Wall clock time and date at job start Tue Mar 31 2020 11:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35879 * 117.00460 * 2 1 4 4 C 1.39856 * 119.56750 * 0.02562 * 3 2 1 5 5 C 1.35979 * 120.93265 * 180.02562 * 4 3 2 6 6 C 1.40590 * 119.73412 * 359.97438 * 5 4 3 7 7 C 1.40525 * 121.22302 * 179.97438 * 6 5 4 8 8 C 1.36107 * 119.67011 * 180.02562 * 7 6 5 9 9 C 1.39368 * 120.99652 * 359.97438 * 8 7 6 10 10 C 1.36094 * 120.98033 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.17084 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47201 * 265.02297 * 11 10 9 13 13 O 1.20828 * 119.99820 * 359.97438 * 12 11 10 14 14 O 1.34226 * 120.00037 * 180.02562 * 12 11 10 15 15 C 1.45198 * 117.00017 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47178 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47376 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99663 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00145 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99741 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99884 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47048 * 60.00149 * 21 19 17 23 23 H 1.48503 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47166 * 299.99719 * 21 19 17 25 25 C 1.40574 * 119.65704 * 359.97438 * 10 9 8 26 26 C 1.36573 * 119.57261 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46597 * 59.99388 * 1 2 3 28 28 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46571 * 299.99621 * 1 2 3 30 30 H 1.07999 * 119.53162 * 0.02562 * 4 3 2 31 31 H 1.08005 * 120.12987 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.16492 * 359.75724 * 7 6 5 33 33 H 1.08006 * 119.49945 * 179.97438 * 8 7 6 34 34 H 1.08000 * 119.51103 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.46989 * 25.02279 * 11 10 9 36 36 H 1.09000 * 109.46520 * 145.02514 * 11 10 9 37 37 H 1.08998 * 109.47325 * 299.99678 * 15 14 12 38 38 H 1.09002 * 109.47243 * 60.00028 * 15 14 12 39 39 H 1.09005 * 109.47497 * 300.00211 * 16 15 14 40 40 H 1.08997 * 109.47231 * 60.00417 * 16 15 14 41 41 H 0.97004 * 119.99565 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.18583 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2106 0.0000 4 6 1.2756 2.3779 0.0005 5 6 1.8640 3.6038 0.0000 6 6 3.2663 3.7041 -0.0005 7 6 3.9070 4.9548 -0.0016 8 6 5.2668 5.0152 -0.0026 9 6 6.0368 3.8535 -0.0021 10 6 5.4513 2.6249 -0.0010 11 6 6.3016 1.3807 -0.0011 12 6 6.4822 0.8957 -1.4164 13 8 5.9723 1.4983 -2.3312 14 8 7.2086 -0.2063 -1.6607 15 6 7.3396 -0.6153 -3.0477 16 6 8.1960 -1.8806 -3.1275 17 6 8.3315 -2.3056 -4.5670 18 1 7.8549 -1.7304 -5.3470 19 6 9.0640 -3.4287 -4.8883 20 7 9.6447 -4.1288 -3.9385 21 14 9.2325 -3.9549 -6.6726 22 1 9.8818 -2.8688 -7.4498 23 1 10.0636 -5.1832 -6.7501 24 1 7.8868 -4.2309 -7.2365 25 6 4.0493 2.5226 0.0001 26 6 3.4104 1.2718 -0.0005 27 1 -0.3632 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 0.1981 2.3045 0.0014 31 1 1.2564 4.4967 0.0009 32 1 3.3235 5.8635 -0.0060 33 1 5.7564 5.9779 -0.0038 34 1 7.1141 3.9293 -0.0033 35 1 7.2757 1.6063 0.4328 36 1 5.8117 0.6060 0.5888 37 1 6.3519 -0.8180 -3.4616 38 1 7.8161 0.1820 -3.6182 39 1 9.1837 -1.6777 -2.7136 40 1 7.7199 -2.6781 -2.5570 41 1 10.1598 -4.9192 -4.1645 42 1 3.9947 0.3636 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178994670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:42 Heat of formation + Delta-G solvation = -110.504387 kcal Electronic energy + Delta-G solvation = -24886.344573 eV Core-core repulsion = 21181.537318 eV Total energy + Delta-G solvation = -3704.807255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96633 -41.21184 -39.88273 -37.76922 -36.58413 -35.46791 -34.77452 -32.44974 -31.47026 -30.77951 -29.14869 -27.78641 -26.91737 -24.45750 -23.59232 -23.48323 -22.56646 -21.28386 -19.38969 -19.02870 -18.25268 -18.09527 -17.83186 -17.60392 -17.15164 -16.69526 -16.60161 -16.47288 -15.65293 -15.25539 -15.14088 -14.59612 -14.58404 -14.41031 -14.23697 -14.09432 -13.88583 -13.37683 -13.31100 -13.05066 -12.95307 -12.73509 -12.60871 -12.57338 -12.41031 -12.05059 -11.89980 -11.68339 -11.57568 -11.52281 -11.49468 -11.33634 -10.69741 -10.62604 -9.35580 -8.65007 -8.28474 -6.42252 -0.47011 0.07322 0.97905 1.18969 1.39491 1.43496 1.51437 1.79701 2.07959 2.35296 2.39695 3.05510 3.13381 3.45374 3.70945 3.76583 3.91457 3.98658 4.10669 4.17788 4.22916 4.24089 4.25401 4.34343 4.37588 4.40358 4.46846 4.52991 4.66592 4.68096 4.78783 4.87852 5.03849 5.20025 5.22583 5.26824 5.28291 5.43991 5.54072 5.55285 5.59079 5.72826 5.74672 6.03258 6.04713 6.40427 6.69531 6.75728 7.27448 8.84020 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002883 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.743597 B = 9710.759844 C =10959.377636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.123 3.877 4 C -0.198 4.198 5 C -0.056 4.056 6 C -0.106 4.106 7 C -0.087 4.087 8 C -0.135 4.135 9 C -0.091 4.091 10 C -0.097 4.097 11 C -0.069 4.069 12 C 0.454 3.546 13 O -0.536 6.536 14 O -0.366 6.366 15 C 0.091 3.909 16 C 0.032 3.968 17 C -0.554 4.554 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.974 3.026 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.014 4.014 26 C -0.190 4.190 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.008 0.992 40 H 0.005 0.995 41 H 0.269 0.731 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.896 19.031 13.189 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.078 3.922 4 C -0.216 4.216 5 C -0.073 4.073 6 C -0.106 4.106 7 C -0.105 4.105 8 C -0.153 4.153 9 C -0.109 4.109 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.299 3.701 13 O -0.426 6.426 14 O -0.283 6.283 15 C 0.018 3.982 16 C -0.005 4.005 17 C -0.591 4.591 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.797 3.203 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.191 1.191 25 C -0.014 4.014 26 C -0.209 4.209 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.177 0.823 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.024 0.976 41 H 0.078 0.922 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.854 18.823 12.927 28.986 hybrid contribution 0.172 -0.849 -1.035 1.350 sum -17.682 17.974 11.892 27.877 Atomic orbital electron populations 1.23376 0.76206 1.05565 1.02563 1.86097 1.23863 1.27182 1.88607 1.18900 0.92089 0.85274 0.95976 1.21324 1.01533 0.91626 1.07155 1.21305 0.92855 0.98537 0.94648 1.18384 0.94364 0.93290 1.04585 1.21395 0.95291 0.96590 0.97191 1.21139 0.94251 0.98968 1.00915 1.21101 1.01355 0.91669 0.96749 1.19146 0.92074 0.94507 1.03954 1.20420 1.03980 0.97079 0.89119 1.24356 0.74444 0.77720 0.93603 1.90625 1.46863 1.56915 1.48207 1.86514 1.65891 1.43000 1.32885 1.23122 1.00008 0.97671 0.77373 1.18970 0.94089 0.90578 0.96868 1.21347 1.33497 1.11685 0.92619 0.91854 1.25974 0.94454 0.95956 1.02844 1.70090 1.33719 1.17886 1.34811 0.85367 0.78653 0.77883 0.78353 1.18974 1.20252 1.19123 1.17753 0.93107 0.92542 0.97975 1.20231 0.92789 0.97610 1.10250 0.91627 0.86812 0.90794 0.82287 0.81318 0.82172 0.82878 0.84162 0.83711 0.85711 0.92840 0.92264 0.97311 0.97636 0.92247 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.80 113.37 1.11 1.35 16 2 O -0.34 -8.62 10.47 -92.19 -0.97 -9.59 16 3 C 0.12 3.18 6.63 22.27 0.15 3.32 16 4 C -0.20 -3.73 8.93 22.14 0.20 -3.54 16 5 C -0.06 -0.97 9.76 22.32 0.22 -0.75 16 6 C -0.11 -2.37 5.74 -21.28 -0.12 -2.49 16 7 C -0.09 -1.50 9.77 22.33 0.22 -1.28 16 8 C -0.14 -2.38 9.95 22.05 0.22 -2.16 16 9 C -0.09 -1.97 9.57 22.04 0.21 -1.76 16 10 C -0.10 -2.55 4.38 -19.79 -0.09 -2.63 16 11 C -0.07 -1.82 5.34 29.10 0.16 -1.67 16 12 C 0.45 16.88 7.95 71.23 0.57 17.45 16 13 O -0.54 -23.02 15.78 21.96 0.35 -22.67 16 14 O -0.37 -15.60 10.22 -51.38 -0.53 -16.12 16 15 C 0.09 4.38 5.40 71.98 0.39 4.77 16 16 C 0.03 1.79 5.35 29.85 0.16 1.95 16 17 C -0.55 -32.42 9.11 25.60 0.23 -32.18 16 18 H 0.06 3.56 7.74 -2.91 -0.02 3.53 16 19 C 0.01 0.40 5.46 84.66 0.46 0.86 16 20 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 21 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C -0.01 -0.38 5.74 -21.30 -0.12 -0.50 16 26 C -0.19 -5.62 9.19 22.42 0.21 -5.41 16 27 H 0.07 0.77 7.63 -2.39 -0.02 0.75 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 0.73 7.63 -2.39 -0.02 0.71 16 30 H 0.16 1.88 6.21 -2.91 -0.02 1.87 16 31 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.14 2.46 8.05 -2.91 -0.02 2.44 16 35 H 0.15 2.86 8.04 -2.39 -0.02 2.85 16 36 H 0.13 2.99 6.70 -2.39 -0.02 2.98 16 37 H 0.05 2.58 8.13 -2.39 -0.02 2.56 16 38 H 0.06 2.79 8.13 -2.39 -0.02 2.77 16 39 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.11 3.60 6.48 -2.91 -0.02 3.58 16 Total: -1.00 -77.32 360.37 6.36 -70.96 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.03 Total: 11.78 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.16 Total: -24.67 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.17 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -1.14 Total: -48.38 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -77.32 6.36 -70.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178994670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.548 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds