Wall clock time and date at job start Tue Mar 31 2020 10:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.52996 * 109.46775 * 240.00268 * 2 1 3 5 5 N 1.46505 * 109.47228 * 184.99699 * 4 2 1 6 6 C 1.36936 * 120.00321 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99992 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99890 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99894 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47254 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46952 * 119.99883 * 10 8 6 13 13 H 1.48505 * 109.46873 * 239.99381 * 10 8 6 14 14 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 15 15 C 1.34784 * 119.99864 * 274.99655 * 14 2 1 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 2 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 2 18 18 C 1.50698 * 109.47166 * 179.97438 * 17 15 14 19 19 C 1.38267 * 119.97980 * 269.72535 * 18 17 15 20 20 C 1.38211 * 120.06125 * 179.76301 * 19 18 17 21 21 C 1.38313 * 120.01541 * 0.51148 * 20 19 18 22 22 Cl 1.73609 * 120.02737 * 179.72184 * 21 20 19 23 23 C 1.38552 * 119.95165 * 359.74595 * 21 20 19 24 24 F 1.35103 * 120.03120 * 180.02562 * 23 21 20 25 25 C 1.38200 * 119.97506 * 89.99855 * 18 17 15 26 26 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 27 27 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 28 28 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47503 * 304.99684 * 4 2 1 30 30 H 1.08996 * 109.47582 * 64.99722 * 4 2 1 31 31 H 0.97005 * 119.99677 * 0.02562 * 5 4 2 32 32 H 0.97008 * 119.99857 * 180.02562 * 9 8 6 33 33 H 0.97000 * 120.00740 * 94.72347 * 14 2 1 34 34 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 35 35 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 36 36 H 1.07996 * 119.96312 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.99110 * 180.22834 * 20 19 18 38 38 H 1.08000 * 120.00678 * 359.96039 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1837 -1.4387 -2.2069 7 1 3.6466 -1.8439 -3.0518 8 6 5.5671 -1.5388 -2.1511 9 7 6.2215 -1.0454 -1.1213 10 14 6.4998 -2.3736 -3.5377 11 1 5.5394 -2.8400 -4.5698 12 1 7.4507 -1.4086 -4.1458 13 1 7.2508 -3.5361 -2.9994 14 7 2.0183 -0.6907 1.1961 15 6 2.1471 -0.0183 2.3571 16 8 1.8634 1.1597 2.4103 17 6 2.6435 -0.7302 3.5890 18 6 2.6961 0.2385 4.7422 19 6 3.8490 0.9625 4.9843 20 6 3.8974 1.8550 6.0384 21 6 2.7958 2.0172 6.8589 22 17 2.8588 3.1329 8.1875 23 6 1.6421 1.2881 6.6201 24 9 0.5649 1.4456 7.4202 25 6 1.5939 0.3985 5.5604 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7197 -1.2952 30 1 1.7515 -0.1583 -2.1370 31 1 3.9824 -0.4627 -0.4317 32 1 7.1883 -1.1150 -1.0825 33 1 2.2452 -1.6328 1.1536 34 1 1.9670 -1.5493 3.8328 35 1 3.6416 -1.1266 3.4022 36 1 4.7109 0.8335 4.3465 37 1 4.7973 2.4227 6.2243 38 1 0.6950 -0.1700 5.3729 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754246450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:09 Heat of formation + Delta-G solvation = -61.055914 kcal Electronic energy + Delta-G solvation = -23032.424906 eV Core-core repulsion = 19236.161494 eV Total energy + Delta-G solvation = -3796.263412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.11296 -40.08388 -38.89298 -36.81630 -36.16069 -33.68363 -32.89280 -31.34624 -30.87425 -30.00380 -27.60045 -25.71663 -23.25595 -22.90694 -22.33644 -20.80856 -20.10151 -17.75274 -17.28956 -16.92450 -16.84550 -16.59442 -15.90618 -15.80522 -15.03475 -14.74271 -14.27744 -13.99670 -13.81300 -13.76670 -13.41171 -13.33542 -13.06509 -12.54606 -12.44254 -12.26460 -12.22091 -11.78656 -11.72962 -11.55475 -11.51449 -11.12551 -10.96008 -10.88841 -10.50114 -10.07782 -9.80836 -9.70019 -9.16099 -8.98524 -8.76459 -8.74599 -7.02332 -5.84804 -3.14309 0.74012 0.91426 1.80060 2.85253 3.11432 3.37740 3.44027 3.45963 3.58986 3.86500 4.33007 4.48742 4.51878 4.85962 4.96049 4.98510 5.16208 5.26184 5.30443 5.45951 5.48376 5.52130 5.60251 5.63415 5.75861 5.86012 5.97439 6.04975 6.13830 6.21540 6.34810 6.42968 6.49776 6.65064 6.89510 7.62937 7.79921 8.33359 8.47597 9.45529 10.00926 10.36542 11.37627 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002760 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.144618 B =10142.500307 C =11181.650718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.242 4.242 7 H 0.071 0.929 8 C -0.012 4.012 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 N -0.710 5.710 15 C 0.517 3.483 16 O -0.541 6.541 17 C -0.109 4.109 18 C -0.023 4.023 19 C -0.100 4.100 20 C -0.080 4.080 21 C -0.077 4.077 22 Cl -0.057 7.057 23 C 0.108 3.892 24 F -0.130 7.130 25 C -0.130 4.130 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.386 0.614 32 H 0.255 0.745 33 H 0.405 0.595 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 1.579 15.902 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.373 4.373 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.579 5.579 10 Si 0.738 3.262 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 N -0.361 5.361 15 C 0.302 3.698 16 O -0.419 6.419 17 C -0.149 4.149 18 C -0.024 4.024 19 C -0.118 4.118 20 C -0.099 4.099 21 C -0.104 4.104 22 Cl -0.029 7.029 23 C 0.088 3.912 24 F -0.108 7.108 25 C -0.149 4.149 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.239 0.761 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.158 2.450 15.910 18.520 hybrid contribution 0.694 -0.631 -0.348 1.001 sum -8.463 1.819 15.562 17.808 Atomic orbital electron populations 1.22102 0.95546 1.01820 1.02151 1.21235 0.93287 0.98021 0.84562 0.89538 1.20986 0.86854 0.96971 0.93614 1.42359 0.99734 1.70292 1.25278 1.19264 0.89444 1.29378 0.99235 0.91091 1.24746 0.96435 1.01546 0.98107 1.69671 1.07191 1.50857 1.30225 0.86118 0.79901 0.78733 0.81409 1.20564 1.21842 1.21851 1.45975 1.66543 1.14367 1.09207 1.20262 0.77807 0.87352 0.84376 1.90715 1.50266 1.15710 1.85159 1.20757 1.05340 0.97699 0.91104 1.19256 0.92794 0.96108 0.94253 1.21153 0.98663 0.95159 0.96860 1.20946 0.97083 0.98117 0.93719 1.20970 0.95844 0.98302 0.95332 1.98377 1.98551 1.60594 1.45340 1.17295 0.83304 0.98619 0.91990 1.91528 1.52907 1.94513 1.71879 1.20932 1.00059 0.99453 0.94411 0.92488 0.91673 0.92586 0.95765 0.94892 0.78021 0.93533 0.76058 0.87574 0.86697 0.83952 0.83854 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 37.16 0.35 -1.69 16 2 C 0.13 2.12 2.74 -67.94 -0.19 1.93 16 3 H 0.09 1.58 7.57 -51.93 -0.39 1.19 16 4 C 0.14 2.66 5.82 -4.04 -0.02 2.64 16 5 N -0.73 -17.36 5.43 -59.91 -0.33 -17.69 16 6 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 10 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 N -0.71 -10.23 4.52 -53.81 -0.24 -10.47 16 15 C 0.52 7.47 7.79 -10.98 -0.09 7.39 16 16 O -0.54 -9.79 15.69 5.56 0.09 -9.70 16 17 C -0.11 -1.14 5.83 -29.04 -0.17 -1.31 16 18 C -0.02 -0.27 4.37 -104.63 -0.46 -0.72 16 19 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 20 C -0.08 -0.85 9.83 -39.56 -0.39 -1.24 16 21 C -0.08 -0.90 6.33 -39.44 -0.25 -1.15 16 22 Cl -0.06 -0.63 28.62 -51.86 -1.48 -2.11 16 23 C 0.11 1.31 7.28 -39.39 -0.29 1.02 16 24 F -0.13 -1.63 16.84 2.25 0.04 -1.59 16 25 C -0.13 -1.46 9.68 -39.52 -0.38 -1.84 16 26 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.39 9.71 7.33 -40.82 -0.30 9.41 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.40 5.37 8.61 -40.82 -0.35 5.02 16 34 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -31.63 350.07 -8.27 -39.90 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.81 Total: 9.53 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.51 Total: -3.52 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.16 Total: -54.42 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.63 -8.27 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754246450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.157 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds