Wall clock time and date at job start Tue Mar 31 2020 10:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21556 * 120.00350 * 359.97438 * 7 6 5 9 9 C 1.47783 * 119.99797 * 179.97438 * 7 6 5 10 10 C 1.39637 * 120.14249 * 0.02562 * 9 7 6 11 11 C 1.37888 * 119.91232 * 179.97438 * 10 9 7 12 12 C 1.38397 * 120.21020 * 359.97438 * 11 10 9 13 13 C 1.38460 * 120.29235 * 0.02562 * 12 11 10 14 14 F 1.35095 * 119.96059 * 180.02562 * 13 12 11 15 15 C 1.38386 * 120.08162 * 359.74379 * 13 12 11 16 16 Cl 1.73595 * 120.10600 * 180.25902 * 15 13 12 17 17 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 3 2 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 3 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 3 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00121 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00072 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99871 * 22 20 18 26 26 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 28 28 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 29 29 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 30 30 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 31 31 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 32 32 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 33 33 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 34 34 H 1.07995 * 120.04311 * 359.97438 * 10 9 7 35 35 H 1.08003 * 119.89685 * 180.02562 * 11 10 9 36 36 H 1.08006 * 119.85182 * 179.97438 * 12 11 10 37 37 H 0.97000 * 119.99792 * 264.99726 * 17 3 2 38 38 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1654 2.1462 0.2575 9 6 5.8884 4.4473 -0.0355 10 6 4.9955 5.5027 -0.2323 11 6 5.4696 6.7927 -0.3443 12 6 6.8279 7.0451 -0.2618 13 6 7.7209 6.0050 -0.0668 14 9 9.0453 6.2591 0.0133 15 6 7.2579 4.7063 0.0521 16 17 8.3764 3.4027 0.3033 17 7 1.6524 2.0975 -1.2518 18 6 0.4157 2.6734 -1.3688 19 1 -0.2740 2.6452 -0.5381 20 6 0.0506 3.2991 -2.5530 21 7 0.8912 3.3339 -3.5651 22 14 -1.6337 4.0915 -2.7099 23 1 -1.5562 5.5093 -2.2749 24 1 -2.0790 4.0317 -4.1253 25 1 -2.6049 3.3636 -1.8542 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 3.8500 1.0377 1.0960 32 1 3.9955 0.8311 -0.6660 33 1 3.4411 3.5483 -0.1315 34 1 3.9351 5.3089 -0.2967 35 1 4.7788 7.6089 -0.4961 36 1 7.1929 8.0576 -0.3507 37 1 2.2720 2.1232 -1.9978 38 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698623217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:52 Heat of formation + Delta-G solvation = -65.482775 kcal Electronic energy + Delta-G solvation = -23596.878282 eV Core-core repulsion = 19800.422907 eV Total energy + Delta-G solvation = -3796.455375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.08584 -41.27294 -39.41207 -38.18104 -37.53446 -35.28870 -34.15900 -32.44082 -31.61454 -31.40330 -29.34371 -26.00230 -25.07546 -23.95271 -23.53062 -21.71644 -21.34140 -19.64399 -19.00608 -17.87698 -17.56306 -17.27234 -17.00794 -16.85834 -16.57273 -16.13704 -15.65713 -15.37919 -15.25460 -14.79748 -14.56871 -14.42409 -14.26555 -13.95550 -13.57515 -13.22546 -12.95786 -12.79995 -12.76221 -12.71293 -12.59354 -12.37490 -12.21697 -12.08649 -11.82292 -11.59763 -11.29990 -10.88328 -10.65091 -10.27964 -9.93062 -9.84070 -8.94268 -7.83623 -5.10867 -0.50878 -0.15068 0.95576 1.53100 1.56092 1.61973 1.69833 2.08428 2.52333 2.63313 2.97992 3.46572 3.51741 3.68159 3.78378 3.92790 3.97888 4.09706 4.31865 4.40599 4.50719 4.57972 4.59482 4.77710 4.79935 4.90510 4.97882 5.12035 5.13278 5.15917 5.23404 5.46192 5.54999 5.59265 5.65867 5.74663 6.36134 6.53086 7.16302 7.44624 8.15553 8.41151 9.39058 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.003875 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.564851 B = 7223.168167 C = 8683.724005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.062 0.938 5 C 0.123 3.877 6 N -0.701 5.701 7 C 0.545 3.455 8 O -0.555 6.555 9 C -0.117 4.117 10 C -0.079 4.079 11 C -0.080 4.080 12 C -0.102 4.102 13 C 0.085 3.915 14 F -0.131 7.131 15 C -0.048 4.048 16 Cl -0.037 7.037 17 N -0.727 5.727 18 C -0.216 4.216 19 H 0.081 0.919 20 C -0.068 4.068 21 N -0.967 5.967 22 Si 0.956 3.044 23 H -0.286 1.286 24 H -0.308 1.308 25 H -0.274 1.274 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.411 0.589 34 H 0.152 0.848 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.372 0.628 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.121 7.050 9.670 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.080 0.920 5 C -0.001 4.001 6 N -0.352 5.352 7 C 0.332 3.668 8 O -0.434 6.434 9 C -0.121 4.121 10 C -0.098 4.098 11 C -0.097 4.097 12 C -0.121 4.121 13 C 0.064 3.936 14 F -0.109 7.109 15 C -0.077 4.077 16 Cl -0.007 7.007 17 N -0.368 5.368 18 C -0.348 4.348 19 H 0.098 0.902 20 C -0.261 4.261 21 N -0.618 5.618 22 Si 0.787 3.213 23 H -0.214 1.214 24 H -0.235 1.235 25 H -0.199 1.199 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.249 0.751 34 H 0.170 0.830 35 H 0.201 0.799 36 H 0.202 0.798 37 H 0.205 0.795 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.618 6.312 9.888 15.170 hybrid contribution -0.554 0.280 -0.900 1.093 sum 9.064 6.592 8.989 14.367 Atomic orbital electron populations 1.21694 0.95921 1.00530 1.01852 1.21992 0.96651 0.97447 1.00994 1.20712 0.90669 0.93291 0.89675 0.91987 1.21611 0.94490 0.82346 1.01643 1.45839 1.06554 1.11005 1.71849 1.18297 0.82790 0.88388 0.77357 1.90820 1.56089 1.46382 1.50153 1.19671 0.91829 0.94702 1.05931 1.21727 1.00340 0.92183 0.95598 1.21530 0.95196 0.97166 0.95855 1.21758 0.92721 0.99634 0.97987 1.17505 0.78921 0.91837 1.05291 1.91532 1.31041 1.94519 1.93811 1.21236 0.91405 0.89471 1.05579 1.98406 1.60063 1.47834 1.94419 1.42586 1.15836 1.66078 1.12303 1.19489 0.92529 1.25137 0.97599 0.90158 1.25316 1.00702 1.03435 0.96630 1.69805 1.36812 1.50799 1.04384 0.85391 0.81270 0.78737 0.75857 1.21368 1.23530 1.19901 0.93037 0.93108 0.93213 0.93711 0.90745 0.90008 0.93004 0.75086 0.83041 0.79871 0.79787 0.79549 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.18 71.98 0.66 -3.96 16 2 C -0.13 -4.08 5.61 30.59 0.17 -3.90 16 3 C 0.17 5.56 2.59 44.99 0.12 5.68 16 4 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 5 C 0.12 3.90 5.23 86.38 0.45 4.35 16 6 N -0.70 -21.98 5.34 -466.02 -2.49 -24.47 16 7 C 0.54 18.09 7.77 86.77 0.67 18.76 16 8 O -0.55 -21.33 13.97 -3.89 -0.05 -21.39 16 9 C -0.12 -3.31 5.88 -20.07 -0.12 -3.42 16 10 C -0.08 -1.73 9.54 22.52 0.21 -1.52 16 11 C -0.08 -1.23 10.03 22.22 0.22 -1.00 16 12 C -0.10 -1.60 10.02 22.36 0.22 -1.37 16 13 C 0.08 1.94 7.27 22.36 0.16 2.10 16 14 F -0.13 -3.10 16.83 44.97 0.76 -2.34 16 15 C -0.05 -1.36 6.36 22.65 0.14 -1.21 16 16 Cl -0.04 -1.15 25.68 -2.72 -0.07 -1.22 16 17 N -0.73 -31.19 4.51 -322.93 -1.46 -32.65 16 18 C -0.22 -10.26 7.75 84.04 0.65 -9.61 16 19 H 0.08 3.67 7.32 -2.91 -0.02 3.65 16 20 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 21 N -0.97 -54.40 13.06 21.65 0.28 -54.11 16 22 Si 0.96 42.42 29.55 68.60 2.03 44.44 16 23 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.31 -14.33 7.11 99.48 0.71 -13.63 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.97 5.99 -2.39 -0.01 1.95 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.41 12.50 6.17 -92.71 -0.57 11.93 16 34 H 0.15 3.18 6.40 -2.91 -0.02 3.16 16 35 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.37 18.00 7.80 -92.71 -0.72 17.28 16 38 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 Total: -1.00 -62.53 338.02 2.86 -59.67 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.18 Total: 30.24 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 4.04 Total: 1.82 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -3.66 Total: -111.23 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.76 Total: -2.34 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -62.53 2.86 -59.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698623217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.812 kcal (2) G-P(sol) polarization free energy of solvation -62.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds