Wall clock time and date at job start Tue Mar 31 2020 10:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47524 * 319.30862 * 3 2 1 5 5 H 1.09004 * 109.47146 * 305.00466 * 4 3 2 6 6 O 1.45204 * 109.46932 * 65.00143 * 4 3 2 7 7 C 1.34229 * 116.99680 * 210.00308 * 6 4 3 8 8 O 1.20820 * 120.00264 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99692 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47242 * 179.97438 * 9 7 6 11 11 C 1.38299 * 119.93217 * 269.72899 * 10 9 7 12 12 C 1.38093 * 120.06953 * 179.72477 * 11 10 9 13 13 C 1.38883 * 119.92808 * 0.56550 * 12 11 10 14 14 O 1.35754 * 120.06438 * 179.68623 * 13 12 11 15 15 C 1.34826 * 116.99724 * 174.49160 * 14 13 12 16 16 H 1.07998 * 120.00100 * 5.04739 * 15 14 13 17 17 C 1.38654 * 119.99970 * 185.05457 * 15 14 13 18 18 N 1.31557 * 120.00012 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47303 * 60.00249 * 19 17 15 21 21 H 1.48499 * 109.46956 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47359 * 299.99968 * 19 17 15 23 23 C 1.38871 * 119.86468 * 359.70509 * 13 12 11 24 24 C 1.38101 * 119.93230 * 0.02562 * 23 13 12 25 25 C 1.52997 * 109.47208 * 185.00163 * 4 3 2 26 26 C 1.52996 * 117.49839 * 248.74602 * 25 4 3 27 27 C 1.53002 * 117.49371 * 180.08569 * 25 4 3 28 28 H 4.44647 * 5.63301 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46747 * 199.30719 * 3 2 1 30 30 H 1.08996 * 109.47436 * 79.31447 * 3 2 1 31 31 H 1.09002 * 109.47056 * 59.99464 * 9 7 6 32 32 H 1.09001 * 109.46884 * 299.99951 * 9 7 6 33 33 H 1.08005 * 119.96050 * 359.97425 * 11 10 9 34 34 H 1.07999 * 120.03730 * 180.26989 * 12 11 10 35 35 H 0.97002 * 120.00021 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.03853 * 179.97438 * 23 13 12 37 37 H 1.07997 * 119.96732 * 179.97438 * 24 23 13 38 38 H 1.09003 * 115.54751 * 34.42175 * 25 4 3 39 39 H 1.09001 * 117.49771 * 0.02562 * 26 25 4 40 40 H 1.09000 * 117.49520 * 145.02690 * 26 25 4 41 41 H 1.09010 * 117.49474 * 214.97819 * 27 25 4 42 42 H 1.08994 * 117.50421 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.0928 0.9405 5 1 2.7219 -0.9530 1.9302 6 8 2.7732 -2.3942 0.4229 7 6 2.5645 -3.3697 1.3210 8 8 2.6974 -3.1437 2.5004 9 6 2.1644 -4.7470 0.8581 10 6 1.9944 -5.6490 2.0533 11 6 3.0703 -6.3780 2.5263 12 6 2.9191 -7.2011 3.6247 13 6 1.6821 -7.3053 4.2475 14 8 1.5288 -8.1185 5.3236 15 6 0.3351 -8.0869 5.9496 16 1 -0.4726 -7.4967 5.5425 17 6 0.1444 -8.8119 7.1160 18 7 1.1282 -9.5311 7.6116 19 14 -1.5093 -8.7675 7.9836 20 1 -2.5622 -9.2767 7.0686 21 1 -1.4543 -9.6208 9.1977 22 1 -1.8261 -7.3702 8.3740 23 6 0.6023 -6.5763 3.7668 24 6 0.7612 -5.7506 2.6712 25 6 4.6814 -1.0115 1.0370 26 6 5.4905 -2.1497 0.4120 27 6 5.3877 -2.0296 1.9345 28 1 -1.0497 -0.0002 0.0004 29 1 3.0089 0.9707 0.3398 30 1 3.0095 -0.1897 -1.0098 31 1 2.9392 -5.1504 0.2061 32 1 1.2237 -4.6873 0.3107 33 1 4.0307 -6.3004 2.0383 34 1 3.7607 -7.7669 3.9963 35 1 0.9949 -10.0381 8.4278 36 1 -0.3610 -6.6555 4.2486 37 1 -0.0782 -5.1837 2.2967 38 1 5.1027 -0.0075 0.9862 39 1 4.9365 -2.9562 -0.0684 40 1 6.4444 -1.8945 -0.0496 41 1 6.2741 -1.6954 2.4740 42 1 4.7661 -2.7570 2.4566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079209284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:12 Heat of formation + Delta-G solvation = -28.869495 kcal Electronic energy + Delta-G solvation = -25029.240423 eV Core-core repulsion = 21327.973123 eV Total energy + Delta-G solvation = -3701.267300 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.89779 -40.76068 -38.97604 -38.06510 -36.73136 -35.18837 -34.43181 -33.03233 -31.82778 -31.34532 -28.49681 -27.15688 -25.57050 -23.68328 -23.46396 -23.20183 -21.80600 -20.94153 -19.87825 -19.07791 -18.86775 -18.70754 -18.03646 -17.17542 -16.51396 -16.41268 -16.01919 -15.83805 -15.55699 -15.40486 -15.09609 -14.76437 -14.42951 -14.38143 -14.29558 -14.12087 -13.64809 -13.40409 -13.19116 -12.96426 -12.93335 -12.51347 -12.41010 -12.33421 -12.28804 -12.15692 -11.70296 -11.56011 -11.48789 -11.21414 -11.10416 -10.96413 -10.82023 -10.79699 -9.80682 -8.97179 -8.49102 -6.17604 0.56517 0.57823 1.27523 1.33182 1.43455 1.49742 1.69727 1.86962 1.93870 2.16451 2.79375 2.86183 3.14536 3.36516 3.48590 3.72479 3.76031 3.85604 3.97823 3.98637 3.99708 4.14934 4.20828 4.28837 4.39460 4.48796 4.54481 4.63371 4.75826 4.77888 4.83458 4.85834 4.98684 5.04435 5.11732 5.14670 5.21422 5.25378 5.26385 5.49950 5.53513 5.68295 5.70966 6.00438 6.17987 6.69838 6.85711 6.95237 7.75323 8.73948 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.002804 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.067455 B = 9984.812950 C =10714.820002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.218 4.218 3 C 0.001 3.999 4 C 0.119 3.881 5 H 0.065 0.935 6 O -0.345 6.345 7 C 0.460 3.540 8 O -0.527 6.527 9 C -0.051 4.051 10 C -0.156 4.156 11 C -0.051 4.051 12 C -0.205 4.205 13 C 0.117 3.883 14 O -0.231 6.231 15 C -0.417 4.417 16 H 0.101 0.899 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.260 1.260 23 C -0.244 4.244 24 C -0.056 4.056 25 C -0.170 4.170 26 C -0.158 4.158 27 C -0.206 4.206 28 H 0.238 0.762 29 H 0.133 0.867 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.273 0.727 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 19.243 -19.775 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.218 4.218 3 C -0.034 4.034 4 C 0.064 3.936 5 H 0.083 0.917 6 O -0.262 6.262 7 C 0.304 3.696 8 O -0.416 6.416 9 C -0.088 4.088 10 C -0.157 4.157 11 C -0.069 4.069 12 C -0.224 4.224 13 C 0.067 3.933 14 O -0.137 6.137 15 C -0.493 4.493 16 H 0.118 0.882 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.837 3.163 20 H -0.179 1.179 21 H -0.194 1.194 22 H -0.184 1.184 23 C -0.263 4.263 24 C -0.074 4.074 25 C -0.188 4.188 26 C -0.195 4.195 27 C -0.243 4.243 28 H 0.254 0.746 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.861 19.049 -19.148 27.285 hybrid contribution -0.821 -0.347 1.286 1.565 sum 3.040 18.702 -17.863 26.040 Atomic orbital electron populations 1.25669 0.97045 0.99986 0.99972 1.23538 0.95506 1.01299 1.01458 1.18923 0.84240 0.98330 1.01949 1.22244 0.93524 0.79932 0.97914 0.91705 1.86569 1.79049 1.20549 1.40058 1.24258 0.72746 0.88056 0.84561 1.90692 1.47943 1.82851 1.20103 1.20236 1.06862 0.85328 0.96405 1.19142 0.93792 1.02247 1.00489 1.20865 0.98871 0.93532 0.93637 1.20440 0.94948 1.06372 1.00690 1.19949 0.95098 0.90076 0.88192 1.83940 1.36699 1.55156 1.37922 1.21792 0.88320 1.31603 1.07548 0.88209 1.26605 1.03994 0.95040 0.96319 1.70177 1.34388 1.29413 1.21844 0.84656 0.74826 0.79229 0.77551 1.17896 1.19430 1.18410 1.21217 0.99040 1.04193 1.01889 1.20930 0.97712 0.95488 0.93311 1.22821 0.91702 0.97976 1.06280 1.23030 1.01952 1.00077 0.94462 1.23216 1.03304 1.03191 0.94612 0.74571 0.84953 0.86573 0.84231 0.84875 0.83352 0.86748 0.91758 0.86345 0.84463 0.83411 0.88788 0.86438 0.87829 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.70 19.25 74.32 1.43 -2.27 16 2 C -0.22 -4.06 13.10 31.13 0.41 -3.65 16 3 C 0.00 0.02 5.41 28.79 0.16 0.18 16 4 C 0.12 2.24 2.38 30.59 0.07 2.32 16 5 H 0.06 1.60 7.15 -2.38 -0.02 1.59 16 6 O -0.35 -7.38 8.15 -51.41 -0.42 -7.80 16 7 C 0.46 11.87 6.90 71.24 0.49 12.36 16 8 O -0.53 -18.10 13.08 21.98 0.29 -17.81 16 9 C -0.05 -1.11 5.94 29.10 0.17 -0.94 16 10 C -0.16 -4.94 4.38 -19.83 -0.09 -5.03 16 11 C -0.05 -1.76 9.69 22.25 0.22 -1.55 16 12 C -0.21 -9.08 9.99 22.39 0.22 -8.86 16 13 C 0.12 6.07 6.65 22.58 0.15 6.22 16 14 O -0.23 -14.32 9.76 -22.74 -0.22 -14.54 16 15 C -0.42 -24.97 9.49 67.92 0.64 -24.33 16 16 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 17 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 18 N -0.92 -57.57 13.67 21.61 0.30 -57.28 16 19 Si 1.02 43.76 29.55 68.60 2.03 45.79 16 20 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 C -0.24 -11.11 9.17 22.39 0.21 -10.91 16 24 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 25 C -0.17 -2.66 5.71 -10.80 -0.06 -2.72 16 26 C -0.16 -2.45 9.80 30.62 0.30 -2.15 16 27 C -0.21 -4.26 9.85 30.62 0.30 -3.96 16 28 H 0.24 2.65 7.80 -4.43 -0.03 2.62 16 29 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.14 2.12 8.08 -2.39 -0.02 2.10 16 32 H 0.13 2.20 8.08 -2.39 -0.02 2.18 16 33 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 37 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.15 1.43 8.11 -2.39 -0.02 1.41 16 39 H 0.09 1.57 6.91 -2.39 -0.02 1.55 16 40 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.08 2.18 5.37 -2.39 -0.01 2.17 16 Total: -1.00 -79.94 365.83 8.31 -71.63 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 1.03 Total: 27.92 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 5.31 Total: -47.91 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.30 Total: -57.28 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.35 Total: -40.15 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -79.94 8.31 -71.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079209284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.761 kcal (2) G-P(sol) polarization free energy of solvation -79.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds