Wall clock time and date at job start Tue Mar 31 2020 11:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99803 * 2 1 4 4 H 1.48501 * 109.46854 * 269.99736 * 3 2 1 5 5 H 1.48498 * 109.47384 * 29.99463 * 3 2 1 6 6 H 1.48499 * 109.46952 * 150.00024 * 3 2 1 7 7 C 1.37878 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00147 * 0.02562 * 7 2 1 10 10 O 1.42899 * 113.01485 * 48.33240 * 9 7 2 11 11 C 1.53949 * 113.74102 * 276.67178 * 9 7 2 12 12 N 1.47573 * 86.11727 * 222.04621 * 11 9 7 13 13 C 1.34780 * 134.49478 * 204.63784 * 12 11 9 14 14 O 1.21284 * 119.99915 * 179.97438 * 13 12 11 15 15 C 1.50699 * 119.99668 * 0.02562 * 13 12 11 16 16 C 1.52997 * 109.46927 * 179.97438 * 15 13 12 17 17 N 1.46504 * 109.47117 * 179.97438 * 16 15 13 18 18 C 1.36822 * 125.06634 * 264.70423 * 17 16 15 19 19 C 1.34238 * 109.92959 * 179.81510 * 18 17 16 20 20 C 1.46491 * 106.99740 * 0.43212 * 19 18 17 21 21 C 1.39628 * 134.03218 * 179.76042 * 20 19 18 22 22 C 1.36624 * 119.76623 * 179.97438 * 21 20 19 23 23 C 1.38834 * 120.52512 * 0.02562 * 22 21 20 24 24 C 1.37751 * 120.66734 * 359.97438 * 23 22 21 25 25 C 1.37694 * 125.05527 * 85.00556 * 17 16 15 26 26 C 1.47583 * 91.01675 * 24.64206 * 12 11 9 27 27 H 0.96996 * 120.00156 * 0.02562 * 1 2 3 28 28 H 0.96696 * 114.00337 * 311.66569 * 10 9 7 29 29 H 1.09003 * 113.76687 * 336.34975 * 11 9 7 30 30 H 1.09004 * 113.76847 * 107.74113 * 11 9 7 31 31 H 1.08997 * 109.47102 * 299.99877 * 15 13 12 32 32 H 1.09010 * 109.47090 * 60.00158 * 15 13 12 33 33 H 1.08997 * 109.47535 * 300.00109 * 16 15 13 34 34 H 1.09005 * 109.47109 * 60.00234 * 16 15 13 35 35 H 1.07998 * 125.03780 * 359.96972 * 18 17 16 36 36 H 1.08007 * 126.50299 * 180.14385 * 19 18 17 37 37 H 1.08006 * 120.11451 * 0.02562 * 21 20 19 38 38 H 1.07998 * 119.73953 * 180.02562 * 22 21 20 39 39 H 1.07992 * 119.66502 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.10970 * 180.02562 * 24 23 22 41 41 H 1.08996 * 113.77114 * 221.06092 * 26 12 11 42 42 H 1.08993 * 113.87279 * 89.67246 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.2149 -2.5461 -0.9824 11 6 0.7988 -2.9538 1.4001 12 7 1.2204 -4.3064 0.9871 13 6 0.8820 -5.5564 1.3604 14 8 1.4092 -6.5113 0.8300 15 6 -0.1523 -5.7676 2.4359 16 6 -0.3494 -7.2672 2.6663 17 7 -1.3545 -7.4725 3.7123 18 6 -1.0801 -7.6716 5.0379 19 6 -2.2239 -7.8214 5.7244 20 6 -3.3200 -7.7194 4.7579 21 6 -4.7108 -7.7945 4.8563 22 6 -5.4786 -7.6540 3.7350 23 6 -4.8871 -7.4376 2.4978 24 6 -3.5170 -7.3601 2.3780 25 6 -2.7157 -7.4997 3.5068 26 6 2.1616 -3.7405 0.0011 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3594 -1.7681 -0.9860 29 1 1.3951 -2.5364 2.2116 30 1 -0.2742 -2.8598 1.5672 31 1 0.1841 -5.2986 3.3605 32 1 -1.0967 -5.3210 2.1245 33 1 -0.6860 -7.7358 1.7416 34 1 0.5948 -7.7142 2.9775 35 1 -0.0901 -7.7012 5.4685 36 1 -2.3180 -7.9902 6.7871 37 1 -5.1779 -7.9622 5.8156 38 1 -6.5543 -7.7117 3.8117 39 1 -5.5073 -7.3289 1.6205 40 1 -3.0663 -7.1911 1.4112 41 1 2.1766 -4.2747 -0.9488 42 1 3.1587 -3.5538 0.3998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186818244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:28 Heat of formation + Delta-G solvation = 11.192740 kcal Electronic energy + Delta-G solvation = -25246.585199 eV Core-core repulsion = 21579.347878 eV Total energy + Delta-G solvation = -3667.237320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36502 -39.62239 -37.68259 -37.02148 -34.03984 -33.74049 -32.26073 -31.17478 -29.56500 -28.88804 -28.09723 -25.61035 -25.34461 -23.76883 -22.55315 -21.50918 -20.26303 -19.98347 -18.36145 -17.60429 -17.15287 -16.49997 -16.09315 -15.70321 -15.44953 -15.40809 -15.13994 -14.46458 -14.24131 -14.09603 -13.83599 -13.59549 -13.05077 -12.96200 -12.72176 -12.60092 -12.39483 -12.24965 -12.02800 -11.68270 -11.62777 -11.33250 -11.25110 -11.13468 -11.10919 -10.85676 -10.56958 -10.35330 -9.79710 -9.67910 -9.30499 -8.82896 -8.50613 -8.20754 -7.95663 -7.68626 -6.45404 -4.56283 1.11245 1.61514 2.63954 2.73215 3.03144 3.11053 3.19366 3.21489 3.50201 3.91139 4.13604 4.61203 4.64107 4.76170 4.78313 4.81544 4.94804 5.01579 5.11645 5.32763 5.37827 5.42408 5.53067 5.57882 5.71094 5.75203 5.84016 5.88931 5.90655 6.04605 6.08528 6.29329 6.41931 6.44970 6.51857 6.58891 6.59513 6.73714 6.78190 7.02623 7.21028 7.26399 7.57218 7.74230 8.35646 8.47113 8.58350 9.15351 9.39448 10.61142 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.002921 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.999761 B = 9584.081014 C =10139.158637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.573 6.573 11 C 0.075 3.925 12 N -0.629 5.629 13 C 0.532 3.468 14 O -0.568 6.568 15 C -0.151 4.151 16 C 0.128 3.872 17 N -0.481 5.481 18 C 0.055 3.945 19 C -0.211 4.211 20 C -0.111 4.111 21 C -0.075 4.075 22 C -0.149 4.149 23 C -0.102 4.102 24 C -0.125 4.125 25 C 0.098 3.902 26 C 0.111 3.889 27 H 0.274 0.726 28 H 0.393 0.607 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -11.041 9.695 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.386 6.386 11 C -0.047 4.047 12 N -0.362 5.362 13 C 0.321 3.679 14 O -0.450 6.450 15 C -0.192 4.192 16 C 0.006 3.994 17 N -0.164 5.164 18 C -0.070 4.070 19 C -0.236 4.236 20 C -0.116 4.116 21 C -0.093 4.093 22 C -0.168 4.168 23 C -0.121 4.121 24 C -0.145 4.145 25 C -0.008 4.008 26 C -0.011 4.011 27 H 0.084 0.916 28 H 0.249 0.751 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.184 0.816 36 H 0.162 0.838 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.089 0.911 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.664 -12.117 9.112 16.184 hybrid contribution 0.178 1.581 0.288 1.617 sum -5.485 -10.536 9.400 15.147 Atomic orbital electron populations 1.69307 1.06194 1.28280 1.50032 1.25077 0.95031 0.99940 0.92984 0.86320 0.79742 0.81888 0.78522 1.20210 1.20877 1.19553 1.21504 0.93957 0.89927 1.52260 0.91004 1.19825 0.85396 0.91228 0.83773 1.86051 1.46171 1.48993 1.57393 1.24372 1.00086 0.77524 1.02742 1.50177 1.41676 1.04668 1.39637 1.19847 0.83107 0.81902 0.83057 1.90651 1.56866 1.40154 1.57311 1.21911 1.00403 0.97328 0.99532 1.21497 0.91470 0.95628 0.90771 1.44124 1.04318 1.60623 1.07315 1.21853 0.99838 1.02915 0.82424 1.21635 0.90380 1.12944 0.98600 1.19232 0.93424 1.06247 0.92660 1.20231 0.91313 0.99320 0.98478 1.20605 0.99524 1.04071 0.92619 1.20804 0.93507 1.00091 0.97745 1.20124 0.93175 1.05048 0.96187 1.18300 0.83023 1.03719 0.95760 1.23487 0.93775 0.92546 0.91251 0.91556 0.75071 0.89900 0.91323 0.88728 0.88577 0.88803 0.88393 0.81575 0.83751 0.86328 0.86265 0.85854 0.86245 0.91072 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.25 11.08 55.43 0.61 -21.64 16 2 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 3 Si 0.91 19.04 29.54 -169.99 -5.02 14.02 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.54 -13.14 8.62 -34.44 -0.30 -13.44 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.57 1.45 -90.84 -0.13 5.44 16 10 O -0.57 -14.43 13.50 -35.23 -0.48 -14.90 16 11 C 0.08 1.56 8.00 -2.98 -0.02 1.53 16 12 N -0.63 -12.69 3.61 -178.33 -0.64 -13.33 16 13 C 0.53 10.02 8.06 -10.98 -0.09 9.93 16 14 O -0.57 -12.06 16.71 5.55 0.09 -11.96 16 15 C -0.15 -2.21 5.77 -27.88 -0.16 -2.37 16 16 C 0.13 1.67 5.29 -4.04 -0.02 1.65 16 17 N -0.48 -6.19 2.78 -114.43 -0.32 -6.51 16 18 C 0.06 0.61 11.27 -16.74 -0.19 0.42 16 19 C -0.21 -2.40 11.08 -37.67 -0.42 -2.82 16 20 C -0.11 -1.46 6.37 -105.14 -0.67 -2.13 16 21 C -0.07 -0.86 10.05 -39.65 -0.40 -1.26 16 22 C -0.15 -1.62 9.97 -39.94 -0.40 -2.02 16 23 C -0.10 -1.18 10.01 -39.54 -0.40 -1.57 16 24 C -0.12 -1.64 10.00 -39.43 -0.39 -2.03 16 25 C 0.10 1.36 6.81 -83.99 -0.57 0.78 16 26 C 0.11 2.35 8.23 -2.97 -0.02 2.32 16 27 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.39 10.02 6.42 45.56 0.29 10.31 16 29 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.10 1.46 8.14 -51.92 -0.42 1.03 16 33 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 34 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -28.55 360.72 -9.75 -38.30 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.16 Total: 14.46 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -4.28 Total: -3.89 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.35 Total: -41.47 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.38 Total: -26.86 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.55 -9.75 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186818244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.495 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds