 35 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 36 H 0.14 3.63 6.20 -52.49 -0.33 3.31 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -26.83 343.35 -10.95 -37.78 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -4.18 Total: 11.38 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -5.63 Total: -18.41 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.15 Total: -45.24 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -1.43 Total: -3.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.83 -10.95 -37.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157777495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.553 kcal (2) G-P(sol) polarization free energy of solvation -26.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds