Wall clock time and date at job start Tue Mar 31 2020 10:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99958 * 2 1 4 4 C 1.52993 * 109.47478 * 89.99603 * 3 2 1 5 5 C 1.53001 * 109.47404 * 179.97438 * 4 3 2 6 6 N 1.46495 * 109.47141 * 180.02562 * 5 4 3 7 7 C 1.36947 * 119.99767 * 180.02562 * 6 5 4 8 8 H 1.07990 * 119.99722 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99524 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00435 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99659 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46861 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47112 * 120.00121 * 11 9 7 14 14 H 1.48500 * 109.46859 * 240.00121 * 11 9 7 15 15 C 1.34774 * 120.00112 * 179.97438 * 2 1 3 16 16 O 1.21567 * 120.00270 * 186.97771 * 15 2 1 17 17 C 1.47727 * 119.99826 * 6.98697 * 15 2 1 18 18 C 1.39661 * 120.11116 * 200.59749 * 17 15 2 19 19 C 1.37838 * 119.90573 * 180.02562 * 18 17 15 20 20 C 1.38638 * 120.12849 * 0.02562 * 19 18 17 21 21 F 1.35107 * 119.88664 * 179.97438 * 20 19 18 22 22 C 1.38739 * 120.23413 * 0.02562 * 20 19 18 23 23 Cl 1.73598 * 119.95582 * 179.97438 * 22 20 19 24 24 C 1.37969 * 120.09154 * 359.67621 * 22 20 19 25 25 H 1.09004 * 109.46955 * 86.34679 * 1 2 3 26 26 H 1.08998 * 109.47298 * 206.35130 * 1 2 3 27 27 H 1.08998 * 109.47326 * 326.34915 * 1 2 3 28 28 H 1.09002 * 109.47087 * 329.99422 * 3 2 1 29 29 H 1.09005 * 109.47108 * 209.99886 * 3 2 1 30 30 H 1.08995 * 109.47202 * 300.00175 * 4 3 2 31 31 H 1.09002 * 109.47109 * 59.99832 * 4 3 2 32 32 H 1.08995 * 109.47226 * 300.00334 * 5 4 3 33 33 H 1.09002 * 109.46982 * 59.99929 * 5 4 3 34 34 H 0.97000 * 120.00537 * 0.02562 * 6 5 4 35 35 H 0.96999 * 120.00011 * 179.97438 * 10 9 7 36 36 H 1.08003 * 120.04893 * 0.02562 * 18 17 15 37 37 H 1.07996 * 119.93556 * 179.97438 * 19 18 17 38 38 H 1.07997 * 120.07036 * 180.32063 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 1.4424 5 6 3.2180 3.0353 1.4424 6 7 3.4626 3.4579 2.8235 7 6 4.1359 4.6239 3.0737 8 1 4.4861 5.2319 2.2528 9 6 4.3672 5.0246 4.3824 10 7 3.9390 4.2843 5.3828 11 14 5.2849 6.6155 4.7237 12 1 5.6553 7.2589 3.4376 13 1 4.4140 7.5321 5.5025 14 1 6.5145 6.3203 5.5023 15 6 2.1388 -1.1672 0.0005 16 8 3.3478 -1.1710 0.1284 17 6 1.4084 -2.4418 -0.1545 18 6 1.9930 -3.6396 0.2628 19 6 1.3079 -4.8266 0.1157 20 6 0.0404 -4.8334 -0.4461 21 9 -0.6265 -5.9998 -0.5886 22 6 -0.5451 -3.6470 -0.8636 23 17 -2.1322 -3.6641 -1.5668 24 6 0.1297 -2.4528 -0.7152 25 1 -0.3633 0.0655 -1.0256 26 1 -0.3634 -0.9209 0.4561 27 1 -0.3634 0.8554 0.5694 28 1 1.6084 2.0284 -0.5139 29 1 3.1499 1.1384 -0.5138 30 1 1.5000 1.8409 1.9562 31 1 3.0415 0.9509 1.9563 32 1 4.1703 2.9045 0.9287 33 1 2.6293 3.7951 0.9283 34 1 3.1477 2.9120 3.5609 35 1 4.1010 4.5642 6.2973 36 1 2.9804 -3.6358 0.7003 37 1 1.7596 -5.7531 0.4379 38 1 -0.3285 -1.5288 -1.0355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754398720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:33 Heat of formation + Delta-G solvation = -48.380658 kcal Electronic energy + Delta-G solvation = -22751.719812 eV Core-core repulsion = 18956.006041 eV Total energy + Delta-G solvation = -3795.713771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.16789 -41.68557 -39.51712 -37.71875 -37.50069 -36.57342 -34.27861 -32.65211 -31.95393 -31.02521 -28.27360 -27.14834 -25.20706 -24.30033 -23.77120 -22.50695 -20.96463 -19.17102 -18.89765 -18.71580 -17.99513 -17.10905 -16.94567 -16.61647 -16.46795 -16.27850 -15.90985 -15.52977 -15.27076 -15.16990 -14.80920 -14.55545 -14.24574 -14.07864 -13.89998 -13.49215 -13.39551 -13.03128 -12.79574 -12.78731 -12.58564 -12.41164 -12.31103 -12.05960 -12.02203 -11.82594 -11.79481 -11.08684 -10.95762 -10.17586 -9.99007 -9.72075 -9.02809 -7.96861 -5.26732 -0.59783 -0.15254 0.82296 1.46746 1.48450 1.49126 1.58697 1.84678 2.40817 2.55540 2.82562 3.23242 3.36967 3.47292 3.81138 3.85947 3.89099 4.04406 4.15325 4.23772 4.31655 4.46554 4.54660 4.58710 4.60600 4.65585 4.73100 4.83638 4.86256 4.89400 5.00577 5.28707 5.31222 5.38895 5.48144 5.48428 6.24583 6.25641 6.98221 7.31038 8.06714 8.29486 9.27302 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.029518 B = 0.002235 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.347591 B =12523.484938 C =12860.886164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.605 5.605 3 C 0.128 3.872 4 C -0.124 4.124 5 C 0.154 3.846 6 N -0.750 5.750 7 C -0.246 4.246 8 H 0.078 0.922 9 C -0.080 4.080 10 N -0.972 5.972 11 Si 0.978 3.022 12 H -0.264 1.264 13 H -0.290 1.290 14 H -0.294 1.294 15 C 0.552 3.448 16 O -0.571 6.571 17 C -0.141 4.141 18 C -0.032 4.032 19 C -0.140 4.140 20 C 0.126 3.874 21 F -0.126 7.126 22 C -0.090 4.090 23 Cl -0.039 7.039 24 C -0.061 4.061 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.015 0.985 33 H 0.036 0.964 34 H 0.372 0.628 35 H 0.252 0.748 36 H 0.150 0.850 37 H 0.177 0.823 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.290 -19.547 -17.102 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.336 5.336 3 C 0.005 3.995 4 C -0.163 4.163 5 C 0.027 3.973 6 N -0.393 5.393 7 C -0.378 4.378 8 H 0.096 0.904 9 C -0.272 4.272 10 N -0.623 5.623 11 Si 0.806 3.194 12 H -0.188 1.188 13 H -0.217 1.217 14 H -0.221 1.221 15 C 0.341 3.659 16 O -0.451 6.451 17 C -0.144 4.144 18 C -0.051 4.051 19 C -0.158 4.158 20 C 0.106 3.894 21 F -0.104 7.104 22 C -0.118 4.118 23 Cl -0.010 7.010 24 C -0.080 4.080 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.203 0.797 35 H 0.061 0.939 36 H 0.168 0.832 37 H 0.194 0.806 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.772 -19.408 -17.198 29.362 hybrid contribution 0.308 0.331 0.875 0.984 sum -13.464 -19.077 -16.324 28.490 Atomic orbital electron populations 1.22798 0.77309 1.05198 1.03836 1.47829 1.08508 1.05278 1.71946 1.21410 0.97964 0.84524 0.95580 1.21871 1.00158 0.96183 0.98039 1.20715 0.96528 0.94078 0.85932 1.42633 1.68196 1.25398 1.03058 1.19721 1.27146 0.98759 0.92180 0.90370 1.25653 1.03299 1.02716 0.95487 1.69835 1.53305 1.40859 0.98305 0.85013 0.77452 0.78974 0.77954 1.18817 1.21725 1.22097 1.18529 0.86658 0.84333 0.76349 1.90815 1.15723 1.87516 1.51095 1.19836 0.95458 0.93687 1.05448 1.21362 1.00040 0.89981 0.93746 1.21313 0.92423 1.00843 1.01230 1.17876 0.91652 0.80549 0.99339 1.91563 1.79966 1.45675 1.93227 1.20950 0.90867 0.93978 1.05981 1.98410 1.21599 1.98812 1.82188 1.22276 0.92177 0.98648 0.94851 0.88525 0.89033 0.89329 0.86774 0.90960 0.91395 0.94314 0.96693 0.94658 0.79680 0.93948 0.83228 0.80579 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 8.65 127.77 1.10 1.68 16 2 N -0.60 -12.62 2.87 -850.34 -2.44 -15.06 16 3 C 0.13 3.10 5.37 86.38 0.46 3.57 16 4 C -0.12 -4.05 5.65 30.59 0.17 -3.87 16 5 C 0.15 6.24 6.26 86.38 0.54 6.78 16 6 N -0.75 -39.74 5.60 -343.47 -1.92 -41.67 16 7 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 8 H 0.08 4.28 7.83 -2.92 -0.02 4.26 16 9 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 10 N -0.97 -60.98 13.06 21.65 0.28 -60.69 16 11 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 14 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 15 C 0.55 13.86 7.51 86.75 0.65 14.51 16 16 O -0.57 -19.52 16.19 -3.93 -0.06 -19.59 16 17 C -0.14 -2.62 5.57 -20.09 -0.11 -2.73 16 18 C -0.03 -0.54 9.58 22.52 0.22 -0.33 16 19 C -0.14 -1.83 10.01 22.27 0.22 -1.61 16 20 C 0.13 1.89 7.28 22.49 0.16 2.05 16 21 F -0.13 -2.04 16.83 44.97 0.76 -1.29 16 22 C -0.09 -1.30 6.32 22.33 0.14 -1.16 16 23 Cl -0.04 -0.53 28.60 -2.72 -0.08 -0.61 16 24 C -0.06 -0.84 7.39 22.54 0.17 -0.67 16 25 H 0.10 0.57 7.00 -2.39 -0.02 0.55 16 26 H 0.09 0.95 5.25 -2.39 -0.01 0.94 16 27 H 0.09 0.97 8.10 -2.39 -0.02 0.95 16 28 H 0.11 2.03 8.07 -2.39 -0.02 2.02 16 29 H 0.07 1.99 7.53 -2.38 -0.02 1.97 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 35 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.15 2.61 7.79 -2.91 -0.02 2.59 16 37 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.19 1.72 4.03 -2.91 -0.01 1.71 16 Total: -1.00 -74.25 341.31 3.99 -70.26 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.39 Total: 19.11 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.04 Total: 0.71 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.08 Total: -117.42 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.06 Total: -19.59 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.76 Total: -1.29 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -74.25 3.99 -70.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754398720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.875 kcal (2) G-P(sol) polarization free energy of solvation -74.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds