Wall clock time and date at job start Tue Mar 31 2020 10:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41380 * 126.80347 * 2 1 4 4 C 1.35451 * 103.98649 * 179.77327 * 3 2 1 5 5 C 1.50706 * 126.77668 * 180.22754 * 4 3 2 6 6 S 1.81395 * 109.47245 * 90.00369 * 5 4 3 7 7 O 1.42102 * 110.54254 * 291.62648 * 6 5 4 8 8 O 1.42100 * 110.54408 * 68.37139 * 6 5 4 9 9 N 1.65601 * 104.45108 * 180.02562 * 6 5 4 10 10 C 1.46926 * 120.62809 * 269.71855 * 9 6 5 11 11 C 1.53625 * 108.54052 * 126.36833 * 10 9 6 12 12 C 1.53034 * 109.24382 * 54.85539 * 11 10 9 13 13 C 1.50693 * 109.45232 * 178.49611 * 12 11 10 14 14 H 1.08000 * 120.00328 * 120.06497 * 13 12 11 15 15 C 1.37885 * 119.99991 * 300.06387 * 13 12 11 16 16 N 1.31510 * 120.00112 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99917 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46888 * 89.99966 * 17 15 13 19 19 H 1.48498 * 109.47144 * 209.99920 * 17 15 13 20 20 H 1.48504 * 109.47084 * 330.00060 * 17 15 13 21 21 C 1.53041 * 109.54132 * 298.51344 * 12 11 10 22 22 C 1.46921 * 120.63200 * 89.99996 * 9 6 5 23 23 O 1.34041 * 106.44823 * 0.22995 * 4 3 2 24 24 N 1.20916 * 111.56681 * 359.97438 * 23 4 3 25 25 H 1.08995 * 109.47264 * 89.99830 * 1 2 3 26 26 H 1.09002 * 109.46590 * 209.99262 * 1 2 3 27 27 H 1.08996 * 109.47172 * 329.99409 * 1 2 3 28 28 H 1.08002 * 128.00820 * 0.04548 * 3 2 1 29 29 H 1.09003 * 109.46799 * 210.00794 * 5 4 3 30 30 H 1.09005 * 109.46817 * 330.00360 * 5 4 3 31 31 H 1.08993 * 109.58755 * 246.19903 * 10 9 6 32 32 H 1.08997 * 109.58761 * 6.63077 * 10 9 6 33 33 H 1.09003 * 109.63548 * 294.86092 * 11 10 9 34 34 H 1.09004 * 109.42897 * 174.72675 * 11 10 9 35 35 H 1.09001 * 109.45999 * 58.52879 * 12 11 10 36 36 H 0.96998 * 120.00373 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.49385 * 301.41630 * 21 12 11 38 38 H 1.08997 * 109.52753 * 181.32941 * 21 12 11 39 39 H 1.09010 * 109.58641 * 353.36966 * 22 9 6 40 40 H 1.08993 * 109.59045 * 113.65457 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 0.0052 5 6 4.9022 1.3695 0.0123 6 16 5.4157 1.6733 1.7253 7 8 4.5312 2.5894 2.3560 8 8 5.7834 0.4557 2.3591 9 7 6.8387 2.5090 1.5882 10 6 8.1228 1.7970 1.5337 11 6 8.8851 2.2594 0.2826 12 6 9.0129 3.7842 0.3047 13 6 9.7921 4.2400 -0.9019 14 1 9.3387 4.9122 -1.6153 15 6 11.0841 3.7989 -1.0951 16 7 11.6365 2.9807 -0.2262 17 14 12.0499 4.3634 -2.5912 18 1 12.7884 5.6090 -2.2624 19 1 13.0144 3.3055 -2.9858 20 1 11.1144 4.6244 -3.7146 21 6 7.6188 4.4151 0.2794 22 6 6.8417 3.9769 1.5248 23 8 3.4538 -0.7254 0.0027 24 7 2.2869 -1.0424 -0.0027 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 2.0710 2.1743 0.0007 29 1 5.6684 0.7865 -0.4988 30 1 4.7674 2.3217 -0.5009 31 1 8.7058 2.0261 2.4256 32 1 7.9431 0.7234 1.4778 33 1 8.3421 1.9527 -0.6114 34 1 9.8786 1.8110 0.2771 35 1 9.5342 4.0918 1.2112 36 1 12.5455 2.6707 -0.3619 37 1 7.0876 4.0881 -0.6145 38 1 7.7105 5.5012 0.2713 39 1 5.8165 4.3421 1.4630 40 1 7.3201 4.3802 2.4172 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540986708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:41 Heat of formation + Delta-G solvation = -15.706376 kcal Electronic energy + Delta-G solvation = -24659.561101 eV Core-core repulsion = 20990.768204 eV Total energy + Delta-G solvation = -3668.792897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.20573 -37.84146 -37.13303 -35.91453 -35.09414 -33.88513 -33.50630 -30.95903 -30.15712 -28.97250 -28.44629 -25.83141 -23.39759 -22.62062 -22.40843 -20.74552 -19.53437 -18.60026 -18.04185 -17.64055 -17.36818 -16.35955 -16.14547 -15.98605 -14.98809 -14.61757 -14.38955 -14.04446 -13.67412 -13.53432 -13.35723 -13.24229 -13.14035 -12.94022 -12.83848 -12.73286 -12.24646 -12.06760 -11.99262 -11.60405 -11.45554 -11.40551 -11.01244 -10.93938 -10.70184 -10.47056 -10.28751 -10.14147 -9.70516 -9.61558 -9.26275 -9.05954 -8.48796 -8.32869 -6.07280 -4.14135 0.06981 1.21612 1.93447 2.50790 2.85083 3.24667 3.32565 3.34452 3.75929 3.89251 3.96716 4.19399 4.36489 4.62111 4.67915 4.89222 5.03905 5.14799 5.17167 5.20761 5.22659 5.45813 5.49101 5.64227 5.80511 5.81243 5.99848 6.07023 6.24960 6.31836 6.34449 6.62262 6.79259 6.97099 7.06788 7.32599 7.64000 7.86985 7.95655 8.00848 8.34648 8.89750 9.51480 10.98025 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.003472 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.903085 B = 8063.189127 C = 8432.841990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.015 3.985 3 C -0.211 4.211 4 C -0.028 4.028 5 C -0.560 4.560 6 S 2.611 3.389 7 O -0.949 6.949 8 O -0.944 6.944 9 N -0.985 5.985 10 C 0.115 3.885 11 C -0.126 4.126 12 C 0.050 3.950 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.126 4.126 22 C 0.120 3.880 23 O 0.110 5.890 24 N -0.357 5.357 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.181 0.819 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 -2.292 0.650 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.143 4.143 3 C -0.234 4.234 4 C -0.093 4.093 5 C -0.684 4.684 6 S 2.700 3.300 7 O -0.939 6.939 8 O -0.934 6.934 9 N -0.825 5.825 10 C -0.009 4.009 11 C -0.165 4.165 12 C 0.031 3.969 13 C -0.553 4.553 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.165 4.165 22 C -0.005 4.005 23 O 0.042 5.958 24 N -0.061 5.061 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.199 0.801 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.135 -3.970 1.459 17.650 hybrid contribution 0.769 1.209 -1.765 2.273 sum -16.367 -2.762 -0.307 16.601 Atomic orbital electron populations 1.20201 0.85444 1.04132 1.03562 1.23666 0.99336 0.88518 1.02812 1.22602 0.90661 1.01873 1.08260 1.23147 0.96082 0.84365 1.05692 1.29608 0.99842 1.08012 1.30984 1.05213 0.73865 0.74337 0.76594 1.93577 1.65825 1.63245 1.71288 1.93604 1.81899 1.46847 1.71088 1.57657 1.20675 1.15635 1.88518 1.21891 0.82636 0.94777 1.01604 1.22143 1.01122 1.00470 0.92815 1.18594 0.89709 0.91015 0.97564 1.21198 0.97959 1.27990 1.08145 0.92728 1.24965 0.97631 0.95034 0.96330 1.69829 1.14426 1.33067 1.35500 0.86636 0.79937 0.78388 0.83248 1.20750 1.21274 1.20038 1.22051 0.99084 1.00290 0.95074 1.21592 1.00777 0.77673 1.00477 1.84886 1.21728 1.21905 1.67278 1.73870 0.89140 1.24004 1.19053 0.89967 0.90314 0.89648 0.80124 0.82318 0.82013 0.91160 0.90680 0.94283 0.87697 0.95267 0.92895 0.93010 0.91966 0.90587 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.47 36.00 0.38 -0.19 16 2 C 0.02 0.18 7.33 -82.10 -0.60 -0.43 16 3 C -0.21 -2.38 11.06 -39.38 -0.44 -2.81 16 4 C -0.03 -0.36 6.75 -35.30 -0.24 -0.59 16 5 C -0.56 -6.35 6.74 36.01 0.24 -6.10 16 6 S 2.61 38.14 5.40 -107.50 -0.58 37.56 16 7 O -0.95 -15.30 16.72 -57.54 -0.96 -16.26 16 8 O -0.94 -16.56 16.72 -57.54 -0.96 -17.52 16 9 N -0.98 -15.28 3.21 -113.28 -0.36 -15.65 16 10 C 0.11 1.98 6.34 -3.49 -0.02 1.96 16 11 C -0.13 -2.57 5.17 -26.39 -0.14 -2.71 16 12 C 0.05 1.09 2.06 -91.74 -0.19 0.90 16 13 C -0.51 -12.90 8.56 -34.44 -0.29 -13.20 16 14 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 16 N -0.89 -23.68 11.31 55.43 0.63 -23.05 16 17 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.13 -2.20 5.30 -26.61 -0.14 -2.34 16 22 C 0.12 1.81 6.31 -3.71 -0.02 1.79 16 23 O 0.11 1.60 11.20 17.17 0.19 1.79 16 24 N -0.36 -5.05 12.07 33.43 0.40 -4.65 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.16 1.60 8.14 -51.92 -0.42 1.17 16 30 H 0.16 1.40 8.14 -51.92 -0.42 0.98 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.19 7.09 -51.93 -0.37 0.82 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 2.46 6.03 -51.93 -0.31 2.14 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.98 7.10 -51.92 -0.37 0.61 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -31.37 342.77 -8.72 -40.09 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.66 Total: -0.38 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.56 Total: -22.22 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.67 Total: -43.35 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.73 Total: -32.00 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 38.14 SS G_CDS: -0.58 Total: 37.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.37 -8.72 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540986708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.387 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds