Wall clock time and date at job start Tue Mar 31 2020 10:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 N 1.46496 * 109.47012 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99756 * 269.99852 * 4 3 2 6 6 C 1.50694 * 109.47448 * 270.00309 * 5 4 3 7 7 H 1.08004 * 120.00139 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00362 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00110 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00001 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.46871 * 90.00530 * 10 8 6 12 12 H 1.48506 * 109.47102 * 210.00351 * 10 8 6 13 13 H 1.48498 * 109.47070 * 330.00269 * 10 8 6 14 14 C 1.34776 * 120.00160 * 89.99729 * 4 3 2 15 15 O 1.21593 * 119.99784 * 179.97438 * 14 4 3 16 16 N 1.34773 * 119.99744 * 0.02562 * 14 4 3 17 17 C 1.40080 * 119.99474 * 185.62356 * 16 14 4 18 18 C 1.38816 * 120.07246 * 24.77048 * 17 16 14 19 19 C 1.38154 * 119.97512 * 179.74477 * 18 17 16 20 20 C 1.38262 * 120.12103 * 0.55467 * 19 18 17 21 21 C 1.38374 * 120.14127 * 359.69965 * 20 19 18 22 22 Cl 1.73605 * 119.98938 * 179.97438 * 21 20 19 23 23 C 1.38409 * 120.02373 * 0.02562 * 21 20 19 24 24 F 1.35100 * 120.06522 * 180.02562 * 23 21 20 25 25 H 1.09005 * 109.47294 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47586 * 299.99794 * 1 2 3 27 27 H 1.09003 * 109.47655 * 59.99754 * 1 2 3 28 28 H 1.08998 * 109.46832 * 239.99694 * 2 1 3 29 29 H 1.09000 * 109.46939 * 120.00118 * 2 1 3 30 30 H 1.09003 * 109.46755 * 60.00174 * 3 2 1 31 31 H 1.08995 * 109.46792 * 299.99816 * 3 2 1 32 32 H 1.09003 * 109.47160 * 30.00453 * 5 4 3 33 33 H 1.09004 * 109.47303 * 149.99736 * 5 4 3 34 34 H 0.96998 * 119.99667 * 179.97438 * 9 8 6 35 35 H 0.96991 * 120.00358 * 5.34588 * 16 14 4 36 36 H 1.07996 * 120.01304 * 0.03043 * 18 17 16 37 37 H 1.08001 * 119.93506 * 180.27848 * 19 18 17 38 38 H 1.08004 * 119.92749 * 179.72446 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2380 1.4422 1.2678 6 6 4.4893 2.8629 1.7030 7 1 4.1386 3.6840 1.0953 8 6 5.1680 3.1147 2.8765 9 7 5.3878 4.3546 3.2560 10 14 5.7753 1.6947 3.9273 11 1 7.1483 1.3182 3.5049 12 1 5.7918 2.1063 5.3541 13 1 4.8688 0.5307 3.7584 14 6 4.1784 1.4425 -1.1681 15 8 5.3943 1.4429 -1.1685 16 7 3.5040 1.4432 -2.3350 17 6 4.1989 1.3244 -3.5454 18 6 5.4436 0.7105 -3.5757 19 6 6.1248 0.5897 -4.7715 20 6 5.5743 1.0895 -5.9372 21 6 4.3363 1.7071 -5.9118 22 17 3.6490 2.3338 -7.3777 23 6 3.6461 1.8262 -4.7181 24 9 2.4370 2.4286 -4.6925 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.6492 0.9282 2.0276 33 1 5.1903 0.9283 1.1371 34 1 5.8649 4.5317 4.0817 35 1 2.5373 1.5218 -2.3364 36 1 5.8772 0.3233 -2.6655 37 1 7.0911 0.1080 -4.7950 38 1 6.1116 0.9973 -6.8695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188396203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:19 Heat of formation + Delta-G solvation = -65.942676 kcal Electronic energy + Delta-G solvation = -23945.341620 eV Core-core repulsion = 20148.866302 eV Total energy + Delta-G solvation = -3796.475318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -50.08174 -41.88215 -39.86991 -37.80420 -37.33076 -36.02908 -34.91003 -33.71047 -31.47842 -31.13740 -29.58994 -27.05050 -25.16973 -24.09505 -23.40484 -22.72040 -20.95987 -19.80232 -19.10135 -18.71258 -18.39689 -17.48310 -17.00382 -16.90964 -16.48543 -16.06349 -15.75600 -15.58984 -15.53014 -15.20047 -14.54292 -14.48897 -14.23870 -14.06577 -13.73688 -13.34719 -13.19231 -13.13817 -12.96300 -12.78744 -12.60934 -12.36791 -12.26870 -12.08333 -11.97939 -11.74610 -11.64823 -11.57769 -11.03320 -10.81885 -9.78851 -9.64986 -9.13041 -8.32901 -6.38828 -0.09974 -0.01209 0.84537 1.34442 1.39168 1.46522 1.53190 1.97133 2.32249 2.50653 2.75754 2.94010 3.02197 3.72612 3.80787 3.88587 4.05440 4.14202 4.26289 4.34006 4.52124 4.62377 4.68199 4.73300 4.83579 4.87108 4.97458 5.05578 5.16198 5.20250 5.22162 5.32575 5.40644 5.45146 5.52764 5.73966 5.80706 6.24599 6.62701 6.80774 7.21911 7.42206 8.84281 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.003798 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.737959 B = 7370.050922 C = 8235.043069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.103 3.897 4 N -0.605 5.605 5 C 0.243 3.757 6 C -0.539 4.539 7 H 0.025 0.975 8 C 0.012 3.988 9 N -0.947 5.947 10 Si 0.949 3.051 11 H -0.274 1.274 12 H -0.277 1.277 13 H -0.234 1.234 14 C 0.700 3.300 15 O -0.604 6.604 16 N -0.674 5.674 17 C 0.143 3.857 18 C -0.121 4.121 19 C -0.080 4.080 20 C -0.099 4.099 21 C -0.056 4.056 22 Cl -0.044 7.044 23 C 0.052 3.948 24 F -0.133 7.133 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.268 0.732 35 H 0.417 0.583 36 H 0.143 0.857 37 H 0.173 0.827 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -12.410 -17.631 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C -0.019 4.019 4 N -0.337 5.337 5 C 0.120 3.880 6 C -0.577 4.577 7 H 0.043 0.957 8 C -0.186 4.186 9 N -0.587 5.587 10 Si 0.771 3.229 11 H -0.199 1.199 12 H -0.203 1.203 13 H -0.157 1.157 14 C 0.402 3.598 15 O -0.484 6.484 16 N -0.323 5.323 17 C 0.045 3.955 18 C -0.142 4.142 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.084 4.084 22 Cl -0.015 7.015 23 C 0.029 3.971 24 F -0.112 7.112 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.257 0.743 36 H 0.161 0.839 37 H 0.191 0.809 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.914 -12.220 -17.477 22.130 hybrid contribution -0.412 0.615 0.761 1.062 sum -6.326 -11.606 -16.716 21.310 Atomic orbital electron populations 1.21682 0.92994 1.02848 1.02662 1.21919 0.97724 0.95174 1.02517 1.21829 0.78030 0.98468 1.03608 1.47230 1.07369 1.74664 1.04464 1.19303 0.92611 0.95285 0.80775 1.21565 1.36927 0.92426 1.06805 0.95700 1.25856 0.95211 0.98657 0.98890 1.70063 1.42642 1.21465 1.24484 0.85702 0.79744 0.79811 0.77608 1.19943 1.20273 1.15742 1.15942 0.85055 0.78011 0.80785 1.90825 1.12998 1.58383 1.86161 1.42577 1.10914 1.76214 1.02637 1.17669 0.95024 0.99242 0.83541 1.21614 0.93259 0.98322 1.00963 1.21443 1.00893 0.97787 0.89745 1.21303 0.92332 0.97127 1.01038 1.20844 0.96772 1.04326 0.86428 1.98380 1.84643 1.85647 1.32845 1.17069 0.84451 1.02602 0.92975 1.91476 1.41336 1.81295 1.97112 0.91219 0.92226 0.91629 0.91868 0.91914 0.89939 0.90282 0.92662 0.95484 0.92277 0.74327 0.83913 0.80924 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.13 -3.09 6.26 30.59 0.19 -2.89 16 3 C 0.10 3.06 5.22 86.38 0.45 3.51 16 4 N -0.60 -24.15 2.46 -844.21 -2.07 -26.22 16 5 C 0.24 11.43 4.23 85.63 0.36 11.80 16 6 C -0.54 -31.32 9.94 25.60 0.25 -31.07 16 7 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 8 C 0.01 0.69 5.47 84.65 0.46 1.15 16 9 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 10 Si 0.95 43.37 27.47 68.60 1.88 45.25 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.23 -9.45 6.54 99.48 0.65 -8.80 16 14 C 0.70 28.57 8.08 179.06 1.45 30.02 16 15 O -0.60 -29.11 13.09 -4.01 -0.05 -29.16 16 16 N -0.67 -21.73 5.19 -316.99 -1.64 -23.37 16 17 C 0.14 4.32 6.44 38.15 0.25 4.56 16 18 C -0.12 -3.45 8.72 22.39 0.20 -3.25 16 19 C -0.08 -1.59 10.04 22.26 0.22 -1.37 16 20 C -0.10 -1.77 9.82 22.31 0.22 -1.55 16 21 C -0.06 -1.25 6.32 22.34 0.14 -1.11 16 22 Cl -0.04 -0.90 28.61 -2.72 -0.08 -0.97 16 23 C 0.05 1.42 7.28 22.50 0.16 1.58 16 24 F -0.13 -3.69 16.39 44.97 0.74 -2.95 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 31 H 0.08 2.02 6.29 -2.39 -0.02 2.01 16 32 H 0.06 2.37 7.13 -2.39 -0.02 2.35 16 33 H 0.03 1.35 6.85 -2.38 -0.02 1.33 16 34 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 35 H 0.42 11.26 6.16 -92.71 -0.57 10.69 16 36 H 0.14 4.79 5.79 -2.91 -0.02 4.78 16 37 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -73.61 339.12 4.62 -69.00 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.47 Total: 18.14 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.07 Total: 9.63 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.42 Total: -108.93 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.05 Total: -29.16 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.74 Total: -2.95 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.97 kcal Total: -73.61 4.62 -69.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188396203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.054 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds