Wall clock time and date at job start Tue Mar 31 2020 10:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47426 * 2 1 4 4 C 1.53000 * 109.47590 * 239.99851 * 2 1 3 5 5 C 1.52998 * 109.47477 * 174.99815 * 4 2 1 6 6 N 1.46491 * 109.47165 * 179.97438 * 5 4 2 7 7 C 1.34779 * 120.00099 * 179.97438 * 6 5 4 8 8 O 1.21554 * 119.99630 * 0.02562 * 7 6 5 9 9 C 1.47855 * 120.00085 * 180.02562 * 7 6 5 10 10 C 1.39568 * 120.12908 * 359.97438 * 9 7 6 11 11 C 1.38169 * 119.85562 * 180.02562 * 10 9 7 12 12 F 1.35100 * 119.95078 * 179.97438 * 11 10 9 13 13 C 1.38576 * 120.10861 * 0.02562 * 11 10 9 14 14 C 1.38417 * 120.25214 * 359.96016 * 13 11 10 15 15 Cl 1.73597 * 119.92453 * 180.02562 * 14 13 11 16 16 C 1.38103 * 120.14508 * 0.04407 * 14 13 11 17 17 N 1.46503 * 109.46982 * 119.99621 * 2 1 3 18 18 C 1.36937 * 120.00391 * 275.00003 * 17 2 1 19 19 H 1.08000 * 119.99797 * 0.02562 * 18 17 2 20 20 C 1.38810 * 119.99895 * 179.97438 * 18 17 2 21 21 N 1.31614 * 120.00520 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46902 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46844 * 120.00095 * 22 20 18 25 25 H 1.48495 * 109.47371 * 240.00580 * 22 20 18 26 26 H 1.09000 * 109.46899 * 60.00549 * 1 2 3 27 27 H 1.09000 * 109.46940 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47599 * 299.99976 * 1 2 3 29 29 H 1.09001 * 109.46922 * 54.99847 * 4 2 1 30 30 H 1.09000 * 109.47035 * 295.00692 * 4 2 1 31 31 H 1.09007 * 109.46366 * 60.00271 * 5 4 2 32 32 H 1.08998 * 109.47201 * 300.00564 * 5 4 2 33 33 H 0.97003 * 120.00491 * 0.02562 * 6 5 4 34 34 H 1.08001 * 120.07214 * 359.97438 * 10 9 7 35 35 H 1.07992 * 119.87489 * 179.97438 * 13 11 10 36 36 H 1.08004 * 120.05538 * 180.25558 * 16 14 13 37 37 H 0.97004 * 119.99609 * 95.00590 * 17 2 1 38 38 H 0.96996 * 120.00647 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 7 4.0533 -1.3044 -2.5094 7 6 5.3742 -1.3398 -2.7750 8 8 6.1602 -0.7986 -2.0221 9 6 5.8670 -2.0368 -3.9822 10 6 4.9669 -2.6595 -4.8482 11 6 5.4338 -3.3098 -5.9744 12 9 4.5642 -3.9137 -6.8137 13 6 6.7926 -3.3445 -6.2439 14 6 7.6892 -2.7282 -5.3883 15 17 9.3897 -2.7764 -5.7345 16 6 7.2341 -2.0754 -4.2596 17 7 2.0183 -0.6905 1.1962 18 6 2.1491 -0.0074 2.3758 19 1 1.8918 1.0404 2.4244 20 6 2.6112 -0.6619 3.5093 21 7 2.9242 -1.9390 3.4503 22 14 2.7890 0.2698 5.1186 23 1 2.3741 1.6820 4.9213 24 1 1.9278 -0.3589 6.1522 25 1 4.2057 0.2270 5.5616 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6055 -0.2618 -2.1369 30 1 1.7516 -1.7715 -1.2056 31 1 3.9994 -1.0728 -0.4258 32 1 3.8532 0.4370 -1.3572 33 1 3.4260 -1.7359 -3.1104 34 1 3.9079 -2.6339 -4.6380 35 1 7.1534 -3.8542 -7.1250 36 1 7.9347 -1.5914 -3.5951 37 1 2.2490 -1.6317 1.1527 38 1 3.2475 -2.3962 4.2423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753014389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:23 Heat of formation + Delta-G solvation = -59.559314 kcal Electronic energy + Delta-G solvation = -22637.818306 eV Core-core repulsion = 18841.619792 eV Total energy + Delta-G solvation = -3796.198514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.41838 -40.42689 -38.65880 -36.90779 -36.60594 -34.57481 -32.45342 -31.71257 -30.92054 -29.26166 -28.11146 -24.93663 -23.79215 -23.28259 -22.36079 -20.87662 -19.86811 -18.67770 -17.30634 -17.17077 -16.74180 -16.35222 -16.17758 -15.66250 -15.45782 -15.19157 -14.80954 -14.06042 -13.96997 -13.85489 -13.60661 -13.50428 -13.01445 -12.57723 -12.45705 -12.25450 -12.06955 -11.76681 -11.57181 -11.52676 -11.14006 -10.95503 -10.78203 -10.66381 -10.33791 -10.09763 -9.87238 -9.65186 -9.56308 -9.25938 -8.99161 -8.89044 -6.96197 -5.75689 -3.04573 0.15120 0.48080 1.50210 2.40473 3.03296 3.31559 3.44954 3.50651 3.52769 3.62355 4.15468 4.32353 4.46758 4.53291 4.60530 4.84895 5.15169 5.23435 5.32913 5.34733 5.52075 5.55028 5.61207 5.66329 5.83605 6.02195 6.08111 6.14323 6.28197 6.34835 6.39426 6.57361 6.65734 6.83710 7.03740 7.43223 7.72168 8.11814 8.42527 9.54146 10.10205 10.44678 11.46964 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.002602 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.989745 B =10757.940450 C =11857.925570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.719 5.719 7 C 0.553 3.447 8 O -0.521 6.521 9 C -0.084 4.084 10 C -0.119 4.119 11 C 0.109 3.891 12 F -0.128 7.128 13 C -0.127 4.127 14 C -0.015 4.015 15 Cl -0.048 7.048 16 C -0.063 4.063 17 N -0.724 5.724 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.291 1.291 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.383 0.617 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -2.973 -23.637 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C -0.002 4.002 6 N -0.370 5.370 7 C 0.338 3.662 8 O -0.398 6.398 9 C -0.087 4.087 10 C -0.139 4.139 11 C 0.090 3.910 12 F -0.107 7.107 13 C -0.147 4.147 14 C -0.042 4.042 15 Cl -0.019 7.019 16 C -0.083 4.083 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.219 1.219 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.217 0.783 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.252 -2.458 -22.977 23.939 hybrid contribution -0.240 -0.307 0.416 0.570 sum 6.012 -2.765 -22.561 23.511 Atomic orbital electron populations 1.22426 0.99090 1.00855 1.00008 1.20146 0.91916 0.95591 0.85942 0.93218 1.22079 0.93667 1.01947 0.99528 1.21559 0.94629 0.97302 0.86671 1.46047 1.06669 1.56532 1.27722 1.17938 0.82951 0.80596 0.84723 1.90851 1.55212 1.45106 1.48594 1.19836 0.93222 0.99752 0.95922 1.21427 1.01312 0.97734 0.93420 1.17216 0.86746 0.97094 0.89963 1.91564 1.68441 1.80984 1.69676 1.21152 0.91039 1.01284 1.01223 1.20482 0.86207 1.01157 0.96384 1.98409 1.11551 1.97260 1.94663 1.21274 0.95297 0.96398 0.95281 1.42466 1.78098 1.10658 1.05374 1.19258 1.36467 0.93864 0.87293 0.91148 1.24726 1.02143 0.95952 0.98059 1.69656 1.50940 1.08670 1.28787 0.86152 0.77330 0.78804 0.84112 1.20578 1.21975 1.21860 0.94563 0.93514 0.92675 0.91823 0.91497 0.89287 0.91364 0.76921 0.83474 0.83145 0.82599 0.78293 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 2 C 0.17 3.22 2.89 -67.93 -0.20 3.02 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.91 4.87 -26.73 -0.13 -2.04 16 5 C 0.12 1.88 5.56 -4.05 -0.02 1.86 16 6 N -0.72 -8.94 5.51 -61.25 -0.34 -9.28 16 7 C 0.55 7.73 7.77 -12.32 -0.10 7.63 16 8 O -0.52 -9.53 16.35 5.32 0.09 -9.44 16 9 C -0.08 -0.90 5.87 -104.98 -0.62 -1.51 16 10 C -0.12 -1.01 9.52 -39.11 -0.37 -1.38 16 11 C 0.11 0.91 7.29 -39.48 -0.29 0.62 16 12 F -0.13 -1.10 17.26 2.25 0.04 -1.07 16 13 C -0.13 -0.98 9.80 -39.39 -0.39 -1.37 16 14 C -0.02 -0.13 6.31 -39.56 -0.25 -0.38 16 15 Cl -0.05 -0.40 28.95 -51.86 -1.50 -1.90 16 16 C -0.06 -0.65 9.37 -39.14 -0.37 -1.02 16 17 N -0.72 -17.31 4.57 -53.43 -0.24 -17.55 16 18 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 22 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.75 7.75 -51.93 -0.40 1.35 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.40 3.55 6.51 -40.82 -0.27 3.29 16 34 H 0.15 0.92 6.40 -52.49 -0.34 0.58 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.16 1.69 7.65 -52.48 -0.40 1.28 16 37 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -31.71 347.98 -8.28 -39.99 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.65 Total: 7.90 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.62 Total: -4.06 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.14 Total: -54.10 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.71 -8.28 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753014389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.570 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds