Wall clock time and date at job start Tue Mar 31 2020 10:38:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.37140 * 126.49158 * 2 1
4 4 C 1.47275 * 125.16760 * 359.97438 * 3 2 1
5 5 C 1.39419 * 120.36290 * 47.29455 * 4 3 2
6 6 C 1.37988 * 119.96579 * 179.71840 * 5 4 3
7 7 C 1.38983 * 120.70136 * 0.55929 * 6 5 4
8 8 C 1.36411 * 120.73657 * 359.72293 * 7 6 5
9 9 C 1.40769 * 120.00684 * 359.97438 * 8 7 6
10 10 C 1.40746 * 120.34678 * 179.97438 * 9 8 7
11 11 H 1.08004 * 120.00091 * 149.23742 * 10 9 8
12 12 C 1.40138 * 119.99801 * 329.23336 * 10 9 8
13 13 N 1.30723 * 119.99853 * 166.35057 * 12 10 9
14 14 Si 1.86803 * 120.00141 * 346.34843 * 12 10 9
15 15 H 1.48503 * 109.46886 * 92.94387 * 14 12 10
16 16 H 1.48499 * 109.46923 * 212.94214 * 14 12 10
17 17 H 1.48497 * 109.46943 * 332.94391 * 14 12 10
18 18 N 1.31322 * 109.65970 * 179.97438 * 3 2 1
19 19 C 1.34752 * 109.78250 * 359.76063 * 18 3 2
20 20 C 1.40110 * 133.26915 * 179.57270 * 19 18 3
21 21 C 1.36493 * 119.95328 * 180.38695 * 20 19 18
22 22 C 1.39037 * 120.69849 * 0.24819 * 21 20 19
23 23 F 1.35107 * 119.79935 * 179.97438 * 22 21 20
24 24 C 1.38286 * 120.40562 * 0.02562 * 22 21 20
25 25 F 1.35104 * 120.16229 * 179.97438 * 24 22 21
26 26 C 1.38162 * 126.48528 * 179.97438 * 2 1 3
27 27 H 1.09001 * 109.47153 * 265.17865 * 1 2 3
28 28 H 1.09002 * 109.47283 * 25.17510 * 1 2 3
29 29 H 1.09000 * 109.47394 * 145.17741 * 1 2 3
30 30 H 1.08004 * 120.01681 * 0.02562 * 5 4 3
31 31 H 1.08000 * 119.65352 * 180.25971 * 6 5 4
32 32 H 1.08001 * 119.63200 * 179.73584 * 7 6 5
33 33 H 1.08004 * 119.99608 * 180.02562 * 8 7 6
34 34 H 0.97004 * 120.00295 * 179.97438 * 13 12 10
35 35 H 1.07997 * 120.02274 * 0.66017 * 20 19 18
36 36 H 1.07998 * 119.65502 * 180.27344 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2806 1.1025 0.0000
4 6 1.8172 2.5005 -0.0005
5 6 0.8206 2.9129 0.8830
6 6 0.3967 4.2260 0.8795
7 6 0.9448 5.1463 -0.0062
8 6 1.9172 4.7725 -0.8868
9 6 2.3769 3.4421 -0.9051
10 6 3.3795 3.0485 -1.8110
11 1 4.0684 2.2603 -1.5452
12 6 3.4840 3.6794 -3.0580
13 7 4.5564 3.5133 -3.7868
14 14 2.0907 4.7578 -3.6789
15 1 2.3464 6.1685 -3.2918
16 1 2.0086 4.6574 -5.1582
17 1 0.8096 4.3046 -3.0801
18 7 3.5375 0.7223 0.0006
19 6 3.6069 -0.6234 0.0062
20 6 4.6751 -1.5300 0.0016
21 6 4.4295 -2.8727 0.0019
22 6 3.1258 -3.3558 0.0016
23 9 2.9035 -4.6884 0.0013
24 6 2.0551 -2.4806 0.0004
25 9 0.7902 -2.9554 -0.0004
26 6 2.2865 -1.1108 0.0005
27 1 -0.3633 -0.0864 1.0240
28 1 -0.3634 0.9301 -0.4372
29 1 -0.3634 -0.8436 -0.5868
30 1 0.3842 2.2061 1.5733
31 1 -0.3726 4.5410 1.5689
32 1 0.5971 6.1687 0.0030
33 1 2.3351 5.4976 -1.5695
34 1 4.6286 3.9497 -4.6501
35 1 5.6922 -1.1667 0.0022
36 1 5.2566 -3.5672 0.0028
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001251427122.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:38:29
Heat of formation + Delta-G solvation = 6.262730 kcal
Electronic energy + Delta-G solvation = -25367.712185 eV
Core-core repulsion = 21453.340473 eV
Total energy + Delta-G solvation = -3914.371712 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 314.093 amu
Computer time = 3.43 seconds
Orbital eigenvalues (eV)
-49.27094 -48.34257 -41.69278 -38.08245 -36.68880 -34.01128 -33.59759 -31.16802
-30.68720 -29.91444 -28.07634 -26.68982 -25.50232 -23.21173 -22.46877 -21.46687
-21.15700 -19.51520 -17.80262 -17.63022 -17.33330 -17.21204 -16.35402 -15.98931
-15.47367 -15.24886 -15.02577 -14.70450 -14.58565 -14.18036 -14.15046 -13.86997
-13.29699 -12.94665 -12.86671 -12.71151 -12.55434 -12.22446 -12.18504 -11.80135
-11.46471 -11.09254 -11.02541 -10.84327 -10.54777 -10.14034 -9.93660 -9.88651
-9.42529 -9.36307 -8.40402 -7.96188 -7.89211 -7.41723 -7.14338 -4.70530
0.84593 1.45185 2.07554 2.46104 2.79262 2.95055 3.03351 3.14092
3.22044 3.77281 3.95976 4.01185 4.28588 4.44868 4.60114 4.88047
4.93042 4.99458 5.19972 5.31901 5.46333 5.54075 5.62335 5.71734
5.86313 5.94296 5.96090 6.20964 6.26584 6.36015 6.51416 6.65085
6.67373 6.91558 6.96680 7.04150 7.27236 7.39264 7.56304 7.65371
7.84723 8.24947 8.36121 8.46483 8.63088 9.82943
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.016577 B = 0.004759 C = 0.004144
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1688.690466 B = 5881.592924 C = 6755.213001
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.487 5.487
3 C 0.404 3.596
4 C -0.180 4.180
5 C -0.040 4.040
6 C -0.252 4.252
7 C -0.060 4.060
8 C -0.226 4.226
9 C 0.122 3.878
10 C -0.414 4.414
11 H 0.122 0.878
12 C 0.079 3.921
13 N -0.782 5.782
14 Si 0.911 3.089
15 H -0.266 1.266
16 H -0.289 1.289
17 H -0.242 1.242
18 N -0.481 5.481
19 C 0.085 3.915
20 C -0.049 4.049
21 C -0.139 4.139
22 C 0.057 3.943
23 F -0.134 7.134
24 C 0.078 3.922
25 F -0.136 7.136
26 C 0.014 3.986
27 H 0.071 0.929
28 H 0.097 0.903
29 H 0.080 0.920
30 H 0.095 0.905
31 H 0.099 0.901
32 H 0.098 0.902
33 H 0.106 0.894
34 H 0.290 0.710
35 H 0.144 0.856
36 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.809 -6.133 4.370 8.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.175 5.175
3 C 0.146 3.854
4 C -0.184 4.184
5 C -0.059 4.059
6 C -0.271 4.271
7 C -0.079 4.079
8 C -0.245 4.245
9 C 0.117 3.883
10 C -0.441 4.441
11 H 0.140 0.860
12 C -0.143 4.143
13 N -0.404 5.404
14 Si 0.738 3.262
15 H -0.192 1.192
16 H -0.216 1.216
17 H -0.165 1.165
18 N -0.198 5.198
19 C -0.039 4.039
20 C -0.069 4.069
21 C -0.160 4.160
22 C 0.036 3.964
23 F -0.113 7.113
24 C 0.054 3.946
25 F -0.115 7.115
26 C -0.098 4.098
27 H 0.089 0.911
28 H 0.116 0.884
29 H 0.098 0.902
30 H 0.113 0.887
31 H 0.117 0.883
32 H 0.116 0.884
33 H 0.124 0.876
34 H 0.101 0.899
35 H 0.162 0.838
36 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -4.109 -5.695 4.123 8.143
hybrid contribution -1.536 -0.388 -0.429 1.642
sum -5.646 -6.082 3.694 9.084
Atomic orbital electron populations
1.22039 0.76193 1.05019 1.03061 1.45577 1.07127 1.04365 1.60479
1.21840 0.83590 0.87949 0.92034 1.17309 1.05646 0.86485 1.08985
1.20617 0.94320 0.95602 0.95409 1.20203 1.07273 0.93781 1.05887
1.20480 0.94961 0.97743 0.94741 1.20804 1.03693 0.95932 1.04076
1.17452 0.89992 0.89820 0.91018 1.20082 1.10261 1.16366 0.97392
0.86048 1.26416 0.96348 0.94643 0.96912 1.69620 1.25507 1.34010
1.11227 0.86332 0.83066 0.80048 0.76792 1.19186 1.21610 1.16511
1.70793 1.17247 1.08126 1.23655 1.19099 0.90426 0.91449 1.02877
1.19952 0.98381 0.90171 0.98387 1.20364 0.94212 0.96022 1.05438
1.17051 0.92663 0.76743 1.09971 1.91476 1.95531 1.29782 1.94478
1.16275 0.78791 0.88258 1.11233 1.91448 1.36832 1.88731 1.94511
1.18507 0.93370 0.87151 1.10727 0.91060 0.88398 0.90175 0.88668
0.88269 0.88422 0.87629 0.89905 0.83791 0.83676
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.14 9.85 59.85 0.59 1.73 16
2 N -0.49 -9.14 3.24 -119.04 -0.39 -9.52 16
3 C 0.40 8.72 6.72 -154.38 -1.04 7.68 16
4 C -0.18 -3.94 5.48 -104.32 -0.57 -4.52 16
5 C -0.04 -0.75 8.54 -39.23 -0.34 -1.09 16
6 C -0.25 -4.63 10.03 -39.40 -0.40 -5.02 16
7 C -0.06 -1.17 9.96 -39.96 -0.40 -1.57 16
8 C -0.23 -4.97 6.98 -39.28 -0.27 -5.25 16
9 C 0.12 2.91 5.15 -106.53 -0.55 2.36 16
10 C -0.41 -10.68 8.94 -37.92 -0.34 -11.02 16
11 H 0.12 3.41 6.19 -52.48 -0.32 3.08 16
12 C 0.08 1.96 5.46 -17.31 -0.09 1.86 16
13 N -0.78 -19.75 13.92 55.56 0.77 -18.98 16
14 Si 0.91 19.26 24.42 -169.99 -4.15 15.10 16
15 H -0.27 -5.37 6.66 56.52 0.38 -5.00 16
16 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16
17 H -0.24 -5.17 6.73 56.52 0.38 -4.79 16
18 N -0.48 -10.85 9.42 -8.86 -0.08 -10.93 16
19 C 0.08 1.67 7.20 -84.94 -0.61 1.05 16
20 C -0.05 -0.78 10.05 -39.51 -0.40 -1.17 16
21 C -0.14 -1.90 9.94 -39.91 -0.40 -2.30 16
22 C 0.06 0.89 7.30 -39.27 -0.29 0.60 16
23 F -0.13 -2.01 17.17 2.25 0.04 -1.98 16
24 C 0.08 1.32 7.32 -39.31 -0.29 1.03 16
25 F -0.14 -2.24 16.16 2.25 0.04 -2.21 16
26 C 0.01 0.26 6.88 -83.81 -0.58 -0.31 16
27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16
28 H 0.10 1.39 7.11 -51.93 -0.37 1.02 16
29 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16
30 H 0.10 1.57 7.58 -52.48 -0.40 1.17 16
31 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16
32 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16
33 H 0.11 2.30 4.46 -52.48 -0.23 2.06 16
34 H 0.29 6.58 8.29 -40.82 -0.34 6.24 16
35 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16
36 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16
LS Contribution 312.04 15.07 4.70 4.70
Total: -1.00 -27.38 312.04 -8.04 -35.42
By element:
Atomic # 1 Polarization: 7.32 SS G_CDS: -3.01 Total: 4.32 kcal
Atomic # 6 Polarization: -9.96 SS G_CDS: -5.96 Total: -15.92 kcal
Atomic # 7 Polarization: -39.74 SS G_CDS: 0.30 Total: -39.44 kcal
Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.18 kcal
Atomic # 14 Polarization: 19.26 SS G_CDS: -4.15 Total: 15.10 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -27.38 -8.04 -35.42 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001251427122.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.681 kcal
(2) G-P(sol) polarization free energy of solvation -27.382 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.298 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.43 seconds