Wall clock time and date at job start Tue Mar 31 2020 10:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46719 * 2 1 4 4 C 1.36938 * 119.99874 * 275.30527 * 3 2 1 5 5 H 1.08001 * 120.00239 * 37.58394 * 4 3 2 6 6 C 1.38810 * 120.00056 * 217.58434 * 4 3 2 7 7 N 1.31623 * 120.00257 * 21.41918 * 6 4 3 8 8 Si 1.86803 * 120.00174 * 201.42610 * 6 4 3 9 9 H 1.48505 * 109.47015 * 59.99589 * 8 6 4 10 10 H 1.48496 * 109.47397 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46873 * 299.99942 * 8 6 4 12 12 C 1.46501 * 120.00261 * 95.31016 * 3 2 1 13 13 C 1.53003 * 109.47174 * 269.99854 * 12 3 2 14 14 N 1.46501 * 109.47174 * 179.97438 * 13 12 3 15 15 C 1.34771 * 119.99885 * 180.02562 * 14 13 12 16 16 O 1.21557 * 120.00141 * 0.26974 * 15 14 13 17 17 C 1.47773 * 120.00142 * 180.02562 * 15 14 13 18 18 C 1.39635 * 120.14025 * 359.71255 * 17 15 14 19 19 C 1.37903 * 119.91542 * 179.76739 * 18 17 15 20 20 C 1.38400 * 120.20479 * 0.54081 * 19 18 17 21 21 C 1.38463 * 120.29114 * 359.69208 * 20 19 18 22 22 F 1.35103 * 119.96123 * 180.02562 * 21 20 19 23 23 C 1.38378 * 120.08409 * 0.05012 * 21 20 19 24 24 Cl 1.73595 * 120.10804 * 179.97438 * 23 21 20 25 25 H 1.09003 * 109.47412 * 300.00347 * 1 2 3 26 26 H 1.08998 * 109.47167 * 59.99889 * 1 2 3 27 27 H 1.08997 * 109.46783 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47010 * 240.00209 * 2 1 3 29 29 H 1.08996 * 109.46780 * 119.99252 * 2 1 3 30 30 H 0.96996 * 119.99975 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47520 * 149.99330 * 12 3 2 32 32 H 1.09006 * 109.47061 * 29.99548 * 12 3 2 33 33 H 1.09004 * 109.47035 * 59.99589 * 13 12 3 34 34 H 1.08998 * 109.46878 * 300.00109 * 13 12 3 35 35 H 0.96998 * 119.99632 * 359.97438 * 14 13 12 36 36 H 1.08000 * 120.04354 * 0.02562 * 18 17 15 37 37 H 1.07995 * 119.89934 * 180.25296 * 19 18 17 38 38 H 1.08002 * 119.85297 * 179.71711 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9279 -1.9628 6 6 3.2111 2.9289 -1.3729 7 7 4.3026 2.7982 -0.6490 8 14 3.0994 4.2795 -2.6586 9 1 1.9627 5.1785 -2.3346 10 1 4.3618 5.0614 -2.6662 11 1 2.8845 3.6724 -3.9967 12 6 2.3731 2.0328 1.2633 13 6 1.1425 2.7384 1.8365 14 7 1.4971 3.3894 3.1001 15 6 0.5645 4.0759 3.7894 16 8 -0.5722 4.1508 3.3653 17 6 0.9223 4.7331 5.0637 18 6 2.2244 4.6397 5.5593 19 6 2.5545 5.2588 6.7465 20 6 1.5963 5.9633 7.4543 21 6 0.3014 6.0574 6.9732 22 9 -0.6286 6.7473 7.6693 23 6 -0.0417 5.4453 5.7805 24 17 -1.6652 5.5622 5.1771 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 5.0488 3.4033 -0.7830 31 1 3.1616 2.7642 1.0860 32 1 2.7254 1.2835 1.9722 33 1 0.3540 2.0069 2.0138 34 1 0.7902 3.4876 1.1276 35 1 2.4031 3.3257 3.4409 36 1 2.9731 4.0868 5.0115 37 1 3.5627 5.1898 7.1275 38 1 1.8599 6.4422 8.3857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753090043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:14 Heat of formation + Delta-G solvation = -51.970240 kcal Electronic energy + Delta-G solvation = -23450.149665 eV Core-core repulsion = 19654.280237 eV Total energy + Delta-G solvation = -3795.869427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -50.09021 -41.27397 -39.34753 -38.05989 -37.55264 -35.70022 -33.82845 -32.63822 -31.66884 -31.03256 -29.21683 -26.33903 -25.20615 -23.86942 -23.25346 -22.15397 -21.67107 -19.62703 -18.52183 -17.86711 -17.55647 -17.26865 -17.02030 -16.90181 -16.57135 -16.33786 -15.66213 -15.45149 -15.33097 -14.93707 -14.51125 -14.47452 -14.10753 -13.90978 -13.65386 -13.27043 -13.19695 -13.00019 -12.81313 -12.62088 -12.60207 -12.40395 -12.30754 -12.24320 -12.00909 -11.67671 -11.47723 -10.70844 -10.53693 -10.28794 -9.95254 -9.84537 -8.58811 -7.85803 -5.48081 -0.51573 -0.15001 0.96224 1.44688 1.48414 1.54303 1.69278 2.01596 2.50282 2.51546 2.97131 3.22056 3.44011 3.68533 3.75664 3.82559 4.08635 4.28835 4.33771 4.43737 4.48295 4.62094 4.76375 4.79169 4.83073 4.85348 4.99791 5.09229 5.11631 5.22918 5.29585 5.37792 5.56331 5.56888 5.67083 5.75432 6.44982 6.53707 7.14090 7.19281 7.83548 8.35373 9.10132 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.003415 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.234436 B = 8196.303807 C = 8564.923733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.597 5.597 4 C -0.275 4.275 5 H 0.050 0.950 6 C -0.023 4.023 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.288 1.288 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.145 3.855 13 C 0.121 3.879 14 N -0.702 5.702 15 C 0.541 3.459 16 O -0.559 6.559 17 C -0.118 4.118 18 C -0.078 4.078 19 C -0.075 4.075 20 C -0.103 4.103 21 C 0.083 3.917 22 F -0.133 7.133 23 C -0.053 4.053 24 Cl -0.044 7.044 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.029 0.971 35 H 0.412 0.588 36 H 0.167 0.833 37 H 0.193 0.807 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 4.104 19.470 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.318 5.318 4 C -0.405 4.405 5 H 0.067 0.933 6 C -0.221 4.221 7 N -0.550 5.550 8 Si 0.776 3.224 9 H -0.215 1.215 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.018 3.982 13 C -0.005 4.005 14 N -0.355 5.355 15 C 0.328 3.672 16 O -0.438 6.438 17 C -0.122 4.122 18 C -0.096 4.096 19 C -0.092 4.092 20 C -0.122 4.122 21 C 0.063 3.937 22 F -0.111 7.111 23 C -0.082 4.082 24 Cl -0.015 7.015 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.250 0.750 36 H 0.184 0.816 37 H 0.211 0.789 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.920 4.217 19.071 19.553 hybrid contribution -0.460 0.904 -0.925 1.373 sum -1.380 5.121 18.145 18.904 Atomic orbital electron populations 1.22227 0.98174 1.00805 1.00313 1.21006 0.93005 0.85442 0.99353 1.43840 1.76389 1.09614 1.02002 1.19123 1.04488 1.22041 0.94840 0.93266 1.25679 0.93974 1.02575 0.99874 1.70058 1.03430 1.37873 1.43687 0.85674 0.76575 0.80114 0.80074 1.21519 1.21160 1.20127 1.20940 0.94219 0.96850 0.86174 1.21982 1.00201 0.95333 0.83031 1.45811 1.13772 1.52581 1.23327 1.18508 0.85096 0.79109 0.84534 1.90843 1.21180 1.61476 1.70335 1.19664 0.95190 1.01669 0.95656 1.21818 0.93157 0.97826 0.96828 1.21609 1.01611 0.93482 0.92516 1.21817 0.88904 0.99093 1.02346 1.17575 0.88719 0.97120 0.90284 1.91533 1.65090 1.76876 1.77644 1.21320 0.88564 1.02488 0.95781 1.98417 1.18888 1.96603 1.87543 0.94083 0.94825 0.91288 0.94493 0.92786 0.93564 0.90628 0.93297 0.93215 0.95210 0.75040 0.81589 0.78938 0.79786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 10.21 71.98 0.73 -4.84 16 2 C 0.14 5.53 6.44 86.38 0.56 6.09 16 3 N -0.60 -28.47 2.43 -701.99 -1.71 -30.18 16 4 C -0.27 -14.73 9.45 84.03 0.79 -13.93 16 5 H 0.05 2.70 7.92 -2.91 -0.02 2.68 16 6 C -0.02 -1.20 4.95 84.86 0.42 -0.78 16 7 N -0.91 -49.42 11.47 21.65 0.25 -49.17 16 8 Si 0.95 43.79 29.60 68.60 2.03 45.82 16 9 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 6.19 5.45 86.38 0.47 6.67 16 13 C 0.12 4.82 6.00 86.38 0.52 5.33 16 14 N -0.70 -22.30 5.51 -466.05 -2.57 -24.86 16 15 C 0.54 18.22 7.76 86.77 0.67 18.89 16 16 O -0.56 -23.41 13.97 -3.89 -0.05 -23.46 16 17 C -0.12 -3.02 5.88 -20.08 -0.12 -3.14 16 18 C -0.08 -1.21 9.54 22.53 0.21 -1.00 16 19 C -0.07 -0.70 10.03 22.23 0.22 -0.48 16 20 C -0.10 -1.22 10.02 22.36 0.22 -0.99 16 21 C 0.08 1.73 7.27 22.36 0.16 1.89 16 22 F -0.13 -2.99 16.83 44.97 0.76 -2.24 16 23 C -0.05 -1.42 6.36 22.65 0.14 -1.27 16 24 Cl -0.04 -1.41 25.68 -2.72 -0.07 -1.48 16 25 H 0.04 1.49 6.64 -2.39 -0.02 1.47 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 29 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 30 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 31 H 0.08 3.63 5.52 -2.39 -0.01 3.62 16 32 H 0.05 1.87 7.86 -2.38 -0.02 1.85 16 33 H 0.05 2.03 6.64 -2.38 -0.02 2.02 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.41 10.08 6.50 -92.71 -0.60 9.48 16 36 H 0.17 1.83 6.40 -2.91 -0.02 1.81 16 37 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 38 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -69.53 338.42 4.15 -65.37 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.50 Total: 7.77 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.02 Total: 12.43 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -4.03 Total: -104.21 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.76 Total: -2.24 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.07 Total: -1.48 kcal Total: -69.53 4.15 -65.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753090043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.404 kcal (2) G-P(sol) polarization free energy of solvation -69.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds