Wall clock time and date at job start Tue Mar 31 2020 10:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 119.99994 * 2 1 4 4 H 1.08005 * 119.99909 * 201.62835 * 3 2 1 5 5 C 1.38808 * 120.00043 * 21.62723 * 3 2 1 6 6 N 1.31614 * 120.00474 * 12.76708 * 5 3 2 7 7 Si 1.86802 * 119.99840 * 192.76949 * 5 3 2 8 8 H 1.48500 * 109.47453 * 60.00230 * 7 5 3 9 9 H 1.48504 * 109.47028 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47248 * 299.99793 * 7 5 3 11 11 C 1.46503 * 119.99784 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46875 * 269.99554 * 11 2 1 13 13 N 1.46493 * 109.46948 * 179.97438 * 12 11 2 14 14 C 1.46496 * 120.00547 * 270.00432 * 13 12 11 15 15 C 1.34787 * 119.99975 * 90.00283 * 13 12 11 16 16 O 1.21565 * 119.99485 * 4.85483 * 15 13 12 17 17 C 1.47769 * 120.00044 * 184.57834 * 15 13 12 18 18 C 1.39606 * 120.14344 * 311.94799 * 17 15 13 19 19 C 1.38130 * 119.83865 * 179.78688 * 18 17 15 20 20 F 1.35101 * 119.93741 * 180.22969 * 19 18 17 21 21 C 1.38625 * 120.12874 * 0.49545 * 19 18 17 22 22 C 1.38249 * 120.29201 * 359.73554 * 21 19 18 23 23 C 1.38159 * 120.15500 * 0.02781 * 22 21 19 24 24 Cl 1.73601 * 120.06207 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47162 * 275.12555 * 1 2 3 26 26 H 1.09003 * 109.47156 * 35.12246 * 1 2 3 27 27 H 1.08997 * 109.47405 * 155.12347 * 1 2 3 28 28 H 0.96993 * 120.00685 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.46885 * 150.00224 * 11 2 1 30 30 H 1.08991 * 109.47290 * 29.99698 * 11 2 1 31 31 H 1.09005 * 109.46651 * 60.00157 * 12 11 2 32 32 H 1.09004 * 109.47029 * 300.00378 * 12 11 2 33 33 H 1.09006 * 109.46788 * 264.95142 * 14 13 12 34 34 H 1.09004 * 109.46979 * 24.94598 * 14 13 12 35 35 H 1.08994 * 109.47547 * 144.94797 * 14 13 12 36 36 H 1.07999 * 120.08534 * 0.02562 * 18 17 15 37 37 H 1.07995 * 119.85841 * 179.71526 * 21 19 18 38 38 H 1.07988 * 119.92242 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1727 1.2188 -0.3448 5 6 1.5289 2.3457 0.4431 6 7 0.3862 2.2739 1.0921 7 14 2.3154 4.0086 0.1180 8 1 2.4541 4.2129 -1.3463 9 1 1.4602 5.0806 0.6880 10 1 3.6567 4.0545 0.7534 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1844 -2.9800 1.4413 14 6 2.4514 -4.2485 1.4409 15 6 4.5323 -2.9806 1.4411 16 8 5.1405 -1.9319 1.5305 17 6 5.2705 -4.2566 1.3384 18 6 4.9218 -5.3358 2.1524 19 6 5.6133 -6.5270 2.0481 20 9 5.2744 -7.5741 2.8316 21 6 6.6578 -6.6484 1.1448 22 6 7.0108 -5.5816 0.3394 23 6 6.3241 -4.3862 0.4305 24 17 6.7698 -3.0480 -0.5815 25 1 -0.3633 0.0918 1.0235 26 1 -0.3633 0.8406 -0.5913 27 1 -0.3634 -0.9323 -0.4323 28 1 -0.0478 3.0843 1.4014 29 1 3.1499 -1.1382 -0.5143 30 1 1.6084 -2.0281 -0.5146 31 1 1.5000 -1.8415 1.9556 32 1 3.0416 -0.9515 1.9559 33 1 2.3481 -4.6086 2.4645 34 1 1.4628 -4.0967 1.0076 35 1 2.9979 -4.9837 0.8504 36 1 4.1108 -5.2408 2.8594 37 1 7.1984 -7.5803 1.0701 38 1 7.8258 -5.6826 -0.3618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698998783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:01 Heat of formation + Delta-G solvation = -41.261234 kcal Electronic energy + Delta-G solvation = -23758.378543 eV Core-core repulsion = 19962.973493 eV Total energy + Delta-G solvation = -3795.405050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.00882 -41.50387 -39.48586 -37.82077 -37.50116 -36.46894 -33.67171 -32.65821 -31.38562 -30.10846 -27.93153 -27.72962 -26.00864 -24.41957 -23.74676 -22.41567 -20.83971 -18.91119 -18.72924 -18.14901 -17.76720 -17.32142 -17.04388 -16.88250 -16.65980 -16.16378 -15.58215 -15.23729 -15.15150 -14.88519 -14.55107 -14.41197 -14.13539 -13.93123 -13.90235 -13.56799 -13.24855 -13.11437 -12.79390 -12.77100 -12.63600 -12.45739 -12.28890 -12.09441 -12.08391 -12.00375 -11.62412 -11.01104 -10.69208 -10.30921 -9.84625 -9.71811 -8.79846 -7.86594 -5.33558 -0.44279 -0.14431 1.01248 1.43154 1.44930 1.50910 1.52645 1.87904 2.29868 2.49703 2.97850 3.27137 3.31458 3.53726 3.75963 3.83901 3.98232 4.08923 4.26802 4.28651 4.40397 4.56413 4.60033 4.66369 4.77685 4.83309 4.86125 4.86824 4.91257 4.98904 5.14446 5.33285 5.48269 5.53314 5.61647 5.72268 6.28472 6.32921 7.03966 7.13462 7.83608 8.24083 9.16182 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.003544 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.350873 B = 7899.079438 C = 8794.211800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.615 5.615 3 C -0.266 4.266 4 H 0.057 0.943 5 C -0.045 4.045 6 N -0.933 5.933 7 Si 0.963 3.037 8 H -0.277 1.277 9 H -0.286 1.286 10 H -0.283 1.283 11 C 0.149 3.851 12 C 0.112 3.888 13 N -0.602 5.602 14 C 0.067 3.933 15 C 0.545 3.455 16 O -0.559 6.559 17 C -0.103 4.103 18 C -0.111 4.111 19 C 0.100 3.900 20 F -0.130 7.130 21 C -0.104 4.104 22 C -0.077 4.077 23 C -0.023 4.023 24 Cl -0.061 7.061 25 H 0.009 0.991 26 H 0.017 0.983 27 H 0.037 0.963 28 H 0.250 0.750 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.186 0.814 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.800 -24.912 -0.123 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.339 5.339 3 C -0.396 4.396 4 H 0.075 0.925 5 C -0.241 4.241 6 N -0.579 5.579 7 Si 0.791 3.209 8 H -0.203 1.203 9 H -0.212 1.212 10 H -0.209 1.209 11 C 0.022 3.978 12 C -0.013 4.013 13 N -0.334 5.334 14 C -0.075 4.075 15 C 0.332 3.668 16 O -0.438 6.438 17 C -0.107 4.107 18 C -0.131 4.131 19 C 0.081 3.919 20 F -0.109 7.109 21 C -0.123 4.123 22 C -0.095 4.095 23 C -0.051 4.051 24 Cl -0.032 7.032 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.180 0.820 37 H 0.203 0.797 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.979 -24.140 -0.088 26.121 hybrid contribution 0.113 1.499 0.179 1.514 sum 10.092 -22.641 0.091 24.788 Atomic orbital electron populations 1.20616 0.81782 0.96360 0.98033 1.44145 1.02544 1.01224 1.85954 1.19379 0.97391 0.86756 1.36119 0.92522 1.25662 0.98447 1.01431 0.98537 1.70187 1.19276 1.27514 1.40958 0.85405 0.77571 0.79867 0.78008 1.20331 1.21205 1.20921 1.21131 0.95164 0.87297 0.94229 1.22090 0.95335 0.83824 1.00041 1.47959 1.05043 1.08621 1.71797 1.22299 0.98080 0.83722 1.03381 1.18597 0.82646 0.88636 0.76908 1.90851 1.68596 1.34169 1.50140 1.19466 0.97706 0.94065 0.99426 1.21402 1.01427 0.90315 0.99922 1.17569 0.96976 0.84220 0.93134 1.91559 1.91612 1.55181 1.72516 1.21634 0.95709 1.01231 0.93728 1.21203 0.99638 0.88887 0.99799 1.21269 0.96883 0.91377 0.95598 1.98437 1.91756 1.46219 1.66748 0.97241 0.96409 0.94457 0.94069 0.95672 0.91481 0.90105 0.93888 0.90225 0.89283 0.89639 0.81987 0.79696 0.80536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.69 9.01 127.77 1.15 9.85 16 2 N -0.62 -32.10 2.93 -726.94 -2.13 -34.23 16 3 C -0.27 -15.62 9.67 84.03 0.81 -14.81 16 4 H 0.06 3.40 7.85 -2.91 -0.02 3.37 16 5 C -0.05 -2.65 5.11 84.86 0.43 -2.21 16 6 N -0.93 -56.06 10.61 21.65 0.23 -55.83 16 7 Si 0.96 47.47 29.57 68.60 2.03 49.49 16 8 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 11 C 0.15 6.39 6.03 86.38 0.52 6.91 16 12 C 0.11 4.40 5.74 86.38 0.50 4.90 16 13 N -0.60 -18.37 2.87 -850.26 -2.44 -20.81 16 14 C 0.07 1.25 9.04 127.77 1.16 2.41 16 15 C 0.54 18.29 6.78 86.76 0.59 18.88 16 16 O -0.56 -24.52 15.34 -3.92 -0.06 -24.58 16 17 C -0.10 -2.52 4.93 -20.08 -0.10 -2.62 16 18 C -0.11 -1.96 7.74 22.57 0.17 -1.79 16 19 C 0.10 1.41 7.29 22.34 0.16 1.57 16 20 F -0.13 -1.87 17.26 44.97 0.78 -1.09 16 21 C -0.10 -1.08 10.02 22.36 0.22 -0.85 16 22 C -0.08 -1.04 9.82 22.25 0.22 -0.83 16 23 C -0.02 -0.53 6.34 22.60 0.14 -0.39 16 24 Cl -0.06 -1.72 27.13 -2.72 -0.07 -1.79 16 25 H 0.01 0.49 7.37 -2.39 -0.02 0.48 16 26 H 0.02 0.93 7.24 -2.39 -0.02 0.92 16 27 H 0.04 1.50 7.83 -2.39 -0.02 1.48 16 28 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.02 1.17 8.03 -2.39 -0.02 1.15 16 30 H 0.07 2.44 7.86 -2.39 -0.02 2.42 16 31 H 0.08 2.98 8.07 -2.38 -0.02 2.96 16 32 H 0.04 2.08 7.36 -2.39 -0.02 2.07 16 33 H 0.08 1.14 7.04 -2.38 -0.02 1.12 16 34 H 0.09 1.52 8.03 -2.38 -0.02 1.50 16 35 H 0.09 1.33 6.23 -2.39 -0.01 1.31 16 36 H 0.16 2.42 6.20 -2.91 -0.02 2.40 16 37 H 0.19 0.60 8.06 -2.91 -0.02 0.57 16 38 H 0.18 1.41 8.06 -2.92 -0.02 1.39 16 Total: -1.00 -75.08 338.11 5.40 -69.68 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: 1.08 Total: -1.87 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 5.98 Total: 21.02 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -4.34 Total: -110.87 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.06 Total: -24.58 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.78 Total: -1.09 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -75.08 5.40 -69.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698998783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.420 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds