Wall clock time and date at job start Tue Mar 31 2020 10:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21290 * 119.99852 * 2 1 4 4 N 1.34775 * 119.99716 * 180.02562 * 2 1 3 5 5 C 1.40213 * 119.99745 * 185.07024 * 4 2 1 6 6 C 1.38811 * 120.00364 * 33.12697 * 5 4 2 7 7 C 1.38074 * 120.02741 * 179.97438 * 6 5 4 8 8 C 1.38918 * 120.03878 * 359.97438 * 7 6 5 9 9 N 1.39894 * 120.00025 * 180.02562 * 8 7 6 10 10 C 1.38255 * 119.99832 * 180.55314 * 9 8 7 11 11 C 1.39015 * 120.00575 * 299.04207 * 10 9 8 12 12 H 1.08003 * 120.00003 * 152.66503 * 11 10 9 13 13 C 1.40825 * 119.99812 * 332.66706 * 11 10 9 14 14 N 1.30346 * 119.99986 * 353.63070 * 13 11 10 15 15 Si 1.86797 * 120.00044 * 173.63005 * 13 11 10 16 16 H 1.48498 * 109.47352 * 59.99931 * 15 13 11 17 17 H 1.48500 * 109.47147 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47045 * 300.00014 * 15 13 11 19 19 C 1.41179 * 119.99478 * 119.04220 * 10 9 8 20 20 C 1.43196 * 120.00156 * 354.83875 * 19 10 9 21 21 N 8.37003 * 165.92447 * 289.92722 * 2 1 3 22 22 C 1.43205 * 119.99827 * 174.55745 * 19 10 9 23 23 N 9.36235 * 160.97522 * 312.15975 * 4 1 2 24 24 C 1.38896 * 120.00393 * 0.26621 * 8 7 6 25 25 C 1.38231 * 119.96989 * 359.48001 * 24 8 7 26 26 F 1.35109 * 120.01878 * 180.24281 * 25 24 8 27 27 H 1.08997 * 109.46703 * 240.00002 * 1 2 3 28 28 H 1.09002 * 109.47116 * 359.97438 * 1 2 3 29 29 H 1.08990 * 109.47016 * 120.00297 * 1 2 3 30 30 H 0.97000 * 120.00190 * 5.06564 * 4 2 1 31 31 H 1.07997 * 119.98655 * 359.97438 * 6 5 4 32 32 H 1.07997 * 119.98064 * 179.97438 * 7 6 5 33 33 H 0.96992 * 119.99714 * 0.55820 * 9 8 7 34 34 H 0.97004 * 119.99887 * 185.00745 * 14 13 11 35 35 H 1.08001 * 120.01732 * 179.72528 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5789 -1.1696 0.1068 6 6 4.2190 -0.1945 0.8592 7 6 5.5957 -0.1967 0.9657 8 6 6.3414 -1.1751 0.3204 9 7 7.7361 -1.1769 0.4292 10 6 8.4791 -2.1439 -0.2223 11 6 8.2943 -3.4870 0.0851 12 1 8.4993 -4.2440 -0.6574 13 6 7.8397 -3.8603 1.3646 14 7 7.7109 -2.9604 2.2987 15 14 7.4213 -5.6452 1.7231 16 1 8.6250 -6.4883 1.5099 17 1 6.9690 -5.7743 3.1316 18 1 6.3366 -6.0918 0.8125 19 6 9.4254 -1.7672 -1.1999 20 6 9.5383 -0.3958 -1.5962 21 7 9.6258 0.6938 -1.9137 22 6 10.2765 -2.7557 -1.7909 23 7 10.9511 -3.5367 -2.2639 24 6 5.7028 -2.1486 -0.4370 25 6 4.3243 -2.1497 -0.5394 26 9 3.7017 -3.0992 -1.2719 27 1 -0.3632 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 1.6987 -2.0056 -0.0751 31 1 3.6401 0.5663 1.3616 32 1 6.0929 0.5626 1.5509 33 1 8.1818 -0.4999 0.9618 34 1 7.4680 -3.2273 3.1991 35 1 6.2827 -2.9067 -0.9423 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:21 Heat of formation + Delta-G solvation = 2.658036 kcal Electronic energy + Delta-G solvation = -24887.312805 eV Core-core repulsion = 20992.704743 eV Total energy + Delta-G solvation = -3894.608061 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.092 amu Computer time = -0.73 seconds Orbital eigenvalues (eV) -48.56293 -40.19474 -38.89242 -36.89761 -35.36329 -34.75014 -34.45813 -33.29287 -31.02377 -30.23815 -29.78325 -27.20078 -27.05549 -23.22042 -22.09237 -21.41188 -20.29369 -19.03642 -17.91552 -17.50742 -17.25457 -16.84015 -16.26132 -15.91273 -15.31129 -15.05001 -14.94433 -14.90453 -14.11917 -13.88570 -13.36971 -13.03416 -12.84425 -12.80937 -12.65510 -12.48558 -12.36006 -12.21791 -11.94425 -11.83217 -11.69132 -11.66892 -11.55721 -11.21105 -11.10390 -10.93785 -10.80553 -10.43669 -10.06949 -9.86035 -9.14924 -8.38884 -8.10300 -7.71233 -6.63083 -5.50516 1.57284 1.70868 2.17389 2.65739 2.68656 2.71624 2.85449 3.13381 3.37453 3.78486 3.89932 4.02208 4.13716 4.23274 4.33794 4.64320 4.65999 5.03141 5.10528 5.13665 5.24948 5.51029 5.55519 5.60610 5.78126 5.84600 6.12631 6.20217 6.27444 6.46276 6.54456 6.65052 6.79446 7.00306 7.15092 7.34777 7.42630 7.62241 7.74847 8.14005 8.23691 8.44224 8.92192 9.08392 9.19450 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.004859 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.563763 B = 5761.172322 C = 6885.420660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.531 6.531 4 N -0.665 5.665 5 C 0.032 3.968 6 C -0.048 4.048 7 C -0.186 4.186 8 C 0.273 3.727 9 N -0.654 5.654 10 C 0.384 3.616 11 C -0.388 4.388 12 H 0.110 0.890 13 C 0.075 3.925 14 N -0.722 5.722 15 Si 0.921 3.079 16 H -0.253 1.253 17 H -0.269 1.269 18 H -0.250 1.250 19 C -0.302 4.302 20 C 0.308 3.692 21 N -0.529 5.529 22 C 0.325 3.675 23 N -0.529 5.529 24 C -0.203 4.203 25 C 0.115 3.885 26 F -0.144 7.144 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.407 0.593 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.405 0.595 34 H 0.302 0.698 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -2.123 5.965 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.407 6.407 4 N -0.310 5.310 5 C -0.063 4.063 6 C -0.069 4.069 7 C -0.209 4.209 8 C 0.167 3.833 9 N -0.274 5.274 10 C 0.279 3.721 11 C -0.416 4.416 12 H 0.128 0.872 13 C -0.156 4.156 14 N -0.341 5.341 15 Si 0.743 3.257 16 H -0.177 1.177 17 H -0.193 1.193 18 H -0.174 1.174 19 C -0.321 4.321 20 C 0.000 4.000 21 N -0.211 5.211 22 C 0.016 3.984 23 N -0.211 5.211 24 C -0.227 4.227 25 C 0.093 3.907 26 F -0.122 7.122 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.242 0.758 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.242 0.758 34 H 0.114 0.886 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.950 -0.919 4.896 14.813 hybrid contribution -0.625 -1.248 0.742 1.581 sum -14.575 -2.167 5.638 15.777 Atomic orbital electron populations 1.21905 0.91243 1.05651 1.04334 1.20894 0.90637 0.83300 0.75805 1.90740 1.70529 1.31193 1.48265 1.43301 1.05117 1.09497 1.73109 1.17319 0.82516 1.00952 1.05536 1.20556 0.93750 0.96904 0.95695 1.20448 0.93090 1.01472 1.05930 1.17268 0.83241 0.91754 0.91031 1.41616 1.02122 1.31429 1.52186 1.16750 0.84664 0.87224 0.83433 1.20258 1.30326 0.93324 0.97672 0.87171 1.26418 0.91454 1.01998 0.95745 1.69440 1.24062 1.37118 1.03432 0.86033 0.81082 0.79484 0.79141 1.17684 1.19300 1.17350 1.13069 1.15840 0.82679 1.20473 1.25293 0.91409 0.91962 0.91334 1.81175 1.13395 1.12466 1.14092 1.24655 0.90905 0.91871 0.90922 1.81028 1.14813 1.10776 1.14512 1.20737 0.91810 1.03418 1.06715 1.17128 0.90259 0.88850 0.94454 1.91428 1.82795 1.62778 1.75247 0.89272 0.88790 0.89331 0.75775 0.84693 0.85587 0.75792 0.88580 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.32 36.01 0.37 -0.82 16 2 C 0.51 6.18 7.68 -10.98 -0.08 6.10 16 3 O -0.53 -8.81 14.75 5.55 0.08 -8.73 16 4 N -0.66 -8.14 5.25 -9.76 -0.05 -8.19 16 5 C 0.03 0.50 6.30 -83.51 -0.53 -0.03 16 6 C -0.05 -0.78 8.65 -39.43 -0.34 -1.12 16 7 C -0.19 -3.04 9.89 -39.39 -0.39 -3.43 16 8 C 0.27 4.84 5.72 -83.68 -0.48 4.36 16 9 N -0.65 -11.95 3.26 -8.15 -0.03 -11.97 16 10 C 0.38 7.60 5.04 -83.56 -0.42 7.18 16 11 C -0.39 -7.54 6.31 -38.32 -0.24 -7.78 16 12 H 0.11 2.17 7.28 -52.48 -0.38 1.79 16 13 C 0.07 1.35 4.96 -17.20 -0.09 1.27 16 14 N -0.72 -12.99 11.45 55.59 0.64 -12.35 16 15 Si 0.92 14.38 29.57 -169.99 -5.03 9.36 16 16 H -0.25 -4.09 7.11 56.52 0.40 -3.69 16 17 H -0.27 -4.08 7.11 56.52 0.40 -3.68 16 18 H -0.25 -3.95 7.11 56.52 0.40 -3.55 16 19 C -0.30 -6.43 5.88 -104.93 -0.62 -7.05 16 20 C 0.31 6.84 14.83 -22.40 -0.33 6.51 16 21 N -0.53 -12.36 18.55 41.93 0.78 -11.58 16 22 C 0.32 7.28 14.05 -22.50 -0.32 6.97 16 23 N -0.53 -12.39 18.53 41.81 0.77 -11.61 16 24 C -0.20 -3.64 8.65 -39.34 -0.34 -3.99 16 25 C 0.12 1.91 7.30 -39.28 -0.29 1.63 16 26 F -0.14 -2.28 16.93 2.25 0.04 -2.24 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.41 3.76 8.63 -40.82 -0.35 3.41 16 31 H 0.14 2.12 6.39 -52.49 -0.34 1.79 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.41 7.07 8.83 -40.82 -0.36 6.71 16 34 H 0.30 4.99 8.29 -40.82 -0.34 4.65 16 35 H 0.15 2.83 5.86 -52.49 -0.31 2.53 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -26.43 332.93 -4.43 -30.86 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -2.56 Total: 11.65 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -4.09 Total: 9.80 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 2.11 Total: -55.71 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 14.38 SS G_CDS: -5.03 Total: 9.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.43 -4.43 -30.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.515 kcal (2) G-P(sol) polarization free energy of solvation -26.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.73 seconds