Wall clock time and date at job start Tue Mar 31 2020 10:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46693 * 2 1 4 4 N 1.46496 * 109.47243 * 119.99850 * 2 1 3 5 5 C 1.36933 * 120.00245 * 275.00244 * 4 2 1 6 6 H 1.07995 * 120.00059 * 359.97438 * 5 4 2 7 7 C 1.38820 * 120.00107 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99760 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99967 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47035 * 90.00107 * 9 7 5 11 11 H 1.48505 * 109.46610 * 209.99989 * 9 7 5 12 12 H 1.48496 * 109.47000 * 329.99886 * 9 7 5 13 13 C 1.52997 * 109.47254 * 240.00284 * 2 1 3 14 14 H 1.09000 * 109.47347 * 174.99747 * 13 2 1 15 15 C 1.52996 * 109.46861 * 295.00020 * 13 2 1 16 16 N 1.46503 * 109.47240 * 54.99588 * 13 2 1 17 17 C 1.34774 * 120.00034 * 154.99933 * 16 13 2 18 18 O 1.21578 * 120.00091 * 0.02562 * 17 16 13 19 19 C 1.47650 * 120.00194 * 180.02562 * 17 16 13 20 20 C 1.39710 * 120.12727 * 0.25381 * 19 17 16 21 21 C 1.37773 * 119.89005 * 180.25406 * 20 19 17 22 22 C 1.38724 * 120.15678 * 359.74557 * 21 20 19 23 23 F 1.35104 * 119.86721 * 180.02562 * 22 21 20 24 24 C 1.38564 * 120.26050 * 359.97438 * 22 21 20 25 25 C 1.38033 * 120.10788 * 0.02562 * 24 22 21 26 26 Cl 1.73599 * 120.07718 * 179.97438 * 25 24 22 27 27 H 1.09004 * 109.47313 * 59.99931 * 1 2 3 28 28 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47173 * 299.99739 * 1 2 3 30 30 H 0.97006 * 119.99951 * 94.99930 * 4 2 1 31 31 H 0.97004 * 120.00020 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47302 * 299.99684 * 15 13 2 33 33 H 1.09000 * 109.47363 * 59.99736 * 15 13 2 34 34 H 1.09005 * 109.47363 * 179.97438 * 15 13 2 35 35 H 0.97006 * 120.00194 * 335.00884 * 16 13 2 36 36 H 1.08000 * 120.05255 * 359.97438 * 20 19 17 37 37 H 1.07994 * 119.92285 * 179.72113 * 21 20 19 38 38 H 1.08005 * 119.94453 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.9235 -1.9393 3.4504 9 14 2.7890 0.2697 5.1186 10 1 1.5211 0.1784 5.8860 11 1 3.8934 -0.3237 5.9147 12 1 3.0941 1.6949 4.8343 13 6 2.0400 -0.7212 -1.2492 14 1 3.1263 -0.6442 -1.2952 15 6 1.6352 -2.1953 -1.1880 16 7 1.4558 -0.1036 -2.4424 17 6 2.0912 -0.1936 -3.6275 18 8 3.1489 -0.7878 -3.7066 19 6 1.5027 0.4293 -4.8299 20 6 0.2900 1.1172 -4.7411 21 6 -0.2573 1.6921 -5.8672 22 6 0.3955 1.5938 -7.0873 23 9 -0.1462 2.1602 -8.1878 24 6 1.6015 0.9180 -7.1815 25 6 2.1596 0.3380 -6.0602 26 17 3.6702 -0.5091 -6.1793 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2490 -1.6318 1.1526 31 1 3.2461 -2.3968 4.2426 32 1 2.0699 -2.6549 -0.3003 33 1 0.5489 -2.2723 -1.1420 34 1 1.9982 -2.7091 -2.0782 35 1 0.6117 0.3703 -2.3794 36 1 -0.2198 1.1943 -3.7922 37 1 -1.1970 2.2201 -5.8001 38 1 2.1056 0.8450 -8.1339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755265179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:58 Heat of formation + Delta-G solvation = -60.371419 kcal Electronic energy + Delta-G solvation = -23363.166351 eV Core-core repulsion = 19566.932621 eV Total energy + Delta-G solvation = -3796.233730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.09905 -41.41946 -39.62772 -38.24546 -37.46598 -35.60953 -33.74104 -32.31982 -31.90319 -30.53408 -29.76559 -26.15700 -25.62123 -24.49360 -23.92421 -21.79537 -20.71641 -19.60358 -19.18506 -18.58518 -17.74712 -16.83727 -16.75407 -16.59338 -16.26133 -16.04955 -15.85461 -15.54900 -15.27981 -14.86830 -14.67018 -14.43904 -14.15335 -14.00456 -13.82274 -13.41944 -13.06402 -12.96407 -12.78971 -12.63233 -12.48873 -12.42737 -12.23730 -12.11329 -11.93799 -11.63794 -11.55877 -10.93046 -10.66404 -10.22173 -10.13150 -9.81907 -9.00944 -7.91950 -5.20405 -0.56416 -0.09166 0.99157 1.49527 1.50875 1.59000 1.65581 2.03261 2.50890 2.59673 3.01063 3.42185 3.47225 3.57813 3.82004 3.92288 3.96585 4.01983 4.11755 4.22732 4.36325 4.61037 4.63643 4.71217 4.75603 4.88840 4.92185 4.93179 4.99760 5.07373 5.24013 5.28764 5.49306 5.52108 5.57767 5.68038 6.30361 6.53327 7.21412 7.37029 8.12150 8.34363 9.31677 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.002862 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.905364 B = 9782.389909 C =10462.882957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.165 3.835 3 H 0.048 0.952 4 N -0.734 5.734 5 C -0.236 4.236 6 H 0.079 0.921 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.269 1.269 13 C 0.152 3.848 14 H 0.058 0.942 15 C -0.150 4.150 16 N -0.699 5.699 17 C 0.548 3.452 18 O -0.553 6.553 19 C -0.152 4.152 20 C -0.034 4.034 21 C -0.142 4.142 22 C 0.135 3.865 23 F -0.129 7.129 24 C -0.158 4.158 25 C 0.024 3.976 26 Cl -0.040 7.040 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.376 0.624 31 H 0.250 0.750 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.412 0.588 36 H 0.176 0.824 37 H 0.183 0.817 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 8.463 -23.485 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.066 0.934 4 N -0.377 5.377 5 C -0.368 4.368 6 H 0.097 0.903 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.800 3.200 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.194 1.194 13 C 0.047 3.953 14 H 0.077 0.923 15 C -0.208 4.208 16 N -0.353 5.353 17 C 0.335 3.665 18 O -0.432 6.432 19 C -0.156 4.156 20 C -0.053 4.053 21 C -0.161 4.161 22 C 0.116 3.884 23 F -0.107 7.107 24 C -0.177 4.177 25 C -0.005 4.005 26 Cl -0.010 7.010 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.252 0.748 36 H 0.193 0.807 37 H 0.200 0.800 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.087 8.136 -23.453 26.435 hybrid contribution 0.389 -0.105 0.908 0.994 sum -8.697 8.031 -22.544 25.463 Atomic orbital electron populations 1.22376 0.96394 1.01736 1.01377 1.20550 0.94044 0.94897 0.84932 0.93351 1.42665 1.78652 1.10552 1.05830 1.19617 1.34820 0.94307 0.88050 0.90333 1.25529 1.03021 0.96867 1.01436 1.69816 1.52694 1.10230 1.29352 0.85176 0.76778 0.78062 0.79968 1.21383 1.22718 1.19418 1.20888 0.97479 0.93023 0.83951 0.92339 1.22029 1.02378 0.95372 1.01026 1.45866 1.26085 1.56432 1.06964 1.18388 0.84385 0.80056 0.83680 1.90878 1.23204 1.43496 1.85613 1.19858 0.98370 1.04947 0.92413 1.21478 0.91518 0.91743 1.00563 1.21528 1.02767 1.01998 0.89784 1.17810 0.92131 0.94669 0.83836 1.91563 1.85072 1.82232 1.51824 1.21075 0.96412 1.00775 0.99482 1.20845 0.89549 0.96374 0.93691 1.98440 1.29245 1.75256 1.98107 0.90149 0.92956 0.93768 0.78986 0.94142 0.93049 0.90716 0.93070 0.74810 0.80659 0.79999 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 9.01 71.98 0.65 -3.91 16 2 C 0.16 5.90 2.93 44.99 0.13 6.03 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 N -0.73 -35.36 5.03 -322.95 -1.63 -36.99 16 5 C -0.24 -12.65 9.93 84.04 0.83 -11.82 16 6 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 7 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 8 N -0.97 -58.89 13.06 21.65 0.28 -58.60 16 9 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 C 0.15 4.97 2.62 44.99 0.12 5.09 16 14 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 15 C -0.15 -4.89 9.00 71.98 0.65 -4.25 16 16 N -0.70 -16.90 4.94 -445.60 -2.20 -19.10 16 17 C 0.55 14.82 7.73 86.73 0.67 15.49 16 18 O -0.55 -19.60 13.63 -3.96 -0.05 -19.65 16 19 C -0.15 -3.05 5.88 -20.07 -0.12 -3.17 16 20 C -0.03 -0.40 9.53 22.52 0.21 -0.19 16 21 C -0.14 -1.33 10.01 22.28 0.22 -1.11 16 22 C 0.14 1.76 7.31 22.46 0.16 1.93 16 23 F -0.13 -1.75 17.26 44.97 0.78 -0.97 16 24 C -0.16 -2.46 9.79 22.30 0.22 -2.24 16 25 C 0.02 0.49 6.35 22.59 0.14 0.64 16 26 Cl -0.04 -1.02 26.02 -2.72 -0.07 -1.09 16 27 H 0.08 1.49 6.29 -2.38 -0.02 1.47 16 28 H 0.05 1.54 6.57 -2.39 -0.02 1.53 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.38 19.61 5.77 -92.70 -0.54 19.08 16 31 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.05 1.96 6.29 -2.39 -0.02 1.94 16 33 H 0.07 2.13 6.57 -2.39 -0.02 2.12 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.41 6.83 4.60 -92.70 -0.43 6.40 16 36 H 0.18 0.95 6.40 -2.91 -0.02 0.93 16 37 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 38 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -70.13 333.08 3.66 -66.47 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.16 Total: 23.75 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 4.36 Total: -1.35 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -3.54 Total: -114.69 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.78 Total: -0.97 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.09 kcal Total: -70.13 3.66 -66.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755265179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.102 kcal (2) G-P(sol) polarization free energy of solvation -70.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds