Wall clock time and date at job start Tue Mar 31 2020 10:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.52996 * 109.46775 * 240.00268 * 2 1 3 5 5 N 1.46505 * 109.47228 * 184.99699 * 4 2 1 6 6 C 1.36936 * 120.00321 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99992 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99890 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99894 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47254 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46952 * 119.99883 * 10 8 6 13 13 H 1.48505 * 109.46873 * 239.99381 * 10 8 6 14 14 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 15 15 C 1.34784 * 119.99864 * 274.99655 * 14 2 1 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 2 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 2 18 18 C 1.50698 * 109.47166 * 179.97438 * 17 15 14 19 19 C 1.38267 * 119.97980 * 269.72535 * 18 17 15 20 20 C 1.38211 * 120.06125 * 179.76301 * 19 18 17 21 21 C 1.38313 * 120.01541 * 0.51148 * 20 19 18 22 22 Cl 1.73609 * 120.02737 * 179.72184 * 21 20 19 23 23 C 1.38552 * 119.95165 * 359.74595 * 21 20 19 24 24 F 1.35103 * 120.03120 * 180.02562 * 23 21 20 25 25 C 1.38200 * 119.97506 * 89.99855 * 18 17 15 26 26 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 27 27 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 28 28 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47503 * 304.99684 * 4 2 1 30 30 H 1.08996 * 109.47582 * 64.99722 * 4 2 1 31 31 H 0.97005 * 119.99677 * 0.02562 * 5 4 2 32 32 H 0.97008 * 119.99857 * 180.02562 * 9 8 6 33 33 H 0.97000 * 120.00740 * 94.72347 * 14 2 1 34 34 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 35 35 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 36 36 H 1.07996 * 119.96312 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.99110 * 180.22834 * 20 19 18 38 38 H 1.08000 * 120.00678 * 359.96039 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1837 -1.4387 -2.2069 7 1 3.6466 -1.8439 -3.0518 8 6 5.5671 -1.5388 -2.1511 9 7 6.2215 -1.0454 -1.1213 10 14 6.4998 -2.3736 -3.5377 11 1 5.5394 -2.8400 -4.5698 12 1 7.4507 -1.4086 -4.1458 13 1 7.2508 -3.5361 -2.9994 14 7 2.0183 -0.6907 1.1961 15 6 2.1471 -0.0183 2.3571 16 8 1.8634 1.1597 2.4103 17 6 2.6435 -0.7302 3.5890 18 6 2.6961 0.2385 4.7422 19 6 3.8490 0.9625 4.9843 20 6 3.8974 1.8550 6.0384 21 6 2.7958 2.0172 6.8589 22 17 2.8588 3.1329 8.1875 23 6 1.6421 1.2881 6.6201 24 9 0.5649 1.4456 7.4202 25 6 1.5939 0.3985 5.5604 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -1.7197 -1.2952 30 1 1.7515 -0.1583 -2.1370 31 1 3.9824 -0.4627 -0.4317 32 1 7.1883 -1.1150 -1.0825 33 1 2.2452 -1.6328 1.1536 34 1 1.9670 -1.5493 3.8328 35 1 3.6416 -1.1266 3.4022 36 1 4.7109 0.8335 4.3465 37 1 4.7973 2.4227 6.2243 38 1 0.6950 -0.1700 5.3729 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754246450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:08 Heat of formation + Delta-G solvation = -80.245316 kcal Electronic energy + Delta-G solvation = -23033.257021 eV Core-core repulsion = 19236.161494 eV Total energy + Delta-G solvation = -3797.095527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.04229 -41.13222 -39.89650 -37.79717 -37.48151 -35.40772 -33.86195 -32.89829 -31.77804 -31.44350 -28.51446 -27.38320 -24.56977 -24.08732 -23.48668 -22.01751 -21.27592 -19.22888 -18.58816 -18.05938 -17.80419 -17.49665 -17.10718 -16.82614 -16.59225 -16.05846 -15.38460 -15.26138 -15.16082 -14.95444 -14.71743 -14.41583 -14.00215 -13.89088 -13.62643 -13.61384 -13.25878 -13.08402 -12.80390 -12.69976 -12.60767 -12.47695 -12.38701 -12.08557 -11.98085 -11.87142 -11.66746 -11.00297 -10.84126 -10.02273 -9.97022 -9.66018 -8.98100 -7.92580 -5.21201 -0.14484 0.05879 0.92707 1.50041 1.51454 1.60445 1.73481 2.15395 2.55994 2.59860 2.98855 3.42138 3.48416 3.65013 3.80295 4.01095 4.03504 4.12707 4.15149 4.34180 4.40752 4.49751 4.56551 4.70512 4.78723 4.83877 4.90375 4.91379 4.97570 5.01340 5.16377 5.33753 5.36891 5.53850 5.64599 5.65585 6.29018 6.66862 7.35210 7.36815 8.10103 8.34365 9.30428 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002760 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.144618 B =10142.500307 C =11181.650718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.141 3.859 3 H 0.056 0.944 4 C 0.145 3.855 5 N -0.742 5.742 6 C -0.242 4.242 7 H 0.077 0.923 8 C -0.072 4.072 9 N -0.965 5.965 10 Si 0.969 3.031 11 H -0.267 1.267 12 H -0.299 1.299 13 H -0.292 1.292 14 N -0.707 5.707 15 C 0.514 3.486 16 O -0.582 6.582 17 C -0.100 4.100 18 C -0.032 4.032 19 C -0.108 4.108 20 C -0.081 4.081 21 C -0.086 4.086 22 Cl -0.055 7.055 23 C 0.092 3.908 24 F -0.136 7.136 25 C -0.130 4.130 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.376 0.624 32 H 0.250 0.750 33 H 0.412 0.588 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 0.353 15.594 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 H 0.075 0.925 4 C 0.018 3.982 5 N -0.386 5.386 6 C -0.374 4.374 7 H 0.095 0.905 8 C -0.264 4.264 9 N -0.616 5.616 10 Si 0.799 3.201 11 H -0.191 1.191 12 H -0.226 1.226 13 H -0.220 1.220 14 N -0.358 5.358 15 C 0.301 3.699 16 O -0.462 6.462 17 C -0.139 4.139 18 C -0.033 4.033 19 C -0.127 4.127 20 C -0.099 4.099 21 C -0.114 4.114 22 Cl -0.026 7.026 23 C 0.072 3.928 24 F -0.114 7.114 25 C -0.149 4.149 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.208 0.792 32 H 0.059 0.941 33 H 0.248 0.752 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.167 0.833 37 H 0.179 0.821 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.918 1.196 15.587 18.514 hybrid contribution 0.862 -0.212 -0.264 0.926 sum -9.057 0.984 15.323 17.826 Atomic orbital electron populations 1.22000 0.92926 1.03117 1.02436 1.21025 0.95127 0.96069 0.84174 0.92529 1.21127 0.84083 0.98032 0.94954 1.42522 1.01809 1.69918 1.24330 1.19640 0.89855 1.28231 0.99681 0.90507 1.25490 0.97488 1.03049 1.00396 1.69811 1.06968 1.52718 1.32058 0.85132 0.78510 0.77361 0.79067 1.19146 1.22638 1.21966 1.45951 1.66384 1.14628 1.08879 1.20912 0.76823 0.86952 0.85195 1.90699 1.52069 1.17570 1.85831 1.20778 1.06618 0.97890 0.88654 1.19413 0.92900 0.96462 0.94549 1.21375 0.99071 0.95171 0.97051 1.21168 0.97494 0.98018 0.93270 1.21136 0.96114 0.98468 0.95675 1.98373 1.98551 1.60489 1.45225 1.17507 0.83404 0.99405 0.92531 1.91507 1.53184 1.94636 1.72110 1.21136 1.00652 0.99219 0.93899 0.92986 0.90632 0.90711 0.94039 0.94875 0.79200 0.94102 0.75212 0.84149 0.85535 0.83286 0.82061 0.82330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.48 71.98 0.68 -2.82 16 2 C 0.14 4.34 2.74 44.99 0.12 4.47 16 3 H 0.06 2.09 7.57 -2.39 -0.02 2.08 16 4 C 0.14 5.16 5.82 86.38 0.50 5.66 16 5 N -0.74 -34.77 5.43 -343.46 -1.87 -36.63 16 6 C -0.24 -12.69 9.99 84.03 0.84 -11.85 16 7 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 8 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 9 N -0.96 -56.17 13.06 21.65 0.28 -55.88 16 10 Si 0.97 44.19 29.55 68.60 2.03 46.22 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 14 N -0.71 -19.48 4.52 -442.55 -2.00 -21.48 16 15 C 0.51 14.32 7.79 87.65 0.68 15.00 16 16 O -0.58 -20.93 15.69 -3.04 -0.05 -20.98 16 17 C -0.10 -1.90 5.83 29.10 0.17 -1.73 16 18 C -0.03 -0.70 4.37 -19.87 -0.09 -0.78 16 19 C -0.11 -2.32 9.70 22.27 0.22 -2.11 16 20 C -0.08 -1.67 9.83 22.28 0.22 -1.45 16 21 C -0.09 -1.97 6.33 22.36 0.14 -1.83 16 22 Cl -0.06 -1.18 28.62 -2.72 -0.08 -1.26 16 23 C 0.09 2.16 7.28 22.39 0.16 2.33 16 24 F -0.14 -3.35 16.84 44.97 0.76 -2.59 16 25 C -0.13 -2.77 9.68 22.31 0.22 -2.56 16 26 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.38 18.96 7.33 -92.70 -0.68 18.28 16 32 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 33 H 0.41 10.18 8.61 -92.71 -0.80 9.38 16 34 H 0.14 1.69 8.09 -2.39 -0.02 1.67 16 35 H 0.13 2.16 8.08 -2.39 -0.02 2.14 16 36 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 37 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -67.31 350.07 3.04 -64.27 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.37 Total: 29.46 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.34 Total: -1.12 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.58 Total: -114.00 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.76 Total: -2.59 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -67.31 3.04 -64.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754246450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.973 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds