Wall clock time and date at job start Tue Mar 31 2020 10:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99958 * 2 1 4 4 C 1.52993 * 109.47478 * 89.99603 * 3 2 1 5 5 C 1.53001 * 109.47404 * 179.97438 * 4 3 2 6 6 N 1.46495 * 109.47141 * 180.02562 * 5 4 3 7 7 C 1.36947 * 119.99767 * 180.02562 * 6 5 4 8 8 H 1.07990 * 119.99722 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99524 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00435 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99659 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46861 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47112 * 120.00121 * 11 9 7 14 14 H 1.48500 * 109.46859 * 240.00121 * 11 9 7 15 15 C 1.34774 * 120.00112 * 179.97438 * 2 1 3 16 16 O 1.21567 * 120.00270 * 186.97771 * 15 2 1 17 17 C 1.47727 * 119.99826 * 6.98697 * 15 2 1 18 18 C 1.39661 * 120.11116 * 200.59749 * 17 15 2 19 19 C 1.37838 * 119.90573 * 180.02562 * 18 17 15 20 20 C 1.38638 * 120.12849 * 0.02562 * 19 18 17 21 21 F 1.35107 * 119.88664 * 179.97438 * 20 19 18 22 22 C 1.38739 * 120.23413 * 0.02562 * 20 19 18 23 23 Cl 1.73598 * 119.95582 * 179.97438 * 22 20 19 24 24 C 1.37969 * 120.09154 * 359.67621 * 22 20 19 25 25 H 1.09004 * 109.46955 * 86.34679 * 1 2 3 26 26 H 1.08998 * 109.47298 * 206.35130 * 1 2 3 27 27 H 1.08998 * 109.47326 * 326.34915 * 1 2 3 28 28 H 1.09002 * 109.47087 * 329.99422 * 3 2 1 29 29 H 1.09005 * 109.47108 * 209.99886 * 3 2 1 30 30 H 1.08995 * 109.47202 * 300.00175 * 4 3 2 31 31 H 1.09002 * 109.47109 * 59.99832 * 4 3 2 32 32 H 1.08995 * 109.47226 * 300.00334 * 5 4 3 33 33 H 1.09002 * 109.46982 * 59.99929 * 5 4 3 34 34 H 0.97000 * 120.00537 * 0.02562 * 6 5 4 35 35 H 0.96999 * 120.00011 * 179.97438 * 10 9 7 36 36 H 1.08003 * 120.04893 * 0.02562 * 18 17 15 37 37 H 1.07996 * 119.93556 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.07036 * 180.32063 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 1.4424 5 6 3.2180 3.0353 1.4424 6 7 3.4626 3.4579 2.8235 7 6 4.1359 4.6239 3.0737 8 1 4.4861 5.2319 2.2528 9 6 4.3672 5.0246 4.3824 10 7 3.9390 4.2843 5.3828 11 14 5.2849 6.6155 4.7237 12 1 5.6553 7.2589 3.4376 13 1 4.4140 7.5321 5.5025 14 1 6.5145 6.3203 5.5023 15 6 2.1388 -1.1672 0.0005 16 8 3.3478 -1.1710 0.1284 17 6 1.4084 -2.4418 -0.1545 18 6 1.9930 -3.6396 0.2628 19 6 1.3079 -4.8266 0.1157 20 6 0.0404 -4.8334 -0.4461 21 9 -0.6265 -5.9998 -0.5886 22 6 -0.5451 -3.6470 -0.8636 23 17 -2.1322 -3.6641 -1.5668 24 6 0.1297 -2.4528 -0.7152 25 1 -0.3633 0.0655 -1.0256 26 1 -0.3634 -0.9209 0.4561 27 1 -0.3634 0.8554 0.5694 28 1 1.6084 2.0284 -0.5139 29 1 3.1499 1.1384 -0.5138 30 1 1.5000 1.8409 1.9562 31 1 3.0415 0.9509 1.9563 32 1 4.1703 2.9045 0.9287 33 1 2.6293 3.7951 0.9283 34 1 3.1477 2.9120 3.5609 35 1 4.1010 4.5642 6.2973 36 1 2.9804 -3.6358 0.7003 37 1 1.7596 -5.7531 0.4379 38 1 -0.3285 -1.5288 -1.0355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754398720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:34 Heat of formation + Delta-G solvation = -27.272749 kcal Electronic energy + Delta-G solvation = -22750.804505 eV Core-core repulsion = 18956.006041 eV Total energy + Delta-G solvation = -3794.798464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.49786 -40.85009 -38.72908 -37.01965 -36.35735 -34.98888 -32.72768 -31.51833 -31.12858 -29.57593 -27.44028 -25.72810 -23.79758 -23.63299 -22.50656 -20.99089 -20.08722 -18.23262 -17.91919 -17.22315 -17.05197 -16.33259 -16.06344 -15.64922 -15.51811 -14.91507 -14.60759 -14.49180 -14.19317 -13.85939 -13.60191 -13.39053 -13.24585 -13.19306 -12.99134 -12.45914 -12.09112 -11.99604 -11.84760 -11.70128 -11.39510 -10.94457 -10.86031 -10.75406 -10.42928 -10.12733 -9.99559 -9.71768 -9.55579 -9.25510 -8.85740 -8.81360 -6.89967 -5.74428 -3.03188 0.10832 0.46268 1.45057 2.31255 2.70847 3.17315 3.44856 3.46306 3.50137 3.52696 3.95689 4.10065 4.45015 4.51654 4.61152 4.76312 4.88465 4.97371 5.08413 5.22181 5.23479 5.32285 5.41733 5.49345 5.57589 5.63285 5.65449 5.86215 6.02679 6.05196 6.28427 6.38281 6.42654 6.86064 6.87771 7.13589 7.72308 7.91628 8.44539 9.55449 10.13972 10.48360 11.48737 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.029518 B = 0.002235 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.347591 B =12523.484938 C =12860.886164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.607 5.607 3 C 0.120 3.880 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C 0.557 3.443 16 O -0.520 6.520 17 C -0.128 4.128 18 C -0.026 4.026 19 C -0.149 4.149 20 C 0.131 3.869 21 F -0.123 7.123 22 C -0.086 4.086 23 Cl -0.044 7.044 24 C -0.074 4.074 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.960 -19.694 -15.683 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.339 5.339 3 C -0.002 4.002 4 C -0.179 4.179 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.345 3.655 16 O -0.397 6.397 17 C -0.132 4.132 18 C -0.045 4.045 19 C -0.168 4.168 20 C 0.111 3.889 21 F -0.101 7.101 22 C -0.114 4.114 23 Cl -0.015 7.015 24 C -0.092 4.092 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.397 -19.555 -15.725 27.988 hybrid contribution -0.049 0.440 0.486 0.657 sum -12.446 -19.115 -15.239 27.432 Atomic orbital electron populations 1.22471 0.79965 1.04340 1.01548 1.47760 1.06897 1.06327 1.72956 1.21573 0.97379 0.82902 0.98340 1.22063 1.01211 0.99117 0.95508 1.20537 0.96039 0.91824 0.88762 1.42363 1.68338 1.25985 1.01099 1.19292 1.27710 0.98087 0.91824 0.91081 1.24760 1.01768 0.99084 0.95576 1.69674 1.51587 1.38910 0.98134 0.86101 0.79179 0.83076 0.77761 1.20532 1.21882 1.21845 1.18062 0.87044 0.83142 0.77278 1.90845 1.13535 1.86737 1.48575 1.20010 0.94641 0.94821 1.03719 1.21300 0.99956 0.89656 0.93599 1.21153 0.92956 1.00488 1.02224 1.17702 0.91354 0.80573 0.99303 1.91569 1.79874 1.45457 1.93200 1.20888 0.90587 0.93952 1.05950 1.98406 1.22011 1.98822 1.82289 1.22196 0.93190 0.97960 0.95887 0.91698 0.89870 0.90057 0.90088 0.89565 0.91924 0.91342 0.96178 0.96394 0.78315 0.93578 0.82846 0.82908 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 8.65 59.84 0.52 0.95 16 2 N -0.61 -6.75 2.87 -182.74 -0.53 -7.28 16 3 C 0.12 1.53 5.37 -4.04 -0.02 1.51 16 4 C -0.14 -2.30 5.65 -26.73 -0.15 -2.46 16 5 C 0.16 3.19 6.26 -4.04 -0.03 3.17 16 6 N -0.73 -19.23 5.60 -59.91 -0.34 -19.57 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 11 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 15 C 0.56 7.04 7.51 -12.38 -0.09 6.95 16 16 O -0.52 -8.58 16.19 5.31 0.09 -8.49 16 17 C -0.13 -1.25 5.57 -104.97 -0.58 -1.83 16 18 C -0.03 -0.23 9.58 -39.20 -0.38 -0.60 16 19 C -0.15 -1.09 10.01 -39.58 -0.40 -1.49 16 20 C 0.13 1.09 7.28 -39.25 -0.29 0.81 16 21 F -0.12 -1.10 16.83 2.25 0.04 -1.06 16 22 C -0.09 -0.71 6.32 -39.49 -0.25 -0.95 16 23 Cl -0.04 -0.35 28.60 -51.86 -1.48 -1.83 16 24 C -0.07 -0.58 7.39 -39.16 -0.29 -0.87 16 25 H 0.06 0.33 7.00 -51.93 -0.36 -0.04 16 26 H 0.08 0.54 5.25 -51.93 -0.27 0.27 16 27 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.09 1.19 7.53 -51.93 -0.39 0.80 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 35 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 36 H 0.15 1.30 7.79 -52.48 -0.41 0.89 16 37 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.17 1.04 4.03 -52.49 -0.21 0.83 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -33.94 341.31 -8.04 -41.98 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.46 Total: 3.89 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.20 Total: -2.37 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.14 Total: -54.96 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.48 Total: -1.83 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.94 -8.04 -41.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754398720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.709 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds