Wall clock time and date at job start Tue Mar 31 2020 10:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46810 * 2 1 4 4 N 1.46502 * 109.46962 * 180.02562 * 3 2 1 5 5 C 1.46496 * 119.99879 * 269.99736 * 4 3 2 6 6 C 1.50699 * 109.47329 * 270.00339 * 5 4 3 7 7 H 1.07998 * 119.99827 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00131 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00056 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00086 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46788 * 90.00724 * 10 8 6 12 12 H 1.48498 * 109.47026 * 210.00649 * 10 8 6 13 13 H 1.48501 * 109.47229 * 330.00518 * 10 8 6 14 14 C 1.34780 * 120.00172 * 89.99758 * 4 3 2 15 15 O 1.21590 * 119.99671 * 179.97438 * 14 4 3 16 16 N 1.34773 * 119.99771 * 0.02562 * 14 4 3 17 17 C 1.40054 * 120.00061 * 184.59649 * 16 14 4 18 18 C 1.38869 * 120.03360 * 324.88270 * 17 16 14 19 19 C 1.38117 * 119.97577 * 180.02562 * 18 17 16 20 20 C 1.38455 * 120.05657 * 0.02562 * 19 18 17 21 21 F 1.35108 * 119.95851 * 180.27588 * 20 19 18 22 22 C 1.38559 * 120.08242 * 359.97438 * 20 19 18 23 23 Cl 1.73599 * 119.99146 * 179.97438 * 22 20 19 24 24 C 1.38239 * 120.02057 * 359.97438 * 22 20 19 25 25 H 1.08990 * 109.47082 * 60.00284 * 1 2 3 26 26 H 1.09001 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46930 * 299.99903 * 1 2 3 28 28 H 1.09000 * 109.46930 * 240.00097 * 2 1 3 29 29 H 1.09001 * 109.47427 * 119.99390 * 2 1 3 30 30 H 1.09000 * 109.47295 * 60.00321 * 3 2 1 31 31 H 1.09007 * 109.47051 * 300.00011 * 3 2 1 32 32 H 1.09003 * 109.47341 * 30.00266 * 5 4 3 33 33 H 1.08999 * 109.47355 * 149.99839 * 5 4 3 34 34 H 0.97001 * 119.99675 * 179.97438 * 9 8 6 35 35 H 0.97001 * 120.00548 * 4.58650 * 16 14 4 36 36 H 1.07997 * 120.01446 * 0.02562 * 18 17 16 37 37 H 1.08001 * 119.97242 * 180.02562 * 19 18 17 38 38 H 1.07993 * 120.03251 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.4425 1.2678 6 6 4.4892 2.8632 1.7029 7 1 4.1384 3.6842 1.0952 8 6 5.1679 3.1151 2.8764 9 7 5.3867 4.3550 3.2564 10 14 5.7754 1.6951 3.9272 11 1 7.1484 1.3188 3.5048 12 1 5.7917 2.1068 5.3539 13 1 4.8689 0.5310 3.7583 14 6 4.1784 1.4427 -1.1681 15 8 5.3943 1.4432 -1.1685 16 7 3.5041 1.4434 -2.3350 17 6 4.2004 1.3463 -3.5463 18 6 5.4447 1.9476 -3.6828 19 6 6.1301 1.8516 -4.8781 20 6 5.5774 1.1568 -5.9405 21 9 6.2521 1.0594 -7.1070 22 6 4.3361 0.5559 -5.8069 23 17 3.6451 -0.3142 -7.1407 24 6 3.6476 0.6490 -4.6117 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.6492 0.9285 2.0276 33 1 5.1903 0.9287 1.1371 34 1 5.8639 4.5321 4.0822 35 1 2.5364 1.5109 -2.3360 36 1 5.8763 2.4902 -2.8547 37 1 7.0979 2.3189 -4.9841 38 1 2.6799 0.1811 -4.5075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187691433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:16 Heat of formation + Delta-G solvation = -49.111567 kcal Electronic energy + Delta-G solvation = -23611.933684 eV Core-core repulsion = 19816.188218 eV Total energy + Delta-G solvation = -3795.745466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.95624 -40.55523 -38.71765 -36.78004 -35.96062 -34.52626 -33.15999 -32.15640 -31.06140 -29.44051 -27.86123 -25.81604 -23.49029 -23.26594 -21.93430 -21.64906 -19.60351 -18.34377 -17.68716 -17.24841 -16.97908 -16.40743 -15.78943 -15.46850 -14.93856 -14.76189 -14.43045 -14.16262 -13.97680 -13.78945 -13.55931 -13.40196 -12.99667 -12.91575 -12.49557 -12.11711 -12.10353 -11.85938 -11.59060 -11.48229 -11.38998 -11.13045 -10.96977 -10.70884 -10.55841 -10.24838 -10.08471 -9.66614 -9.47597 -9.05645 -8.64348 -8.19220 -7.78042 -6.14238 -4.13690 0.91159 0.95699 1.79931 2.89586 3.25034 3.26027 3.31237 3.33839 3.71285 4.02716 4.11951 4.34412 4.57552 4.94513 4.99951 5.01076 5.06077 5.17607 5.24695 5.32102 5.45032 5.48293 5.71391 5.72816 5.83522 5.98174 6.09198 6.13875 6.17595 6.30854 6.34594 6.46689 6.78507 6.86522 7.10731 7.32312 7.54144 8.27516 8.40347 8.87561 8.96318 9.45500 10.98983 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.003594 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.197722 B = 7789.304715 C = 9086.877473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.110 3.890 4 N -0.599 5.599 5 C 0.231 3.769 6 C -0.532 4.532 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.702 3.298 15 O -0.566 6.566 16 N -0.692 5.692 17 C 0.185 3.815 18 C -0.087 4.087 19 C -0.120 4.120 20 C 0.081 3.919 21 F -0.132 7.132 22 C -0.054 4.054 23 Cl -0.056 7.056 24 C -0.123 4.123 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 -8.508 -15.258 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.014 4.014 4 N -0.332 5.332 5 C 0.110 3.890 6 C -0.570 4.570 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.404 3.596 15 O -0.442 6.442 16 N -0.342 5.342 17 C 0.088 3.912 18 C -0.107 4.107 19 C -0.139 4.139 20 C 0.060 3.940 21 F -0.111 7.111 22 C -0.082 4.082 23 Cl -0.027 7.027 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.180 0.820 37 H 0.165 0.835 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.335 -8.478 -15.099 18.806 hybrid contribution -0.156 -0.662 0.355 0.767 sum -7.491 -9.140 -14.745 18.896 Atomic orbital electron populations 1.21703 0.95297 1.01661 1.01993 1.22032 0.95878 0.97798 1.02760 1.21532 0.80799 0.95991 1.03075 1.47244 1.05541 1.74859 1.05550 1.19635 0.92199 0.98436 0.78701 1.21323 1.37181 0.91239 1.07267 0.90720 1.24839 0.95185 0.95548 0.97309 1.69894 1.41292 1.18659 1.23563 0.86870 0.80200 0.82880 0.79840 1.19847 1.21050 1.19064 1.15848 0.85459 0.78272 0.80011 1.90896 1.11268 1.56621 1.85421 1.42934 1.10257 1.77698 1.03297 1.17382 0.93312 0.95405 0.85144 1.21535 0.94017 0.97659 0.97527 1.21080 1.01467 0.99959 0.91442 1.17349 0.90720 1.02564 0.83393 1.91512 1.79303 1.94674 1.45602 1.20539 0.94440 1.01994 0.91215 1.98373 1.84098 1.74866 1.45351 1.20566 1.01957 1.00799 0.91138 0.92780 0.92726 0.92295 0.92207 0.91195 0.89074 0.92052 0.94944 0.94343 0.92498 0.75670 0.81964 0.83500 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.15 -1.67 6.26 -26.73 -0.17 -1.84 16 3 C 0.11 1.53 5.21 -4.04 -0.02 1.51 16 4 N -0.60 -11.30 2.46 -180.80 -0.44 -11.74 16 5 C 0.23 5.31 4.23 -5.20 -0.02 5.29 16 6 C -0.53 -14.58 9.94 -34.44 -0.34 -14.92 16 7 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 10 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 14 C 0.70 13.32 8.12 -86.92 -0.71 12.61 16 15 O -0.57 -12.91 13.36 5.29 0.07 -12.84 16 16 N -0.69 -9.78 5.22 -14.21 -0.07 -9.85 16 17 C 0.19 2.53 6.30 -83.65 -0.53 2.00 16 18 C -0.09 -1.27 8.70 -39.39 -0.34 -1.61 16 19 C -0.12 -1.51 10.02 -39.55 -0.40 -1.91 16 20 C 0.08 1.02 7.27 -39.38 -0.29 0.74 16 21 F -0.13 -1.71 16.83 2.25 0.04 -1.67 16 22 C -0.05 -0.64 6.32 -39.46 -0.25 -0.89 16 23 Cl -0.06 -0.61 28.61 -51.86 -1.48 -2.09 16 24 C -0.12 -1.40 9.75 -39.37 -0.38 -1.78 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.06 0.69 6.30 -51.93 -0.33 0.37 16 32 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.41 4.45 6.52 -40.82 -0.27 4.18 16 36 H 0.16 2.77 6.22 -52.49 -0.33 2.44 16 37 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -31.70 340.43 -8.45 -40.15 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.61 Total: 2.59 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -3.17 Total: 0.23 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.26 Total: -47.69 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.07 Total: -12.84 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.70 -8.45 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187691433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.962 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds