Wall clock time and date at job start Tue Mar 31 2020 10:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 N 1.46496 * 109.47012 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99756 * 269.99852 * 4 3 2 6 6 C 1.50694 * 109.47448 * 270.00309 * 5 4 3 7 7 H 1.08004 * 120.00139 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00362 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00110 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00001 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.46871 * 90.00530 * 10 8 6 12 12 H 1.48506 * 109.47102 * 210.00351 * 10 8 6 13 13 H 1.48498 * 109.47070 * 330.00269 * 10 8 6 14 14 C 1.34776 * 120.00160 * 89.99729 * 4 3 2 15 15 O 1.21593 * 119.99784 * 179.97438 * 14 4 3 16 16 N 1.34773 * 119.99744 * 0.02562 * 14 4 3 17 17 C 1.40080 * 119.99474 * 185.62356 * 16 14 4 18 18 C 1.38816 * 120.07246 * 24.77048 * 17 16 14 19 19 C 1.38154 * 119.97512 * 179.74477 * 18 17 16 20 20 C 1.38262 * 120.12103 * 0.55467 * 19 18 17 21 21 C 1.38374 * 120.14127 * 359.69965 * 20 19 18 22 22 Cl 1.73605 * 119.98938 * 179.97438 * 21 20 19 23 23 C 1.38409 * 120.02373 * 0.02562 * 21 20 19 24 24 F 1.35100 * 120.06522 * 180.02562 * 23 21 20 25 25 H 1.09005 * 109.47294 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47586 * 299.99794 * 1 2 3 27 27 H 1.09003 * 109.47655 * 59.99754 * 1 2 3 28 28 H 1.08998 * 109.46832 * 239.99694 * 2 1 3 29 29 H 1.09000 * 109.46939 * 120.00118 * 2 1 3 30 30 H 1.09003 * 109.46755 * 60.00174 * 3 2 1 31 31 H 1.08995 * 109.46792 * 299.99816 * 3 2 1 32 32 H 1.09003 * 109.47160 * 30.00453 * 5 4 3 33 33 H 1.09004 * 109.47303 * 149.99736 * 5 4 3 34 34 H 0.96998 * 119.99667 * 179.97438 * 9 8 6 35 35 H 0.96991 * 120.00358 * 5.34588 * 16 14 4 36 36 H 1.07996 * 120.01304 * 0.03043 * 18 17 16 37 37 H 1.08001 * 119.93506 * 180.27848 * 19 18 17 38 38 H 1.08004 * 119.92749 * 179.72446 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2380 1.4422 1.2678 6 6 4.4893 2.8629 1.7030 7 1 4.1386 3.6840 1.0953 8 6 5.1680 3.1147 2.8765 9 7 5.3878 4.3546 3.2560 10 14 5.7753 1.6947 3.9273 11 1 7.1483 1.3182 3.5049 12 1 5.7918 2.1063 5.3541 13 1 4.8688 0.5307 3.7584 14 6 4.1784 1.4425 -1.1681 15 8 5.3943 1.4429 -1.1685 16 7 3.5040 1.4432 -2.3350 17 6 4.1989 1.3244 -3.5454 18 6 5.4436 0.7105 -3.5757 19 6 6.1248 0.5897 -4.7715 20 6 5.5743 1.0895 -5.9372 21 6 4.3363 1.7071 -5.9118 22 17 3.6490 2.3338 -7.3777 23 6 3.6461 1.8262 -4.7181 24 9 2.4370 2.4286 -4.6925 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.6492 0.9282 2.0276 33 1 5.1903 0.9283 1.1371 34 1 5.8649 4.5317 4.0817 35 1 2.5373 1.5218 -2.3364 36 1 5.8772 0.3233 -2.6655 37 1 7.0911 0.1080 -4.7950 38 1 6.1116 0.9973 -6.8695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188396203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:21 Heat of formation + Delta-G solvation = -46.955117 kcal Electronic energy + Delta-G solvation = -23944.518257 eV Core-core repulsion = 20148.866302 eV Total energy + Delta-G solvation = -3795.651955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.99379 -40.50955 -38.72784 -36.77128 -35.98793 -34.68043 -33.15482 -32.16502 -30.47118 -29.79900 -27.95502 -25.83246 -23.68178 -22.91204 -22.00884 -21.65882 -19.55589 -18.52642 -17.51630 -17.21234 -16.95234 -16.35019 -15.85300 -15.56864 -14.95415 -14.80276 -14.49235 -14.43923 -14.09135 -13.74689 -13.44977 -13.17167 -13.02408 -12.50191 -12.37537 -12.13583 -12.08945 -11.93537 -11.66064 -11.48454 -11.36480 -11.16967 -10.96471 -10.68561 -10.55515 -10.42118 -10.18036 -9.61445 -9.48039 -8.77880 -8.63157 -8.22195 -7.78347 -6.12555 -4.12189 0.91420 1.01532 1.82212 2.85598 3.25805 3.26871 3.31450 3.33664 3.71847 3.96639 4.10663 4.35176 4.70574 4.75991 4.97700 5.07908 5.14624 5.19687 5.24926 5.32623 5.48982 5.61611 5.74216 5.79163 5.85861 6.00935 6.08756 6.14411 6.20398 6.32950 6.36675 6.45177 6.76976 6.84736 7.09468 7.30634 7.54744 8.24793 8.41674 8.88496 8.94377 9.46615 11.00800 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.003798 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.737959 B = 7370.050922 C = 8235.043069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.597 5.597 5 C 0.231 3.769 6 C -0.532 4.532 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.703 3.297 15 O -0.563 6.563 16 N -0.686 5.686 17 C 0.170 3.830 18 C -0.104 4.104 19 C -0.092 4.092 20 C -0.116 4.116 21 C -0.050 4.050 22 Cl -0.056 7.056 23 C 0.061 3.939 24 F -0.129 7.129 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.408 0.592 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -10.187 -16.208 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.016 4.016 4 N -0.330 5.330 5 C 0.111 3.889 6 C -0.571 4.571 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.703 3.297 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.405 3.595 15 O -0.439 6.439 16 N -0.335 5.335 17 C 0.071 3.929 18 C -0.125 4.125 19 C -0.111 4.111 20 C -0.136 4.136 21 C -0.078 4.078 22 Cl -0.027 7.027 23 C 0.037 3.963 24 F -0.108 7.108 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.245 0.755 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.501 -9.984 -15.995 19.641 hybrid contribution -0.519 -0.172 0.504 0.743 sum -6.020 -10.155 -15.491 19.477 Atomic orbital electron populations 1.21705 0.95251 1.01677 1.02050 1.22019 0.95960 0.97682 1.02711 1.21553 0.80720 0.96109 1.03169 1.47270 1.05625 1.74566 1.05520 1.19649 0.92176 0.98485 0.78629 1.21330 1.37221 0.91250 1.07286 0.90745 1.24845 0.95179 0.95574 0.97300 1.69899 1.41251 1.18680 1.23543 0.86859 0.80158 0.82855 0.79843 1.19844 1.21040 1.19050 1.15801 0.85403 0.78342 0.79911 1.90859 1.11164 1.56563 1.85340 1.42890 1.10585 1.76641 1.03338 1.17472 0.94232 0.97456 0.83710 1.21650 0.93037 0.97454 1.00363 1.21107 1.00192 0.98867 0.90959 1.20886 0.93320 0.99471 0.99933 1.20633 0.96275 1.04377 0.86549 1.98373 1.84658 1.85789 1.33853 1.16980 0.84360 1.02260 0.92696 1.91494 1.41051 1.81149 1.97060 0.92689 0.92260 0.92748 0.92249 0.91128 0.88962 0.92070 0.94837 0.94294 0.92497 0.75469 0.81663 0.84125 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.14 -1.76 6.26 -26.73 -0.17 -1.93 16 3 C 0.11 1.62 5.22 -4.04 -0.02 1.60 16 4 N -0.60 -11.70 2.46 -180.81 -0.44 -12.15 16 5 C 0.23 5.39 4.23 -5.20 -0.02 5.37 16 6 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 7 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 10 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 14 C 0.70 13.95 8.08 -86.92 -0.70 13.25 16 15 O -0.56 -13.04 13.09 5.28 0.07 -12.97 16 16 N -0.69 -10.90 5.19 -14.17 -0.07 -10.98 16 17 C 0.17 2.57 6.44 -83.59 -0.54 2.04 16 18 C -0.10 -1.50 8.72 -39.40 -0.34 -1.84 16 19 C -0.09 -1.03 10.04 -39.60 -0.40 -1.42 16 20 C -0.12 -1.23 9.82 -39.52 -0.39 -1.61 16 21 C -0.05 -0.62 6.32 -39.47 -0.25 -0.87 16 22 Cl -0.06 -0.63 28.61 -51.86 -1.48 -2.11 16 23 C 0.06 0.85 7.28 -39.23 -0.29 0.56 16 24 F -0.13 -1.82 16.39 2.25 0.04 -1.79 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.44 8.07 -51.93 -0.42 1.03 16 31 H 0.06 0.79 6.29 -51.93 -0.33 0.47 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.41 5.51 6.16 -40.82 -0.25 5.26 16 36 H 0.17 2.68 5.79 -52.49 -0.30 2.38 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -32.19 339.12 -8.44 -40.63 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.58 Total: 3.62 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -3.19 Total: 0.82 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.26 Total: -49.62 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.19 -8.44 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188396203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.320 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds