Wall clock time and date at job start Tue Mar 31 2020 10:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99865 * 2 1 4 4 H 1.08000 * 119.99807 * 203.04633 * 3 2 1 5 5 C 1.38817 * 120.00200 * 23.04168 * 3 2 1 6 6 N 1.31621 * 119.99848 * 12.94059 * 5 3 2 7 7 Si 1.86797 * 120.00112 * 192.93934 * 5 3 2 8 8 H 1.48501 * 109.47177 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47201 * 119.99985 * 7 5 3 10 10 H 1.48511 * 109.46965 * 240.00171 * 7 5 3 11 11 C 1.46498 * 119.99998 * 179.97438 * 2 1 3 12 12 C 1.52992 * 109.47337 * 89.99936 * 11 2 1 13 13 C 1.53002 * 109.47431 * 180.02562 * 12 11 2 14 14 N 1.46499 * 109.47437 * 180.02562 * 13 12 11 15 15 C 1.34769 * 119.99889 * 179.97438 * 14 13 12 16 16 O 1.21551 * 120.00345 * 0.02562 * 15 14 13 17 17 C 1.47860 * 119.99905 * 179.97438 * 15 14 13 18 18 C 1.39576 * 120.12521 * 180.02562 * 17 15 14 19 19 C 1.38180 * 119.84840 * 179.97438 * 18 17 15 20 20 F 1.35097 * 119.94246 * 180.02562 * 19 18 17 21 21 C 1.38564 * 120.11044 * 359.97438 * 19 18 17 22 22 C 1.38420 * 120.25511 * 0.02562 * 21 19 18 23 23 Cl 1.73595 * 119.92456 * 179.97438 * 22 21 19 24 24 C 1.38114 * 120.14485 * 359.97438 * 22 21 19 25 25 H 1.08997 * 109.47200 * 275.12560 * 1 2 3 26 26 H 1.09005 * 109.47051 * 35.12494 * 1 2 3 27 27 H 1.09000 * 109.46652 * 155.12201 * 1 2 3 28 28 H 0.97000 * 120.00273 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.46699 * 329.99645 * 11 2 1 30 30 H 1.08997 * 109.47189 * 210.00593 * 11 2 1 31 31 H 1.09005 * 109.47073 * 59.99806 * 12 11 2 32 32 H 1.09004 * 109.47350 * 300.00118 * 12 11 2 33 33 H 1.09005 * 109.47207 * 59.99819 * 13 12 11 34 34 H 1.09004 * 109.46893 * 300.00328 * 13 12 11 35 35 H 0.97000 * 120.00036 * 359.97438 * 14 13 12 36 36 H 1.07996 * 120.07168 * 359.97438 * 18 17 15 37 37 H 1.07999 * 119.87462 * 179.72156 * 21 19 18 38 38 H 1.08001 * 120.05116 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3401 0.4705 6 7 0.4119 2.2598 1.1459 7 14 2.3157 4.0074 0.1452 8 1 3.5692 3.8265 -0.6303 9 1 1.3714 4.8507 -0.6309 10 1 2.6241 4.6705 1.4378 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7111 -1.4416 13 6 3.2170 -3.0364 -1.4411 14 7 3.4617 -3.4597 -2.8221 15 6 4.1243 -4.6072 -3.0677 16 8 4.5185 -5.2913 -2.1435 17 6 4.3708 -5.0347 -4.4616 18 6 5.0563 -6.2230 -4.7190 19 6 5.2830 -6.6173 -6.0238 20 9 5.9459 -7.7674 -6.2752 21 6 4.8308 -5.8357 -7.0748 22 6 4.1505 -4.6564 -6.8245 23 17 3.5883 -3.6835 -8.1477 24 6 3.9181 -4.2523 -5.5245 25 1 -0.3633 0.0918 1.0235 26 1 -0.3633 0.8406 -0.5913 27 1 -0.3632 -0.9323 -0.4323 28 1 -0.0153 3.0663 1.4744 29 1 1.6084 -2.0281 0.5148 30 1 3.1499 -1.1382 0.5144 31 1 3.0417 -0.9516 -1.9559 32 1 1.5001 -1.8416 -1.9555 33 1 2.6276 -3.7957 -0.9270 34 1 4.1694 -2.9063 -0.9271 35 1 3.1469 -2.9140 -3.5596 36 1 5.4086 -6.8328 -3.9003 37 1 5.0141 -6.1452 -8.0931 38 1 3.3868 -3.3321 -5.3310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752068804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:36 Heat of formation + Delta-G solvation = -44.578597 kcal Electronic energy + Delta-G solvation = -22411.235929 eV Core-core repulsion = 18615.687028 eV Total energy + Delta-G solvation = -3795.548902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.45093 -40.54435 -38.75677 -36.96025 -36.33449 -34.94164 -32.47080 -31.60435 -31.03344 -29.82411 -26.15763 -25.70574 -24.23833 -23.28123 -22.01533 -21.03018 -20.23586 -18.73552 -17.27177 -16.86923 -16.72498 -16.47523 -16.22078 -15.83773 -15.59504 -15.16685 -14.82770 -14.34663 -14.02404 -13.95706 -13.66011 -13.36736 -13.00683 -12.78824 -12.68141 -12.13899 -11.89805 -11.71049 -11.62817 -11.49028 -11.07642 -10.83856 -10.82912 -10.51561 -10.27902 -10.17487 -9.87855 -9.83292 -9.64456 -9.33210 -9.13692 -8.57158 -6.76622 -5.74046 -3.21449 0.07732 0.39967 1.43492 2.29400 2.86757 3.19181 3.35904 3.43227 3.45107 3.63682 4.05015 4.25531 4.45311 4.47823 4.49254 4.68804 5.04093 5.19376 5.31111 5.37306 5.40455 5.42243 5.52037 5.73958 5.83394 6.02328 6.03619 6.07375 6.35975 6.41185 6.70858 6.72130 6.89238 7.29675 7.35263 7.71621 7.79102 7.95144 8.38301 9.22088 9.85618 10.34494 11.30732 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.002437 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.207364 B =11487.214365 C =12461.241697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.152 4.152 13 C 0.119 3.881 14 N -0.716 5.716 15 C 0.555 3.445 16 O -0.530 6.530 17 C -0.087 4.087 18 C -0.092 4.092 19 C 0.109 3.891 20 F -0.127 7.127 21 C -0.126 4.126 22 C -0.015 4.015 23 Cl -0.046 7.046 24 C -0.089 4.089 25 H 0.031 0.969 26 H 0.040 0.960 27 H -0.002 1.002 28 H 0.252 0.748 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.007 -16.554 -17.938 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.193 4.193 13 C -0.004 4.004 14 N -0.367 5.367 15 C 0.341 3.659 16 O -0.408 6.408 17 C -0.090 4.090 18 C -0.112 4.112 19 C 0.089 3.911 20 F -0.106 7.106 21 C -0.146 4.146 22 C -0.042 4.042 23 Cl -0.017 7.017 24 C -0.108 4.108 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.125 -16.820 -17.274 25.141 hybrid contribution 0.219 1.167 -0.803 1.434 sum 7.345 -15.653 -18.078 25.015 Atomic orbital electron populations 1.20797 0.82648 0.95324 0.99519 1.43905 1.01862 1.00671 1.86123 1.19220 0.98264 0.85595 1.35443 0.91377 1.25044 0.97906 0.98596 0.98201 1.70080 1.19447 1.27094 1.38604 0.86196 0.78541 0.84334 0.77530 1.20315 1.21642 1.21706 1.20586 0.96431 0.88580 0.91697 1.22564 0.99503 0.94042 1.03178 1.21566 1.00807 0.97262 0.80772 1.46084 1.56996 1.23139 1.10474 1.17969 0.78742 0.81551 0.87652 1.90810 1.50994 1.53907 1.45069 1.19785 1.00245 0.95443 0.93557 1.21367 0.97363 0.96429 0.96063 1.17256 0.96669 0.84190 0.92943 1.91564 1.77967 1.46151 1.94885 1.21172 0.99178 0.93877 1.00342 1.20466 1.00507 0.93708 0.89487 1.98420 1.87646 1.69572 1.46076 1.21333 0.99118 1.00304 0.90084 0.95055 0.94147 0.98387 0.93792 0.94351 0.93210 0.91418 0.92105 0.91304 0.91161 0.76395 0.82516 0.83083 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.98 59.85 0.54 4.45 16 2 N -0.60 -14.79 2.92 -181.12 -0.53 -15.32 16 3 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 4 H 0.07 1.79 7.86 -52.49 -0.41 1.37 16 5 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 6 N -0.91 -26.32 10.71 55.49 0.59 -25.72 16 7 Si 0.90 21.56 29.57 -169.99 -5.03 16.54 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.16 3.01 5.64 -4.05 -0.02 2.98 16 12 C -0.15 -2.34 5.65 -26.73 -0.15 -2.49 16 13 C 0.12 1.58 5.67 -4.04 -0.02 1.55 16 14 N -0.72 -8.08 5.51 -61.24 -0.34 -8.42 16 15 C 0.56 6.81 7.77 -12.33 -0.10 6.71 16 16 O -0.53 -8.32 16.35 5.32 0.09 -8.24 16 17 C -0.09 -0.84 5.87 -104.98 -0.62 -1.45 16 18 C -0.09 -0.86 9.57 -39.10 -0.37 -1.23 16 19 C 0.11 0.91 7.29 -39.48 -0.29 0.62 16 20 F -0.13 -1.12 17.26 2.25 0.04 -1.08 16 21 C -0.13 -0.90 9.80 -39.39 -0.39 -1.29 16 22 C -0.01 -0.11 6.31 -39.56 -0.25 -0.36 16 23 Cl -0.05 -0.34 28.95 -51.86 -1.50 -1.84 16 24 C -0.09 -0.70 9.32 -39.14 -0.36 -1.07 16 25 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 26 H 0.04 1.04 7.34 -51.93 -0.38 0.66 16 27 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.58 6.51 -40.82 -0.27 3.32 16 36 H 0.16 1.46 7.65 -52.49 -0.40 1.06 16 37 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.15 0.92 6.40 -52.49 -0.34 0.59 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -31.14 345.41 -8.42 -39.56 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.68 Total: -2.02 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.27 Total: 1.33 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.27 Total: -49.46 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.14 -8.42 -39.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752068804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.019 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds