Wall clock time and date at job start Tue Mar 31 2020 10:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37140 * 126.49158 * 2 1 4 4 C 1.47275 * 125.16760 * 359.97438 * 3 2 1 5 5 C 1.39419 * 120.36290 * 47.29455 * 4 3 2 6 6 C 1.37988 * 119.96579 * 179.71840 * 5 4 3 7 7 C 1.38983 * 120.70136 * 0.55929 * 6 5 4 8 8 C 1.36411 * 120.73657 * 359.72293 * 7 6 5 9 9 C 1.40769 * 120.00684 * 359.97438 * 8 7 6 10 10 C 1.40746 * 120.34678 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00091 * 149.23742 * 10 9 8 12 12 C 1.40138 * 119.99801 * 329.23336 * 10 9 8 13 13 N 1.30723 * 119.99853 * 166.35057 * 12 10 9 14 14 Si 1.86803 * 120.00141 * 346.34843 * 12 10 9 15 15 H 1.48503 * 109.46886 * 92.94387 * 14 12 10 16 16 H 1.48499 * 109.46923 * 212.94214 * 14 12 10 17 17 H 1.48497 * 109.46943 * 332.94391 * 14 12 10 18 18 N 1.31322 * 109.65970 * 179.97438 * 3 2 1 19 19 C 1.34752 * 109.78250 * 359.76063 * 18 3 2 20 20 C 1.40110 * 133.26915 * 179.57270 * 19 18 3 21 21 C 1.36493 * 119.95328 * 180.38695 * 20 19 18 22 22 C 1.39037 * 120.69849 * 0.24819 * 21 20 19 23 23 F 1.35107 * 119.79935 * 179.97438 * 22 21 20 24 24 C 1.38286 * 120.40562 * 0.02562 * 22 21 20 25 25 F 1.35104 * 120.16229 * 179.97438 * 24 22 21 26 26 C 1.38162 * 126.48528 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47153 * 265.17865 * 1 2 3 28 28 H 1.09002 * 109.47283 * 25.17510 * 1 2 3 29 29 H 1.09000 * 109.47394 * 145.17741 * 1 2 3 30 30 H 1.08004 * 120.01681 * 0.02562 * 5 4 3 31 31 H 1.08000 * 119.65352 * 180.25971 * 6 5 4 32 32 H 1.08001 * 119.63200 * 179.73584 * 7 6 5 33 33 H 1.08004 * 119.99608 * 180.02562 * 8 7 6 34 34 H 0.97004 * 120.00295 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.02274 * 0.66017 * 20 19 18 36 36 H 1.07998 * 119.65502 * 180.27344 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2806 1.1025 0.0000 4 6 1.8172 2.5005 -0.0005 5 6 0.8206 2.9129 0.8830 6 6 0.3967 4.2260 0.8795 7 6 0.9448 5.1463 -0.0062 8 6 1.9172 4.7725 -0.8868 9 6 2.3769 3.4421 -0.9051 10 6 3.3795 3.0485 -1.8110 11 1 4.0684 2.2603 -1.5452 12 6 3.4840 3.6794 -3.0580 13 7 4.5564 3.5133 -3.7868 14 14 2.0907 4.7578 -3.6789 15 1 2.3464 6.1685 -3.2918 16 1 2.0086 4.6574 -5.1582 17 1 0.8096 4.3046 -3.0801 18 7 3.5375 0.7223 0.0006 19 6 3.6069 -0.6234 0.0062 20 6 4.6751 -1.5300 0.0016 21 6 4.4295 -2.8727 0.0019 22 6 3.1258 -3.3558 0.0016 23 9 2.9035 -4.6884 0.0013 24 6 2.0551 -2.4806 0.0004 25 9 0.7902 -2.9554 -0.0004 26 6 2.2865 -1.1108 0.0005 27 1 -0.3633 -0.0864 1.0240 28 1 -0.3634 0.9301 -0.4372 29 1 -0.3634 -0.8436 -0.5868 30 1 0.3842 2.2061 1.5733 31 1 -0.3726 4.5410 1.5689 32 1 0.5971 6.1687 0.0030 33 1 2.3351 5.4976 -1.5695 34 1 4.6286 3.9497 -4.6501 35 1 5.6922 -1.1667 0.0022 36 1 5.2566 -3.5672 0.0028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251427122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:29 Heat of formation + Delta-G solvation = 6.262730 kcal Electronic energy + Delta-G solvation = -25367.712185 eV Core-core repulsion = 21453.340473 eV Total energy + Delta-G solvation = -3914.371712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -49.27094 -48.34257 -41.69278 -38.08245 -36.68880 -34.01128 -33.59759 -31.16802 -30.68720 -29.91444 -28.07634 -26.68982 -25.50232 -23.21173 -22.46877 -21.46687 -21.15700 -19.51520 -17.80262 -17.63022 -17.33330 -17.21204 -16.35402 -15.98931 -15.47367 -15.24886 -15.02577 -14.70450 -14.58565 -14.18036 -14.15046 -13.86997 -13.29699 -12.94665 -12.86671 -12.71151 -12.55434 -12.22446 -12.18504 -11.80135 -11.46471 -11.09254 -11.02541 -10.84327 -10.54777 -10.14034 -9.93660 -9.88651 -9.42529 -9.36307 -8.40402 -7.96188 -7.89211 -7.41723 -7.14338 -4.70530 0.84593 1.45185 2.07554 2.46104 2.79262 2.95055 3.03351 3.14092 3.22044 3.77281 3.95976 4.01185 4.28588 4.44868 4.60114 4.88047 4.93042 4.99458 5.19972 5.31901 5.46333 5.54075 5.62335 5.71734 5.86313 5.94296 5.96090 6.20964 6.26584 6.36015 6.51416 6.65085 6.67373 6.91558 6.96680 7.04150 7.27236 7.39264 7.56304 7.65371 7.84723 8.24947 8.36121 8.46483 8.63088 9.82943 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.004759 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.690466 B = 5881.592924 C = 6755.213001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.487 5.487 3 C 0.404 3.596 4 C -0.180 4.180 5 C -0.040 4.040 6 C -0.252 4.252 7 C -0.060 4.060 8 C -0.226 4.226 9 C 0.122 3.878 10 C -0.414 4.414 11 H 0.122 0.878 12 C 0.079 3.921 13 N -0.782 5.782 14 Si 0.911 3.089 15 H -0.266 1.266 16 H -0.289 1.289 17 H -0.242 1.242 18 N -0.481 5.481 19 C 0.085 3.915 20 C -0.049 4.049 21 C -0.139 4.139 22 C 0.057 3.943 23 F -0.134 7.134 24 C 0.078 3.922 25 F -0.136 7.136 26 C 0.014 3.986 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.290 0.710 35 H 0.144 0.856 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -6.133 4.370 8.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.175 5.175 3 C 0.146 3.854 4 C -0.184 4.184 5 C -0.059 4.059 6 C -0.271 4.271 7 C -0.079 4.079 8 C -0.245 4.245 9 C 0.117 3.883 10 C -0.441 4.441 11 H 0.140 0.860 12 C -0.143 4.143 13 N -0.404 5.404 14 Si 0.738 3.262 15 H -0.192 1.192 16 H -0.216 1.216 17 H -0.165 1.165 18 N -0.198 5.198 19 C -0.039 4.039 20 C -0.069 4.069 21 C -0.160 4.160 22 C 0.036 3.964 23 F -0.113 7.113 24 C 0.054 3.946 25 F -0.115 7.115 26 C -0.098 4.098 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.162 0.838 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.109 -5.695 4.123 8.143 hybrid contribution -1.536 -0.388 -0.429 1.642 sum -5.646 -6.082 3.694 9.084 Atomic orbital electron populations 1.22039 0.76193 1.05019 1.03061 1.45577 1.07127 1.04365 1.60479 1.21840 0.83590 0.87949 0.92034 1.17309 1.05646 0.86485 1.08985 1.20617 0.94320 0.95602 0.95409 1.20203 1.07273 0.93781 1.05887 1.20480 0.94961 0.97743 0.94741 1.20804 1.03693 0.95932 1.04076 1.17452 0.89992 0.89820 0.91018 1.20082 1.10261 1.16366 0.97392 0.86048 1.26416 0.96348 0.94643 0.96912 1.69620 1.25507 1.34010 1.11227 0.86332 0.83066 0.80048 0.76792 1.19186 1.21610 1.16511 1.70793 1.17247 1.08126 1.23655 1.19099 0.90426 0.91449 1.02877 1.19952 0.98381 0.90171 0.98387 1.20364 0.94212 0.96022 1.05438 1.17051 0.92663 0.76743 1.09971 1.91476 1.95531 1.29782 1.94478 1.16275 0.78791 0.88258 1.11233 1.91448 1.36832 1.88731 1.94511 1.18507 0.93370 0.87151 1.10727 0.91060 0.88398 0.90175 0.88668 0.88269 0.88422 0.87629 0.89905 0.83791 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.85 59.85 0.59 1.73 16 2 N -0.49 -9.14 3.24 -119.04 -0.39 -9.52 16 3 C 0.40 8.72 6.72 -154.38 -1.04 7.68 16 4 C -0.18 -3.94 5.48 -104.32 -0.57 -4.52 16 5 C -0.04 -0.75 8.54 -39.23 -0.34 -1.09 16 6 C -0.25 -4.63 10.03 -39.40 -0.40 -5.02 16 7 C -0.06 -1.17 9.96 -39.96 -0.40 -1.57 16 8 C -0.23 -4.97 6.98 -39.28 -0.27 -5.25 16 9 C 0.12 2.91 5.15 -106.53 -0.55 2.36 16 10 C -0.41 -10.68 8.94 -37.92 -0.34 -11.02 16 11 H 0.12 3.41 6.19 -52.48 -0.32 3.08 16 12 C 0.08 1.96 5.46 -17.31 -0.09 1.86 16 13 N -0.78 -19.75 13.92 55.56 0.77 -18.98 16 14 Si 0.91 19.26 24.42 -169.99 -4.15 15.10 16 15 H -0.27 -5.37 6.66 56.52 0.38 -5.00 16 16 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.24 -5.17 6.73 56.52 0.38 -4.79 16 18 N -0.48 -10.85 9.42 -8.86 -0.08 -10.93 16 19 C 0.08 1.67 7.20 -84.94 -0.61 1.05 16 20 C -0.05 -0.78 10.05 -39.51 -0.40 -1.17 16 21 C -0.14 -1.90 9.94 -39.91 -0.40 -2.30 16 22 C 0.06 0.89 7.30 -39.27 -0.29 0.60 16 23 F -0.13 -2.01 17.17 2.25 0.04 -1.98 16 24 C 0.08 1.32 7.32 -39.31 -0.29 1.03 16 25 F -0.14 -2.24 16.16 2.25 0.04 -2.21 16 26 C 0.01 0.26 6.88 -83.81 -0.58 -0.31 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.39 7.11 -51.93 -0.37 1.02 16 29 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16 30 H 0.10 1.57 7.58 -52.48 -0.40 1.17 16 31 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 2.30 4.46 -52.48 -0.23 2.06 16 34 H 0.29 6.58 8.29 -40.82 -0.34 6.24 16 35 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -27.38 312.04 -8.04 -35.42 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.01 Total: 4.32 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -5.96 Total: -15.92 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.30 Total: -39.44 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.15 Total: 15.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.38 -8.04 -35.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251427122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.681 kcal (2) G-P(sol) polarization free energy of solvation -27.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds