Wall clock time and date at job start Tue Mar 31 2020 10:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21556 * 120.00350 * 359.97438 * 7 6 5 9 9 C 1.47783 * 119.99797 * 179.97438 * 7 6 5 10 10 C 1.39637 * 120.14249 * 0.02562 * 9 7 6 11 11 C 1.37888 * 119.91232 * 179.97438 * 10 9 7 12 12 C 1.38397 * 120.21020 * 359.97438 * 11 10 9 13 13 C 1.38460 * 120.29235 * 0.02562 * 12 11 10 14 14 F 1.35095 * 119.96059 * 180.02562 * 13 12 11 15 15 C 1.38386 * 120.08162 * 359.74379 * 13 12 11 16 16 Cl 1.73595 * 120.10600 * 180.25902 * 15 13 12 17 17 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 3 2 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 3 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 3 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00121 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00072 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99871 * 22 20 18 26 26 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 28 28 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 29 29 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 30 30 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 31 31 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 32 32 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 33 33 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 34 34 H 1.07995 * 120.04311 * 359.97438 * 10 9 7 35 35 H 1.08003 * 119.89685 * 180.02562 * 11 10 9 36 36 H 1.08006 * 119.85182 * 179.97438 * 12 11 10 37 37 H 0.97000 * 119.99792 * 264.99726 * 17 3 2 38 38 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1654 2.1462 0.2575 9 6 5.8884 4.4473 -0.0355 10 6 4.9955 5.5027 -0.2323 11 6 5.4696 6.7927 -0.3443 12 6 6.8279 7.0451 -0.2618 13 6 7.7209 6.0050 -0.0668 14 9 9.0453 6.2591 0.0133 15 6 7.2579 4.7063 0.0521 16 17 8.3764 3.4027 0.3033 17 7 1.6524 2.0975 -1.2518 18 6 0.4157 2.6734 -1.3688 19 1 -0.2740 2.6452 -0.5381 20 6 0.0506 3.2991 -2.5530 21 7 0.8912 3.3339 -3.5651 22 14 -1.6337 4.0915 -2.7099 23 1 -1.5562 5.5093 -2.2749 24 1 -2.0790 4.0317 -4.1253 25 1 -2.6049 3.3636 -1.8542 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 3.8500 1.0377 1.0960 32 1 3.9955 0.8311 -0.6660 33 1 3.4411 3.5483 -0.1315 34 1 3.9351 5.3089 -0.2967 35 1 4.7788 7.6089 -0.4961 36 1 7.1929 8.0576 -0.3507 37 1 2.2720 2.1232 -1.9978 38 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698623217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:52 Heat of formation + Delta-G solvation = -48.706109 kcal Electronic energy + Delta-G solvation = -23596.150791 eV Core-core repulsion = 19800.422907 eV Total energy + Delta-G solvation = -3795.727884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.14479 -40.12909 -38.30665 -36.72386 -36.43611 -33.84027 -32.47160 -31.43765 -30.64979 -29.76365 -27.90015 -24.67601 -23.53345 -22.89677 -22.32841 -20.42130 -19.98917 -18.44698 -17.29159 -16.85317 -16.61937 -16.14034 -15.99271 -15.40719 -15.32196 -14.66453 -14.49538 -14.07323 -13.80922 -13.57120 -13.24128 -13.11716 -12.95424 -12.56779 -12.36626 -12.12818 -11.86949 -11.59722 -11.49311 -11.14596 -11.01145 -10.92674 -10.75674 -10.47574 -10.23534 -10.06628 -9.59416 -9.41377 -9.26645 -9.01654 -8.89292 -8.66768 -7.09992 -5.87431 -3.17059 0.45399 0.76806 1.99847 2.75388 3.26160 3.34427 3.41580 3.42936 3.58997 3.94006 4.42136 4.48807 4.56613 4.74234 4.93066 5.20542 5.34587 5.38919 5.51025 5.54267 5.65107 5.78032 5.87384 5.92119 5.93155 5.98874 6.12393 6.37956 6.38356 6.49239 6.53430 6.57007 6.81450 6.98020 7.20844 7.60920 7.80393 8.29612 8.42919 9.41805 9.96424 10.32560 11.34184 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.003875 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.564851 B = 7223.168167 C = 8683.724005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.703 5.703 7 C 0.548 3.452 8 O -0.524 6.524 9 C -0.096 4.096 10 C -0.079 4.079 11 C -0.093 4.093 12 C -0.122 4.122 13 C 0.094 3.906 14 F -0.127 7.127 15 C -0.029 4.029 16 Cl -0.015 7.015 17 N -0.722 5.722 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.409 0.591 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.385 0.615 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 5.533 8.362 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.009 4.009 6 N -0.355 5.355 7 C 0.333 3.667 8 O -0.402 6.402 9 C -0.100 4.100 10 C -0.098 4.098 11 C -0.111 4.111 12 C -0.142 4.142 13 C 0.074 3.926 14 F -0.105 7.105 15 C -0.058 4.058 16 Cl 0.015 6.985 17 N -0.365 5.365 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.207 1.207 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.247 0.753 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.219 0.781 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.337 4.805 8.524 14.234 hybrid contribution -0.779 0.751 -0.570 1.223 sum 9.558 5.556 7.955 13.620 Atomic orbital electron populations 1.21767 0.95693 0.99661 1.03239 1.22063 0.96978 0.98320 1.00089 1.20579 0.89826 0.92924 0.91450 0.92777 1.21722 0.95655 0.82102 1.01380 1.45878 1.06523 1.11154 1.71987 1.17918 0.83040 0.87521 0.78192 1.90845 1.55497 1.45182 1.48661 1.19790 0.91350 0.95359 1.03482 1.21574 1.00549 0.91672 0.95972 1.21104 0.94605 0.97363 0.98035 1.21314 0.93230 0.98785 1.00825 1.17275 0.78595 0.91941 1.04795 1.91540 1.30676 1.94598 1.93721 1.21052 0.91626 0.89135 1.03976 1.98425 1.59386 1.46550 1.94132 1.42475 1.16799 1.65877 1.11299 1.19205 0.92040 1.27625 0.98121 0.90878 1.24727 0.98000 1.01520 0.96373 1.69661 1.35239 1.48680 1.04061 0.86279 0.84180 0.79310 0.76934 1.21769 1.21870 1.20742 0.94869 0.94130 0.89659 0.92484 0.93808 0.91567 0.91535 0.75325 0.83327 0.83545 0.83518 0.78062 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.18 37.16 0.34 -2.18 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.16 2.84 2.59 -67.93 -0.18 2.66 16 4 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 5 C 0.12 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.70 -11.12 5.34 -61.27 -0.33 -11.45 16 7 C 0.55 9.02 7.77 -12.36 -0.10 8.92 16 8 O -0.52 -9.86 13.97 5.32 0.07 -9.79 16 9 C -0.10 -1.37 5.88 -104.94 -0.62 -1.98 16 10 C -0.08 -0.93 9.54 -39.19 -0.37 -1.30 16 11 C -0.09 -0.88 10.03 -39.65 -0.40 -1.28 16 12 C -0.12 -1.17 10.02 -39.44 -0.40 -1.57 16 13 C 0.09 1.15 7.27 -39.45 -0.29 0.87 16 14 F -0.13 -1.58 16.83 2.25 0.04 -1.54 16 15 C -0.03 -0.41 6.36 -39.00 -0.25 -0.66 16 16 Cl -0.01 -0.22 25.68 -51.86 -1.33 -1.55 16 17 N -0.72 -15.62 4.51 -53.42 -0.24 -15.86 16 18 C -0.24 -5.77 7.75 -15.06 -0.12 -5.89 16 19 H 0.07 1.73 7.32 -52.49 -0.38 1.35 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -25.75 13.06 55.49 0.72 -25.03 16 22 Si 0.90 20.67 29.55 -169.99 -5.02 15.65 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.74 5.99 -51.93 -0.31 1.43 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.41 6.33 6.17 -40.82 -0.25 6.08 16 34 H 0.15 1.67 6.40 -52.49 -0.34 1.34 16 35 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.39 9.21 7.80 -40.82 -0.32 8.89 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -28.47 338.02 -8.16 -36.63 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.54 Total: 11.11 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.63 Total: -3.27 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.16 Total: -52.33 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.33 Total: -1.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.47 -8.16 -36.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698623217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.073 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds