Wall clock time and date at job start Tue Mar 31 2020 10:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29025 * 124.91925 * 2 1 4 4 C 1.31777 * 117.12415 * 180.22452 * 3 2 1 5 5 C 1.50706 * 122.74900 * 179.75618 * 4 3 2 6 6 C 1.33637 * 114.50097 * 359.48479 * 4 3 2 7 7 C 1.50700 * 126.03650 * 180.26738 * 6 4 3 8 8 H 1.08998 * 109.47321 * 15.00336 * 7 6 4 9 9 C 1.53000 * 109.47058 * 255.00137 * 7 6 4 10 10 N 1.46905 * 109.47337 * 135.00167 * 7 6 4 11 11 C 1.46892 * 110.99851 * 303.95679 * 10 7 6 12 12 C 1.46891 * 111.00359 * 179.97438 * 10 7 6 13 13 C 1.52998 * 109.47481 * 190.00293 * 12 10 7 14 14 C 1.52997 * 109.47120 * 180.02562 * 13 12 10 15 15 S 1.81006 * 109.46734 * 179.97438 * 14 13 12 16 16 C 1.76201 * 100.00018 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99764 * 0.02562 * 16 15 14 18 18 C 1.38791 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00446 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99826 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47123 * 89.99878 * 20 18 16 22 22 H 1.48501 * 109.47096 * 210.00040 * 20 18 16 23 23 H 1.48501 * 109.46678 * 329.99820 * 20 18 16 24 24 S 1.70985 * 124.91418 * 179.69410 * 2 1 3 25 25 H 1.08997 * 109.47741 * 270.30328 * 1 2 3 26 26 H 1.09004 * 109.46884 * 30.30712 * 1 2 3 27 27 H 1.09008 * 109.47556 * 150.29932 * 1 2 3 28 28 H 1.09001 * 109.46953 * 269.70773 * 5 4 3 29 29 H 1.09000 * 109.47318 * 29.70371 * 5 4 3 30 30 H 1.09000 * 109.47161 * 149.71001 * 5 4 3 31 31 H 1.08998 * 109.47433 * 299.99754 * 9 7 6 32 32 H 1.08992 * 109.47396 * 60.00224 * 9 7 6 33 33 H 1.09004 * 109.47404 * 180.02562 * 9 7 6 34 34 H 1.08998 * 109.47765 * 59.99220 * 11 10 7 35 35 H 1.09004 * 109.47503 * 180.02562 * 11 10 7 36 36 H 1.09008 * 109.47116 * 299.99489 * 11 10 7 37 37 H 1.09004 * 109.47167 * 310.00114 * 12 10 7 38 38 H 1.09007 * 109.46943 * 69.99930 * 12 10 7 39 39 H 1.09004 * 109.46774 * 300.00062 * 13 12 10 40 40 H 1.08994 * 109.47524 * 59.99693 * 13 12 10 41 41 H 1.08994 * 109.47277 * 299.99516 * 14 13 12 42 42 H 1.08998 * 109.47356 * 59.99825 * 14 13 12 43 43 H 0.96998 * 120.00480 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8792 -0.0046 5 6 4.5307 2.0245 -0.0106 6 6 3.9353 -0.4007 0.0022 7 6 5.3574 -0.8995 0.0049 8 1 6.0288 -0.0817 0.2666 9 6 5.7151 -1.4280 -1.3856 10 7 5.4953 -1.9806 0.9900 11 6 5.0697 -1.5351 2.3235 12 6 6.8716 -2.4930 1.0201 13 6 6.9226 -3.7685 1.8635 14 6 8.3563 -4.3019 1.8953 15 16 8.4167 -5.8105 2.8937 16 6 10.1309 -6.1963 2.7618 17 1 10.7851 -5.5587 2.1854 18 6 10.6405 -7.3193 3.3984 19 7 11.9212 -7.6072 3.3003 20 14 9.5089 -8.4223 4.3947 21 1 8.9493 -9.4804 3.5157 22 1 10.2771 -9.0512 5.4991 23 1 8.4009 -7.6120 4.9612 24 16 2.4856 -1.4021 0.0075 25 1 -0.3634 0.0054 1.0276 26 1 -0.3633 0.8873 -0.5186 27 1 -0.3634 -0.8927 -0.5092 28 1 4.7670 2.2951 -1.0397 29 1 4.0906 2.8818 0.4986 30 1 5.4432 1.7248 0.5049 31 1 5.0438 -2.2458 -1.6473 32 1 5.6129 -0.6260 -2.1165 33 1 6.7435 -1.7892 -1.3836 34 1 4.0249 -1.2264 2.2872 35 1 5.1824 -2.3544 3.0336 36 1 5.6863 -0.6936 2.6395 37 1 7.1987 -2.7157 0.0044 38 1 7.5295 -1.7418 1.4572 39 1 6.5956 -3.5458 2.8792 40 1 6.2648 -4.5197 1.4265 41 1 8.6837 -4.5245 0.8798 42 1 9.0139 -3.5506 2.3326 43 1 12.2773 -8.3923 3.7449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:22 Heat of formation + Delta-G solvation = 29.007154 kcal Electronic energy + Delta-G solvation = -21212.768733 eV Core-core repulsion = 18124.500726 eV Total energy + Delta-G solvation = -3088.268007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32284 -38.37895 -34.33022 -32.65950 -32.43590 -31.01058 -29.52550 -28.00105 -26.27272 -25.66821 -24.59650 -23.05775 -21.84903 -20.52878 -18.96416 -18.06741 -17.45332 -16.09124 -15.83431 -15.51564 -15.06950 -14.91289 -14.73446 -14.23247 -13.90738 -13.65604 -13.60504 -13.45596 -13.01633 -12.85100 -12.64837 -12.57371 -12.38539 -12.30590 -12.12287 -11.92122 -11.70073 -11.51416 -11.32484 -11.28569 -11.05259 -10.98754 -10.33187 -10.17092 -9.81826 -9.74809 -9.32596 -9.00616 -8.78514 -8.56208 -8.48884 -6.94101 -6.28438 -4.00604 0.48254 1.16201 1.63353 2.52672 3.00118 3.30237 3.45436 3.52319 3.76386 3.84639 4.31674 4.42570 4.68696 4.78721 4.85760 4.95637 4.99005 5.03146 5.04856 5.09763 5.10410 5.22408 5.31393 5.37479 5.42890 5.45756 5.50798 5.53674 5.60719 5.67015 5.68461 5.75116 5.85845 5.90965 6.01761 6.06756 6.23348 6.46513 6.63002 6.89272 6.93868 7.54228 7.95307 8.44046 9.17552 10.81042 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.002431 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.411928 B =11516.676870 C =12037.973140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.026 3.974 3 N -0.474 5.474 4 C 0.061 3.939 5 C -0.078 4.078 6 C -0.212 4.212 7 C 0.157 3.843 8 H 0.062 0.938 9 C -0.145 4.145 10 N -0.536 5.536 11 C 0.020 3.980 12 C 0.056 3.944 13 C -0.096 4.096 14 C -0.082 4.082 15 S -0.215 6.215 16 C -0.502 4.502 17 H 0.087 0.913 18 C 0.091 3.909 19 N -0.882 5.882 20 Si 0.862 3.138 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.238 1.238 24 S 0.165 5.835 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.025 0.975 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.756 17.538 -8.159 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.252 4.252 3 N -0.190 5.190 4 C -0.072 4.072 5 C -0.138 4.138 6 C -0.334 4.334 7 C 0.046 3.954 8 H 0.080 0.920 9 C -0.203 4.203 10 N -0.261 5.261 11 C -0.128 4.128 12 C -0.073 4.073 13 C -0.135 4.135 14 C -0.231 4.231 15 S 0.013 5.987 16 C -0.649 4.649 17 H 0.105 0.895 18 C -0.117 4.117 19 N -0.519 5.519 20 Si 0.687 3.313 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.162 1.162 24 S 0.422 5.578 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.100 0.900 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.234 15.899 -7.686 28.393 hybrid contribution 1.911 1.369 0.098 2.352 sum -20.323 17.267 -7.588 27.727 Atomic orbital electron populations 1.20406 0.85386 1.04013 1.03791 1.27033 1.01821 0.92216 1.04094 1.66146 1.04252 1.32042 1.16521 1.20111 0.90310 0.93878 1.02917 1.20363 0.95810 0.94758 1.02829 1.25602 0.99643 0.95571 1.12562 1.19991 0.88578 0.92782 0.94026 0.92031 1.21949 1.02581 1.01609 0.94165 1.62084 1.24427 1.33003 1.06538 1.22475 1.00306 0.99847 0.90215 1.22272 0.87066 0.96577 1.01358 1.21332 0.96080 0.96044 1.00043 1.23008 0.98145 0.99572 1.02349 1.84167 1.16636 1.30867 1.67040 1.22124 0.90105 1.14724 1.37972 0.89451 1.24800 0.94938 0.96624 0.95354 1.69935 1.12156 1.27078 1.42748 0.86666 0.81975 0.81961 0.80717 1.19355 1.20145 1.16170 1.84200 0.95966 1.10495 1.67143 0.89727 0.89530 0.90158 0.90715 0.90708 0.90910 0.91419 0.91992 0.91185 0.91863 0.90299 0.95628 0.90024 0.94601 0.91524 0.90632 0.91426 0.91627 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.00 0.38 -0.09 16 2 C 0.03 0.25 7.39 -13.46 -0.10 0.15 16 3 N -0.47 -5.44 10.53 -8.06 -0.08 -5.53 16 4 C 0.06 0.65 6.74 -84.22 -0.57 0.08 16 5 C -0.08 -0.65 10.02 36.01 0.36 -0.29 16 6 C -0.21 -2.21 3.95 -35.92 -0.14 -2.35 16 7 C 0.16 1.58 2.38 -68.86 -0.16 1.41 16 8 H 0.06 0.60 6.41 -51.93 -0.33 0.26 16 9 C -0.15 -1.34 8.97 37.16 0.33 -1.01 16 10 N -0.54 -6.13 4.53 -236.29 -1.07 -7.20 16 11 C 0.02 0.22 9.06 60.06 0.54 0.77 16 12 C 0.06 0.69 4.77 -3.83 -0.02 0.67 16 13 C -0.10 -1.46 5.15 -26.73 -0.14 -1.59 16 14 C -0.08 -1.56 5.67 37.16 0.21 -1.35 16 15 S -0.21 -5.23 19.41 -107.50 -2.09 -7.31 16 16 C -0.50 -14.56 10.04 30.94 0.31 -14.24 16 17 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 18 C 0.09 2.67 5.50 -17.44 -0.10 2.57 16 19 N -0.88 -26.80 13.97 55.49 0.78 -26.03 16 20 Si 0.86 21.59 27.74 -169.99 -4.72 16.87 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 24 S 0.17 1.62 22.38 -107.50 -2.41 -0.78 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.54 6.61 -51.93 -0.34 0.20 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.63 6.20 -51.93 -0.32 0.31 16 34 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 35 H 0.08 0.91 6.30 -51.93 -0.33 0.59 16 36 H 0.03 0.28 8.14 -51.92 -0.42 -0.15 16 37 H 0.08 0.96 5.83 -51.93 -0.30 0.66 16 38 H 0.04 0.44 8.12 -51.92 -0.42 0.02 16 39 H 0.07 1.02 6.47 -51.93 -0.34 0.68 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 42 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -32.01 367.82 -10.08 -42.08 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.94 Total: -2.37 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 0.91 Total: -15.28 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.38 Total: -38.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.72 Total: 16.87 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -4.49 Total: -8.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.01 -10.08 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.089 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds