Wall clock time and date at job start Tue Mar 31 2020 10:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21290 * 119.99852 * 2 1 4 4 N 1.34775 * 119.99716 * 180.02562 * 2 1 3 5 5 C 1.40213 * 119.99745 * 185.07024 * 4 2 1 6 6 C 1.38811 * 120.00364 * 33.12697 * 5 4 2 7 7 C 1.38074 * 120.02741 * 179.97438 * 6 5 4 8 8 C 1.38918 * 120.03878 * 359.97438 * 7 6 5 9 9 N 1.39894 * 120.00025 * 180.02562 * 8 7 6 10 10 C 1.38255 * 119.99832 * 180.55314 * 9 8 7 11 11 C 1.39015 * 120.00575 * 299.04207 * 10 9 8 12 12 H 1.08003 * 120.00003 * 152.66503 * 11 10 9 13 13 C 1.40825 * 119.99812 * 332.66706 * 11 10 9 14 14 N 1.30346 * 119.99986 * 353.63070 * 13 11 10 15 15 Si 1.86797 * 120.00044 * 173.63005 * 13 11 10 16 16 H 1.48498 * 109.47352 * 59.99931 * 15 13 11 17 17 H 1.48500 * 109.47147 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47045 * 300.00014 * 15 13 11 19 19 C 1.41179 * 119.99478 * 119.04220 * 10 9 8 20 20 C 1.43196 * 120.00156 * 354.83875 * 19 10 9 21 21 N 8.37003 * 165.92447 * 289.92722 * 2 1 3 22 22 C 1.43205 * 119.99827 * 174.55745 * 19 10 9 23 23 N 9.36235 * 160.97522 * 312.15975 * 4 1 2 24 24 C 1.38896 * 120.00393 * 0.26621 * 8 7 6 25 25 C 1.38231 * 119.96989 * 359.48001 * 24 8 7 26 26 F 1.35109 * 120.01878 * 180.24281 * 25 24 8 27 27 H 1.08997 * 109.46703 * 240.00002 * 1 2 3 28 28 H 1.09002 * 109.47116 * 359.97438 * 1 2 3 29 29 H 1.08990 * 109.47016 * 120.00297 * 1 2 3 30 30 H 0.97000 * 120.00190 * 5.06564 * 4 2 1 31 31 H 1.07997 * 119.98655 * 359.97438 * 6 5 4 32 32 H 1.07997 * 119.98064 * 179.97438 * 7 6 5 33 33 H 0.96992 * 119.99714 * 0.55820 * 9 8 7 34 34 H 0.97004 * 119.99887 * 185.00745 * 14 13 11 35 35 H 1.08001 * 120.01732 * 179.72528 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5789 -1.1696 0.1068 6 6 4.2190 -0.1945 0.8592 7 6 5.5957 -0.1967 0.9657 8 6 6.3414 -1.1751 0.3204 9 7 7.7361 -1.1769 0.4292 10 6 8.4791 -2.1439 -0.2223 11 6 8.2943 -3.4870 0.0851 12 1 8.4993 -4.2440 -0.6574 13 6 7.8397 -3.8603 1.3646 14 7 7.7109 -2.9604 2.2987 15 14 7.4213 -5.6452 1.7231 16 1 8.6250 -6.4883 1.5099 17 1 6.9690 -5.7743 3.1316 18 1 6.3366 -6.0918 0.8125 19 6 9.4254 -1.7672 -1.1999 20 6 9.5383 -0.3958 -1.5962 21 7 9.6258 0.6938 -1.9137 22 6 10.2765 -2.7557 -1.7909 23 7 10.9511 -3.5367 -2.2639 24 6 5.7028 -2.1486 -0.4370 25 6 4.3243 -2.1497 -0.5394 26 9 3.7017 -3.0992 -1.2719 27 1 -0.3632 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 1.6987 -2.0056 -0.0751 31 1 3.6401 0.5663 1.3616 32 1 6.0929 0.5626 1.5509 33 1 8.1818 -0.4999 0.9618 34 1 7.4680 -3.2273 3.1991 35 1 6.2827 -2.9067 -0.9423 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:19 Heat of formation + Delta-G solvation = -11.540390 kcal Electronic energy + Delta-G solvation = -24887.928495 eV Core-core repulsion = 20992.704743 eV Total energy + Delta-G solvation = -3895.223751 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.092 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.84864 -41.32425 -40.20909 -38.32838 -36.98152 -36.52006 -35.74229 -34.67686 -32.36710 -31.50488 -30.79959 -28.77977 -28.26556 -24.53744 -23.39231 -22.80659 -21.44180 -20.60511 -19.22704 -18.81564 -18.71284 -17.93973 -17.68488 -17.17128 -16.58575 -16.29411 -16.25422 -16.07933 -15.27295 -15.18697 -14.70924 -14.46331 -14.38491 -14.19866 -13.87081 -13.75886 -13.49751 -13.44482 -13.39850 -13.25152 -13.11864 -13.08824 -12.97905 -12.73767 -12.64641 -12.45623 -12.08649 -11.79206 -11.45115 -10.95189 -10.44206 -9.72025 -9.60883 -9.12319 -8.00861 -7.12453 0.25863 0.35242 0.76637 1.39002 1.49631 1.54744 1.67953 2.03875 2.09263 2.16646 2.22837 2.33955 2.60233 2.78593 2.86804 3.32567 3.39748 3.81915 3.84783 3.98148 4.27927 4.40481 4.55616 4.58876 4.64480 4.69834 4.74499 4.85554 5.13281 5.15178 5.24592 5.33927 5.43353 5.52738 5.69716 5.99173 6.08198 6.24490 6.48538 6.77310 6.97870 7.19669 7.20156 7.34027 7.77515 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.004859 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.563763 B = 5761.172322 C = 6885.420660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.501 3.499 3 O -0.579 6.579 4 N -0.658 5.658 5 C 0.039 3.961 6 C -0.053 4.053 7 C -0.183 4.183 8 C 0.257 3.743 9 N -0.654 5.654 10 C 0.380 3.620 11 C -0.382 4.382 12 H 0.105 0.895 13 C 0.052 3.948 14 N -0.721 5.721 15 Si 0.970 3.030 16 H -0.261 1.261 17 H -0.255 1.255 18 H -0.252 1.252 19 C -0.319 4.319 20 C 0.316 3.684 21 N -0.557 5.557 22 C 0.330 3.670 23 N -0.555 5.555 24 C -0.216 4.216 25 C 0.109 3.891 26 F -0.140 7.140 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.423 0.577 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.407 0.593 34 H 0.313 0.687 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 -2.994 7.275 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.292 3.708 3 O -0.459 6.459 4 N -0.305 5.305 5 C -0.057 4.057 6 C -0.074 4.074 7 C -0.206 4.206 8 C 0.153 3.847 9 N -0.274 5.274 10 C 0.275 3.725 11 C -0.410 4.410 12 H 0.123 0.877 13 C -0.179 4.179 14 N -0.339 5.339 15 Si 0.789 3.211 16 H -0.185 1.185 17 H -0.179 1.179 18 H -0.176 1.176 19 C -0.338 4.338 20 C 0.010 3.990 21 N -0.240 5.240 22 C 0.023 3.977 23 N -0.238 5.238 24 C -0.239 4.239 25 C 0.087 3.913 26 F -0.118 7.118 27 H 0.135 0.865 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.261 0.739 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.244 0.756 34 H 0.126 0.874 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.471 -1.793 6.215 17.696 hybrid contribution -0.010 -1.009 0.432 1.098 sum -16.481 -2.803 6.647 17.991 Atomic orbital electron populations 1.21936 0.86610 1.06594 1.06798 1.21924 0.92692 0.82207 0.73972 1.90724 1.71920 1.32824 1.50414 1.43393 1.03758 1.10715 1.72678 1.17434 0.84314 0.99858 1.04125 1.20669 0.93676 0.97111 0.95919 1.20630 0.93322 1.01199 1.05430 1.17364 0.82962 0.92462 0.91910 1.41503 1.02290 1.31276 1.52376 1.16714 0.84676 0.87775 0.83300 1.20434 1.29264 0.93091 0.98172 0.87716 1.26892 0.91367 1.04597 0.95059 1.69422 1.22292 1.38234 1.03949 0.85318 0.80343 0.75839 0.79552 1.18488 1.17877 1.17569 1.13127 1.16904 0.82024 1.21735 1.25419 0.90787 0.92022 0.90772 1.81162 1.14497 1.13121 1.15220 1.24838 0.90632 0.91714 0.90529 1.81011 1.15804 1.11477 1.15508 1.20725 0.92480 1.03553 1.07175 1.17115 0.89972 0.89408 0.94853 1.91433 1.82595 1.62639 1.75164 0.86467 0.88685 0.86905 0.73874 0.84316 0.84222 0.75573 0.87431 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.32 71.24 0.74 -0.91 16 2 C 0.50 11.15 7.68 87.66 0.67 11.83 16 3 O -0.58 -18.60 14.75 -3.06 -0.05 -18.65 16 4 N -0.66 -14.63 5.25 -303.17 -1.59 -16.22 16 5 C 0.04 1.16 6.30 38.13 0.24 1.40 16 6 C -0.05 -1.64 8.65 22.37 0.19 -1.45 16 7 C -0.18 -5.83 9.89 22.39 0.22 -5.61 16 8 C 0.26 9.03 5.72 38.17 0.22 9.25 16 9 N -0.65 -23.84 3.26 -179.70 -0.59 -24.43 16 10 C 0.38 15.13 5.04 39.04 0.20 15.32 16 11 C -0.38 -14.74 6.31 23.09 0.15 -14.59 16 12 H 0.10 4.13 7.28 -2.91 -0.02 4.10 16 13 C 0.05 1.81 4.96 85.55 0.42 2.23 16 14 N -0.72 -24.79 11.45 21.98 0.25 -24.54 16 15 Si 0.97 27.89 29.57 68.60 2.03 29.92 16 16 H -0.26 -7.83 7.11 99.48 0.71 -7.13 16 17 H -0.26 -6.79 7.11 99.48 0.71 -6.08 16 18 H -0.25 -7.33 7.11 99.48 0.71 -6.62 16 19 C -0.32 -13.77 5.88 -20.06 -0.12 -13.89 16 20 C 0.32 14.30 14.83 88.30 1.31 15.61 16 21 N -0.56 -26.38 18.55 19.03 0.35 -26.03 16 22 C 0.33 15.01 14.05 88.34 1.24 16.25 16 23 N -0.55 -26.28 18.53 19.00 0.35 -25.93 16 24 C -0.22 -7.66 8.65 22.43 0.19 -7.47 16 25 C 0.11 3.50 7.30 22.47 0.16 3.66 16 26 F -0.14 -4.23 16.93 44.97 0.76 -3.47 16 27 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 29 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.42 6.58 8.63 -92.71 -0.80 5.79 16 31 H 0.14 4.22 6.39 -2.91 -0.02 4.21 16 32 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.41 14.19 8.83 -92.71 -0.82 13.37 16 34 H 0.31 9.63 8.29 -92.71 -0.77 8.86 16 35 H 0.14 5.26 5.86 -2.91 -0.02 5.24 16 Total: -1.00 -56.73 332.93 6.96 -49.77 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.41 Total: 27.94 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 5.84 Total: 31.63 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -1.22 Total: -117.14 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.76 Total: -3.47 kcal Atomic # 14 Polarization: 27.89 SS G_CDS: 2.03 Total: 29.92 kcal Total: -56.73 6.96 -49.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.233 kcal (2) G-P(sol) polarization free energy of solvation -56.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds