Wall clock time and date at job start Tue Mar 31 2020 10:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.50701 * 109.46921 * 66.04817 * 3 2 1 5 5 C 1.33571 * 126.01757 * 89.99909 * 4 3 2 6 6 N 1.31867 * 114.51125 * 179.97438 * 5 4 3 7 7 C 1.29139 * 117.07309 * 0.02562 * 6 5 4 8 8 Cl 1.73603 * 124.91750 * 180.02562 * 7 6 5 9 9 S 1.70978 * 110.15643 * 359.72154 * 7 6 5 10 10 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 11 11 C 1.52999 * 109.47184 * 58.95285 * 10 2 1 12 12 C 1.53006 * 109.47165 * 180.02562 * 11 10 2 13 13 C 1.52998 * 109.46909 * 59.99720 * 12 11 10 14 14 C 1.50701 * 109.47090 * 60.00503 * 13 12 11 15 15 H 1.08005 * 119.99731 * 239.99297 * 14 13 12 16 16 C 1.37875 * 120.00112 * 59.99768 * 14 13 12 17 17 N 1.31508 * 120.00077 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99963 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47024 * 59.99958 * 18 16 14 20 20 H 1.48501 * 109.47286 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46760 * 299.99865 * 18 16 14 22 22 C 1.52999 * 109.47436 * 300.00114 * 13 12 11 23 23 C 1.52996 * 109.46852 * 60.00265 * 22 13 12 24 24 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 25 25 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 27 27 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 28 28 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 29 29 H 1.07999 * 122.74265 * 359.96394 * 5 4 3 30 30 H 1.08996 * 109.47031 * 178.95365 * 10 2 1 31 31 H 1.09005 * 109.46983 * 300.00008 * 11 10 2 32 32 H 1.08995 * 109.47368 * 60.00024 * 11 10 2 33 33 H 1.08996 * 109.46907 * 299.99992 * 12 11 10 34 34 H 1.08995 * 109.46826 * 180.02562 * 12 11 10 35 35 H 1.09009 * 109.46726 * 180.02562 * 13 12 11 36 36 H 0.97000 * 120.00564 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.46983 * 300.00198 * 22 13 12 38 38 H 1.09003 * 109.47147 * 180.02562 * 22 13 12 39 39 H 1.09006 * 109.46861 * 180.02562 * 23 22 13 40 40 H 1.08996 * 109.47244 * 59.99993 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 6 2.3718 2.0454 2.4139 6 7 1.8403 2.7113 3.4203 7 6 0.6964 3.2741 3.2139 8 17 -0.1834 4.1979 4.3913 9 16 0.1782 2.9845 1.6105 10 6 1.9954 -0.7659 -1.1377 11 6 1.4836 -0.1555 -2.4440 12 6 2.0314 -0.9537 -3.6289 13 6 1.5617 -2.4061 -3.5261 14 6 0.0554 -2.4495 -3.5447 15 1 -0.4830 -2.8704 -2.7083 16 6 -0.6353 -1.9520 -4.6293 17 7 0.0203 -1.4391 -5.6474 18 14 -2.5024 -2.0051 -4.6519 19 1 -3.0336 -1.2300 -3.5020 20 1 -2.9992 -1.4123 -5.9196 21 1 -2.9587 -3.4148 -4.5518 22 6 2.0735 -3.0165 -2.2199 23 6 1.5257 -2.2184 -1.0351 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9274 -0.8309 28 1 3.0797 1.3444 -0.1083 29 1 3.3235 1.5398 2.4856 30 1 3.0848 -0.7342 -1.1241 31 1 0.3941 -0.1873 -2.4575 32 1 1.8178 0.8793 -2.5169 33 1 3.1208 -0.9223 -3.6155 34 1 1.6671 -0.5185 -4.5594 35 1 1.9523 -2.9748 -4.3701 36 1 -0.4656 -1.0894 -6.4107 37 1 3.1630 -2.9851 -2.2065 38 1 1.7392 -4.0515 -2.1469 39 1 1.8907 -2.6530 -0.1044 40 1 0.4363 -2.2498 -1.0484 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:12 Heat of formation + Delta-G solvation = 20.699926 kcal Electronic energy + Delta-G solvation = -22132.907162 eV Core-core repulsion = 18906.402126 eV Total energy + Delta-G solvation = -3226.505036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94181 -40.24424 -38.03055 -37.17444 -34.23500 -32.36324 -31.28026 -29.91698 -28.21331 -26.96796 -26.18966 -24.44831 -23.10185 -21.63940 -21.04542 -20.18079 -19.40593 -17.74724 -17.26064 -16.85659 -16.66270 -16.07747 -15.63447 -15.56679 -15.26486 -15.16780 -14.94313 -14.51889 -14.13763 -13.48415 -13.24757 -13.08647 -12.99596 -12.83858 -12.81402 -12.68521 -12.54686 -12.45293 -12.39163 -12.15750 -11.98892 -11.57671 -11.47076 -10.98009 -10.87191 -10.68210 -10.48922 -10.42638 -10.28547 -9.86409 -9.14378 -8.01106 -6.10698 -0.57341 -0.33001 0.51588 0.82013 1.40703 1.42677 1.48183 1.62851 2.46027 3.06017 3.27148 3.54800 3.77673 4.03787 4.07073 4.22719 4.38421 4.48122 4.55459 4.68983 4.74339 4.77682 4.83363 4.88907 4.92944 5.00165 5.05386 5.06219 5.15475 5.30293 5.46916 5.57655 5.66640 5.70345 5.75982 5.94754 6.14916 6.17546 6.27794 6.41083 6.49605 6.99784 7.55099 9.03017 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.003409 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.929238 B = 8211.530544 C = 8982.455912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.526 5.526 3 C 0.126 3.874 4 C -0.199 4.199 5 C 0.057 3.943 6 N -0.482 5.482 7 C 0.049 3.951 8 Cl 0.028 6.972 9 S 0.209 5.791 10 C 0.101 3.899 11 C -0.121 4.121 12 C -0.099 4.099 13 C 0.038 3.962 14 C -0.502 4.502 15 H 0.052 0.948 16 C 0.016 3.984 17 N -0.919 5.919 18 Si 0.933 3.067 19 H -0.270 1.270 20 H -0.291 1.291 21 H -0.276 1.276 22 C -0.101 4.101 23 C -0.091 4.091 24 H 0.023 0.977 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.203 0.797 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.029 0.971 34 H 0.053 0.947 35 H -0.014 1.014 36 H 0.256 0.744 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 10.030 15.775 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.004 4.004 4 C -0.321 4.321 5 C -0.094 4.094 6 N -0.200 5.200 7 C -0.253 4.253 8 Cl 0.056 6.944 9 S 0.459 5.541 10 C -0.006 4.006 11 C -0.160 4.160 12 C -0.138 4.138 13 C 0.019 3.981 14 C -0.541 4.541 15 H 0.070 0.930 16 C -0.181 4.181 17 N -0.559 5.559 18 Si 0.760 3.240 19 H -0.196 1.196 20 H -0.217 1.217 21 H -0.201 1.201 22 C -0.139 4.139 23 C -0.129 4.129 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.220 0.780 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.004 0.996 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.065 10.344 16.164 19.301 hybrid contribution -0.776 -0.014 -1.058 1.312 sum 1.288 10.330 15.106 18.345 Atomic orbital electron populations 1.22508 0.88132 1.02589 1.00020 1.62389 1.07839 1.12014 1.42607 1.20558 1.02247 0.87963 0.89641 1.26116 0.97911 1.05820 1.02276 1.21815 1.02695 0.99104 0.85780 1.66059 1.09263 1.10720 1.33934 1.27188 0.96676 1.04660 0.96733 1.98423 1.70876 1.69159 1.55954 1.84247 1.20647 1.45258 1.03961 1.21628 0.99100 0.93230 0.86677 1.21878 1.00790 0.97371 0.95949 1.21299 0.95986 0.98102 0.98429 1.18695 0.94434 0.92738 0.92218 1.21376 0.92545 1.37786 1.02347 0.92968 1.25557 1.01214 0.95712 0.95663 1.69998 1.36116 1.42106 1.07709 0.85992 0.82523 0.78311 0.77153 1.19566 1.21653 1.20099 1.21449 0.98636 0.98176 0.95622 1.21378 1.00640 0.93763 0.97079 0.95879 0.91274 0.91231 0.93155 0.86443 0.77995 0.89380 0.93307 0.93625 0.95254 0.92830 0.99634 0.93516 0.92870 0.93748 0.91587 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.51 127.69 1.09 1.54 16 2 N -0.53 -13.91 4.74 -901.59 -4.27 -18.18 16 3 C 0.13 2.76 4.94 85.56 0.42 3.18 16 4 C -0.20 -4.17 5.30 24.63 0.13 -4.04 16 5 C 0.06 1.19 11.25 83.63 0.94 2.13 16 6 N -0.48 -11.57 10.56 -194.43 -2.05 -13.62 16 7 C 0.05 1.09 8.03 130.64 1.05 2.13 16 8 Cl 0.03 0.54 29.33 -2.72 -0.08 0.46 16 9 S 0.21 4.20 21.88 -56.49 -1.24 2.96 16 10 C 0.10 3.10 2.23 44.92 0.10 3.20 16 11 C -0.12 -4.48 4.29 30.60 0.13 -4.35 16 12 C -0.10 -4.37 5.24 30.60 0.16 -4.21 16 13 C 0.04 1.77 2.59 -11.54 -0.03 1.74 16 14 C -0.50 -25.82 6.61 25.60 0.17 -25.65 16 15 H 0.05 2.65 6.71 -2.91 -0.02 2.63 16 16 C 0.02 0.87 5.30 84.66 0.45 1.32 16 17 N -0.92 -51.73 11.32 21.45 0.24 -51.48 16 18 Si 0.93 42.42 29.54 68.60 2.03 44.44 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.10 -3.82 5.41 30.59 0.17 -3.66 16 23 C -0.09 -3.05 4.78 30.59 0.15 -2.90 16 24 H 0.02 0.71 6.51 -2.39 -0.02 0.69 16 25 H 0.07 2.10 6.13 -2.38 -0.01 2.09 16 26 H 0.07 1.73 6.14 -2.39 -0.01 1.72 16 27 H 0.05 1.17 6.94 -2.39 -0.02 1.16 16 28 H 0.12 2.15 8.00 -2.39 -0.02 2.13 16 29 H 0.20 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.09 2.46 8.03 -2.39 -0.02 2.44 16 31 H 0.05 2.08 5.55 -2.38 -0.01 2.07 16 32 H 0.05 1.53 6.75 -2.39 -0.02 1.51 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 2.76 6.07 -2.39 -0.01 2.74 16 35 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 36 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.05 2.01 4.81 -2.39 -0.01 2.00 16 Total: -1.00 -57.51 331.87 0.60 -56.91 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.06 Total: 8.08 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 4.92 Total: -29.58 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -6.08 Total: -83.28 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.24 Total: 2.96 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -0.08 Total: 0.46 kcal Total: -57.51 0.60 -56.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.612 kcal (2) G-P(sol) polarization free energy of solvation -57.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds