Wall clock time and date at job start Tue Mar 31 2020 10:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46952 * 2 1 4 4 N 1.46902 * 109.46620 * 119.99858 * 2 1 3 5 5 C 1.46894 * 111.00187 * 275.00128 * 4 2 1 6 6 C 1.50699 * 109.47243 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00113 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00006 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47220 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99990 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99751 * 359.97438 * 12 10 9 14 14 Si 1.86788 * 119.99848 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47585 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47312 * 119.99913 * 14 12 10 17 17 H 1.48503 * 109.47205 * 239.99636 * 14 12 10 18 18 C 1.50699 * 109.47255 * 239.99759 * 2 1 3 19 19 C 1.38270 * 119.97533 * 279.72793 * 18 2 1 20 20 C 1.38217 * 120.06064 * 180.27493 * 19 18 2 21 21 C 1.38319 * 120.01180 * 359.97438 * 20 19 18 22 22 Cl 1.73594 * 120.02299 * 180.02562 * 21 20 19 23 23 C 1.38547 * 119.95053 * 0.02562 * 21 20 19 24 24 F 1.35106 * 120.02686 * 180.02562 * 23 21 20 25 25 C 1.38195 * 119.97710 * 100.00310 * 18 2 1 26 26 H 1.09007 * 109.46674 * 60.00387 * 1 2 3 27 27 H 1.09005 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47420 * 299.99981 * 1 2 3 29 29 H 1.00899 * 111.00102 * 38.95746 * 4 2 1 30 30 H 1.09001 * 109.46971 * 300.00316 * 5 4 2 31 31 H 1.08993 * 109.47298 * 60.00206 * 5 4 2 32 32 H 0.97006 * 120.00225 * 359.97438 * 8 6 5 33 33 H 1.09007 * 109.46519 * 299.99596 * 9 8 6 34 34 H 1.08993 * 109.47107 * 59.99506 * 9 8 6 35 35 H 0.97007 * 120.00258 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.96720 * 0.25369 * 19 18 2 37 37 H 1.07999 * 119.99074 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.00042 * 359.74707 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2225 2.3469 6 6 2.5882 -0.5216 3.5558 7 8 2.8685 -1.6984 3.4701 8 7 2.7283 0.1205 4.7324 9 6 3.2196 -0.6030 5.9078 10 6 3.2828 0.3355 7.0853 11 1 2.9871 1.3678 6.9695 12 6 3.7193 -0.1234 8.3100 13 7 4.0799 -1.3802 8.4507 14 14 3.7984 1.0401 9.7691 15 1 3.3412 2.3898 9.3515 16 1 2.9194 0.5341 10.8540 17 1 5.1967 1.1211 10.2624 18 6 2.0324 -0.7104 -1.2304 19 6 2.0719 -2.0922 -1.2626 20 6 2.5376 -2.7455 -2.3880 21 6 2.9643 -2.0173 -3.4838 22 17 3.5487 -2.8375 -4.8978 23 6 2.9250 -0.6327 -3.4521 24 9 3.3409 0.0801 -4.5218 25 6 2.4586 0.0196 -2.3236 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.4495 -1.4979 1.4101 30 1 2.7587 1.0461 2.1183 31 1 1.0870 0.6162 2.5525 32 1 2.5038 1.0617 4.8011 33 1 2.5432 -1.4268 6.1362 34 1 4.2150 -0.9964 5.7024 35 1 4.3873 -1.7031 9.3123 36 1 1.7388 -2.6615 -0.4073 37 1 2.5676 -3.8248 -2.4121 38 1 2.4278 1.0988 -2.2976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319804323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:17 Heat of formation + Delta-G solvation = -91.753872 kcal Electronic energy + Delta-G solvation = -22441.709468 eV Core-core repulsion = 18644.114892 eV Total energy + Delta-G solvation = -3797.594575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.00773 -40.77921 -40.22538 -37.95859 -37.05887 -36.04642 -34.31853 -32.87181 -31.69982 -30.16463 -29.38859 -26.97811 -24.84059 -24.25941 -23.86331 -21.68834 -21.35704 -19.20439 -18.48252 -17.76181 -17.54931 -17.30568 -17.06005 -16.82420 -16.70056 -16.27531 -15.53347 -15.39686 -15.17325 -14.90330 -14.42736 -14.30539 -14.25005 -14.01005 -13.83793 -13.75989 -13.38238 -13.05607 -12.87856 -12.84271 -12.70909 -12.53301 -12.20813 -12.20079 -12.04816 -11.84360 -11.43873 -10.80204 -10.69998 -10.00216 -9.78847 -9.63447 -9.35591 -8.28084 -6.44248 -0.08051 0.09310 0.96993 1.44385 1.45148 1.58537 1.84883 2.27982 2.39297 2.55807 2.99451 3.07113 3.31992 3.62260 3.74294 3.99319 4.09865 4.16095 4.20024 4.32470 4.42345 4.54762 4.59174 4.69903 4.86055 4.93135 4.97655 5.12295 5.14164 5.27259 5.28331 5.37699 5.51801 5.69326 5.72104 5.87381 5.99243 6.33044 6.68031 6.98840 7.25633 7.57203 8.84248 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.002078 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.270391 B =13472.785950 C =13808.548849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.125 3.875 3 H 0.111 0.889 4 N -0.683 5.683 5 C 0.058 3.942 6 C 0.491 3.509 7 O -0.592 6.592 8 N -0.710 5.710 9 C 0.267 3.733 10 C -0.553 4.553 11 H 0.085 0.915 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.984 3.016 15 H -0.252 1.252 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.034 4.034 19 C -0.099 4.099 20 C -0.085 4.085 21 C -0.090 4.090 22 Cl -0.060 7.060 23 C 0.091 3.909 24 F -0.137 7.137 25 C -0.134 4.134 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.349 0.651 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.409 0.591 33 H -0.013 1.013 34 H -0.016 1.016 35 H 0.268 0.732 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 5.663 -24.016 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 H 0.129 0.871 4 N -0.315 5.315 5 C -0.074 4.074 6 C 0.278 3.722 7 O -0.473 6.473 8 N -0.361 5.361 9 C 0.144 3.856 10 C -0.591 4.591 11 H 0.103 0.897 12 C -0.198 4.198 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.175 1.175 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.035 4.035 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.118 4.118 22 Cl -0.031 7.031 23 C 0.071 3.929 24 F -0.116 7.116 25 C -0.153 4.153 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.169 0.831 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.244 0.756 33 H 0.005 0.995 34 H 0.002 0.998 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.469 4.748 -24.266 25.830 hybrid contribution -0.398 0.251 0.775 0.907 sum -7.867 4.999 -23.491 25.272 Atomic orbital electron populations 1.22479 0.94166 1.03124 1.03747 1.20542 0.94070 0.97818 0.85963 0.87083 1.60145 1.58975 1.09480 1.02925 1.21790 1.02834 0.95446 0.87332 1.21490 0.77820 0.87572 0.85277 1.90647 1.52509 1.18652 1.85522 1.46181 1.65628 1.14601 1.09672 1.18498 0.92003 0.92102 0.83009 1.21671 1.45581 0.97426 0.94443 0.89692 1.26072 0.94150 0.97033 1.02535 1.70145 1.44127 1.16809 1.25957 0.85122 0.77738 0.78879 0.77540 1.17501 1.20552 1.20646 1.19854 0.95676 0.93634 0.94341 1.21187 0.98619 0.94426 0.97506 1.21172 0.96910 1.01517 0.90713 1.21154 1.07259 0.91241 0.92098 1.98377 1.87175 1.78539 1.39043 1.17535 1.01781 0.87758 0.85811 1.91513 1.87988 1.78048 1.54016 1.21133 1.00802 1.02223 0.91135 0.90335 0.92160 0.91079 0.83067 0.85926 0.89082 0.75551 0.99506 0.99783 0.92323 0.83894 0.82684 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.14 71.98 0.66 -1.23 16 2 C 0.13 1.74 2.79 44.17 0.12 1.87 16 3 H 0.11 1.19 7.66 -2.39 -0.02 1.18 16 4 N -0.68 -14.39 5.32 -499.49 -2.66 -17.05 16 5 C 0.06 1.25 5.96 85.56 0.51 1.76 16 6 C 0.49 17.96 7.87 87.66 0.69 18.65 16 7 O -0.59 -27.81 16.20 -3.02 -0.05 -27.86 16 8 N -0.71 -28.12 5.55 -466.78 -2.59 -30.71 16 9 C 0.27 14.31 5.43 85.63 0.46 14.77 16 10 C -0.55 -29.41 9.28 25.60 0.24 -29.17 16 11 H 0.09 4.05 7.60 -2.91 -0.02 4.02 16 12 C 0.00 0.08 5.46 84.66 0.46 0.55 16 13 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 14 Si 0.98 41.62 29.54 68.60 2.03 43.65 16 15 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 16 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 18 C -0.03 -0.55 4.96 -19.87 -0.10 -0.65 16 19 C -0.10 -1.72 9.32 22.27 0.21 -1.51 16 20 C -0.08 -1.48 9.83 22.28 0.22 -1.26 16 21 C -0.09 -1.76 6.33 22.36 0.14 -1.62 16 22 Cl -0.06 -1.17 28.62 -2.72 -0.08 -1.25 16 23 C 0.09 1.77 7.28 22.39 0.16 1.93 16 24 F -0.14 -2.90 16.84 44.97 0.76 -2.14 16 25 C -0.13 -2.10 9.65 22.31 0.22 -1.89 16 26 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.70 8.13 -2.38 -0.02 0.68 16 28 H 0.07 0.70 7.45 -2.39 -0.02 0.68 16 29 H 0.35 7.87 7.52 -89.69 -0.67 7.19 16 30 H 0.12 2.14 8.06 -2.39 -0.02 2.12 16 31 H 0.09 1.43 7.44 -2.39 -0.02 1.41 16 32 H 0.41 12.94 8.32 -92.70 -0.77 12.17 16 33 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 34 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 36 H 0.14 2.40 7.24 -2.91 -0.02 2.38 16 37 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.17 1.77 8.04 -2.91 -0.02 1.74 16 Total: -1.00 -72.21 348.19 1.35 -70.86 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.34 Total: 17.75 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 3.99 Total: 2.21 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -4.96 Total: -103.22 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.05 Total: -27.86 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.76 Total: -2.14 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -72.21 1.35 -70.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319804323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.898 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds