Wall clock time and date at job start Tue Mar 31 2020 10:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46952 * 2 1 4 4 N 1.46902 * 109.46620 * 119.99858 * 2 1 3 5 5 C 1.46894 * 111.00187 * 275.00128 * 4 2 1 6 6 C 1.50699 * 109.47243 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00113 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00006 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47220 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99990 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99751 * 359.97438 * 12 10 9 14 14 Si 1.86788 * 119.99848 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47585 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47312 * 119.99913 * 14 12 10 17 17 H 1.48503 * 109.47205 * 239.99636 * 14 12 10 18 18 C 1.50699 * 109.47255 * 239.99759 * 2 1 3 19 19 C 1.38270 * 119.97533 * 279.72793 * 18 2 1 20 20 C 1.38217 * 120.06064 * 180.27493 * 19 18 2 21 21 C 1.38319 * 120.01180 * 359.97438 * 20 19 18 22 22 Cl 1.73594 * 120.02299 * 180.02562 * 21 20 19 23 23 C 1.38547 * 119.95053 * 0.02562 * 21 20 19 24 24 F 1.35106 * 120.02686 * 180.02562 * 23 21 20 25 25 C 1.38195 * 119.97710 * 100.00310 * 18 2 1 26 26 H 1.09007 * 109.46674 * 60.00387 * 1 2 3 27 27 H 1.09005 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47420 * 299.99981 * 1 2 3 29 29 H 1.00899 * 111.00102 * 38.95746 * 4 2 1 30 30 H 1.09001 * 109.46971 * 300.00316 * 5 4 2 31 31 H 1.08993 * 109.47298 * 60.00206 * 5 4 2 32 32 H 0.97006 * 120.00225 * 359.97438 * 8 6 5 33 33 H 1.09007 * 109.46519 * 299.99596 * 9 8 6 34 34 H 1.08993 * 109.47107 * 59.99506 * 9 8 6 35 35 H 0.97007 * 120.00258 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.96720 * 0.25369 * 19 18 2 37 37 H 1.07999 * 119.99074 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.00042 * 359.74707 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2225 2.3469 6 6 2.5882 -0.5216 3.5558 7 8 2.8685 -1.6984 3.4701 8 7 2.7283 0.1205 4.7324 9 6 3.2196 -0.6030 5.9078 10 6 3.2828 0.3355 7.0853 11 1 2.9871 1.3678 6.9695 12 6 3.7193 -0.1234 8.3100 13 7 4.0799 -1.3802 8.4507 14 14 3.7984 1.0401 9.7691 15 1 3.3412 2.3898 9.3515 16 1 2.9194 0.5341 10.8540 17 1 5.1967 1.1211 10.2624 18 6 2.0324 -0.7104 -1.2304 19 6 2.0719 -2.0922 -1.2626 20 6 2.5376 -2.7455 -2.3880 21 6 2.9643 -2.0173 -3.4838 22 17 3.5487 -2.8375 -4.8978 23 6 2.9250 -0.6327 -3.4521 24 9 3.3409 0.0801 -4.5218 25 6 2.4586 0.0196 -2.3236 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.4495 -1.4979 1.4101 30 1 2.7587 1.0461 2.1183 31 1 1.0870 0.6162 2.5525 32 1 2.5038 1.0617 4.8011 33 1 2.5432 -1.4268 6.1362 34 1 4.2150 -0.9964 5.7024 35 1 4.3873 -1.7031 9.3123 36 1 1.7388 -2.6615 -0.4073 37 1 2.5676 -3.8248 -2.4121 38 1 2.4278 1.0988 -2.2976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319804323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:18 Heat of formation + Delta-G solvation = -70.083162 kcal Electronic energy + Delta-G solvation = -22440.769755 eV Core-core repulsion = 18644.114892 eV Total energy + Delta-G solvation = -3796.654863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.21830 -39.93097 -38.85525 -37.15192 -36.20835 -34.18953 -32.39977 -31.98212 -30.95867 -29.33861 -27.75402 -25.72673 -23.94323 -23.32677 -22.32664 -20.97173 -19.77422 -18.07087 -17.15895 -16.96696 -16.63322 -16.05509 -15.92343 -15.68637 -15.24594 -14.90717 -14.46332 -14.31977 -14.09450 -13.96860 -13.54354 -13.46114 -13.05486 -12.80073 -12.65078 -12.43298 -12.24200 -12.00700 -11.81459 -11.55479 -11.48574 -11.34929 -11.16025 -10.97925 -10.92550 -10.34832 -9.41107 -9.29930 -9.13404 -8.88725 -8.76966 -8.52206 -7.91110 -6.19553 -4.26564 0.65047 0.79700 1.71662 3.10119 3.21235 3.28388 3.31169 3.32803 3.58497 3.84115 4.18844 4.31067 4.41397 4.47785 4.75499 4.79221 4.83240 4.95847 5.16634 5.19085 5.24167 5.29951 5.37708 5.48249 5.54949 5.58625 5.66146 5.75597 5.85185 6.09096 6.38911 6.75207 7.20345 7.28886 7.40308 7.48902 7.63864 7.94142 8.59144 8.75324 9.06882 9.40256 10.90655 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.002078 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.270391 B =13472.785950 C =13808.548849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.120 3.880 3 H 0.093 0.907 4 N -0.664 5.664 5 C 0.040 3.960 6 C 0.496 3.504 7 O -0.543 6.543 8 N -0.714 5.714 9 C 0.250 3.750 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.030 4.030 19 C -0.092 4.092 20 C -0.082 4.082 21 C -0.079 4.079 22 Cl -0.057 7.057 23 C 0.107 3.893 24 F -0.130 7.130 25 C -0.139 4.139 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.353 0.647 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.265 0.735 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 2.951 -23.838 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.010 3.990 3 H 0.112 0.888 4 N -0.296 5.296 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.421 6.421 8 N -0.363 5.363 9 C 0.130 3.870 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.031 4.031 19 C -0.111 4.111 20 C -0.100 4.100 21 C -0.106 4.106 22 Cl -0.028 7.028 23 C 0.087 3.913 24 F -0.108 7.108 25 C -0.158 4.158 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.174 0.826 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.374 1.985 -24.041 24.951 hybrid contribution -0.729 1.170 0.790 1.589 sum -7.103 3.155 -23.251 24.516 Atomic orbital electron populations 1.22526 0.95581 1.03021 1.02868 1.20491 0.93050 0.97579 0.87893 0.88842 1.60183 1.57988 1.09182 1.02286 1.21882 1.00947 0.96080 0.90337 1.20306 0.79484 0.87909 0.84292 1.90669 1.50713 1.16067 1.84692 1.46452 1.65417 1.13891 1.10545 1.19100 0.95029 0.92444 0.80455 1.21262 1.46058 0.96539 0.94309 0.91858 1.24961 0.94814 0.95345 0.98967 1.69983 1.42922 1.14347 1.24969 0.86360 0.77851 0.80652 0.82028 1.19651 1.20806 1.20771 1.19716 0.95786 0.93693 0.93947 1.21048 0.98623 0.93944 0.97456 1.21009 0.97224 1.00781 0.91017 1.20997 1.06771 0.90995 0.91872 1.98383 1.87092 1.78478 1.38813 1.17309 1.00949 0.87610 0.85422 1.91535 1.87770 1.77922 1.53579 1.20931 1.01857 1.01117 0.91927 0.91572 0.91780 0.91673 0.82603 0.88410 0.92507 0.77770 0.95594 0.95505 0.92475 0.84070 0.83916 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.14 37.16 0.34 -0.91 16 2 C 0.12 1.02 2.79 -68.86 -0.19 0.83 16 3 H 0.09 0.71 7.66 -51.93 -0.40 0.31 16 4 N -0.66 -7.71 5.32 -109.23 -0.58 -8.29 16 5 C 0.04 0.49 5.96 -4.98 -0.03 0.46 16 6 C 0.50 9.21 7.87 -10.99 -0.09 9.13 16 7 O -0.54 -12.44 16.20 5.56 0.09 -12.35 16 8 N -0.71 -14.28 5.55 -61.47 -0.34 -14.62 16 9 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 10 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16 11 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 14 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 C -0.03 -0.28 4.96 -104.63 -0.52 -0.79 16 19 C -0.09 -0.85 9.32 -39.58 -0.37 -1.22 16 20 C -0.08 -0.74 9.83 -39.56 -0.39 -1.13 16 21 C -0.08 -0.79 6.33 -39.44 -0.25 -1.04 16 22 Cl -0.06 -0.56 28.62 -51.86 -1.48 -2.04 16 23 C 0.11 1.10 7.28 -39.39 -0.29 0.81 16 24 F -0.13 -1.42 16.84 2.25 0.04 -1.38 16 25 C -0.14 -1.24 9.65 -39.52 -0.38 -1.62 16 26 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.06 0.44 7.45 -51.93 -0.39 0.06 16 29 H 0.35 4.19 7.52 -39.29 -0.30 3.90 16 30 H 0.10 1.06 8.06 -51.93 -0.42 0.64 16 31 H 0.06 0.57 7.44 -51.93 -0.39 0.19 16 32 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.14 1.22 7.24 -52.48 -0.38 0.84 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.14 0.99 8.04 -52.49 -0.42 0.57 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -31.98 348.19 -8.60 -40.58 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.67 Total: 4.57 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.61 Total: -2.18 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.19 Total: -47.97 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.98 -8.60 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319804323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.508 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds