Wall clock time and date at job start Tue Mar 31 2020 11:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48495 * 109.47550 * 89.99775 * 3 2 1 5 5 H 1.48511 * 109.47116 * 209.99923 * 3 2 1 6 6 H 1.48499 * 109.47060 * 329.99353 * 3 2 1 7 7 C 1.37883 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 5.23736 * 7 2 1 9 9 C 1.50704 * 119.99782 * 185.23007 * 7 2 1 10 10 O 1.42891 * 112.94610 * 52.32111 * 9 7 2 11 11 C 1.53945 * 113.73960 * 280.58000 * 9 7 2 12 12 N 1.47582 * 86.11797 * 222.05041 * 11 9 7 13 13 C 1.34776 * 134.49131 * 204.64457 * 12 11 9 14 14 O 1.21281 * 119.99710 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00331 * 359.97438 * 13 12 11 16 16 C 1.52997 * 109.47129 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46904 * 180.02562 * 16 15 13 18 18 C 1.38837 * 119.73555 * 269.72219 * 17 16 15 19 19 C 1.37744 * 120.66808 * 179.75828 * 18 17 16 20 20 C 1.39127 * 119.77688 * 0.51894 * 19 18 17 21 21 N 1.37691 * 133.51000 * 179.76339 * 20 19 18 22 22 H 0.96996 * 125.06043 * 0.02562 * 21 20 19 23 23 C 1.36830 * 109.87583 * 179.97438 * 21 20 19 24 24 C 1.34237 * 109.92900 * 0.02562 * 23 21 20 25 25 C 1.40672 * 119.33502 * 359.74299 * 20 19 18 26 26 C 1.36624 * 119.73710 * 90.00435 * 17 16 15 27 27 C 1.47579 * 91.01427 * 24.64505 * 12 11 9 28 28 H 0.97008 * 119.99681 * 174.95530 * 1 2 3 29 29 H 0.96707 * 113.99791 * 304.09314 * 10 9 7 30 30 H 1.09003 * 113.77282 * 336.35677 * 11 9 7 31 31 H 1.09009 * 113.76274 * 107.75196 * 11 9 7 32 32 H 1.08998 * 109.46957 * 300.00592 * 15 13 12 33 33 H 1.09008 * 109.46933 * 60.00266 * 15 13 12 34 34 H 1.08998 * 109.47688 * 300.00148 * 16 15 13 35 35 H 1.08999 * 109.46959 * 60.00488 * 16 15 13 36 36 H 1.07999 * 119.66363 * 0.03180 * 18 17 16 37 37 H 1.07995 * 120.11730 * 180.28211 * 19 18 17 38 38 H 1.08002 * 125.03465 * 180.02562 * 23 21 20 39 39 H 1.08002 * 126.50166 * 180.02562 * 24 23 21 40 40 H 1.07996 * 120.11844 * 359.97438 * 26 17 16 41 41 H 1.08998 * 113.77112 * 221.06054 * 27 12 11 42 42 H 1.09000 * 113.87384 * 89.66748 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4680 -2.1275 -0.0844 9 6 3.5069 -1.1967 0.1195 10 8 3.9785 -0.4412 1.2369 11 6 4.2336 -0.8768 -1.1994 12 7 5.1662 -1.9598 -0.8316 13 6 6.4458 -2.2496 -1.1399 14 8 6.9722 -3.2389 -0.6760 15 6 7.2223 -1.3451 -2.0618 16 6 8.6376 -1.8967 -2.2447 17 6 9.4142 -0.9918 -3.1662 18 6 9.4000 -1.2263 -4.5345 19 6 10.0989 -0.4084 -5.3947 20 6 10.8359 0.6577 -4.8888 21 7 11.6224 1.6270 -5.4699 22 1 11.7910 1.7111 -6.4214 23 6 12.1297 2.4544 -4.5055 24 6 11.7024 2.0620 -3.2949 25 6 10.8513 0.8878 -3.5011 26 6 10.1312 0.0492 -2.6478 27 6 4.1349 -2.5980 0.0092 28 1 -0.4850 -0.8369 -0.0739 29 1 3.6757 0.4772 1.2467 30 1 3.6421 -1.0897 -2.0898 31 1 4.6935 0.1113 -1.2190 32 1 6.7227 -1.2971 -3.0293 33 1 7.2753 -0.3455 -1.6303 34 1 9.1369 -1.9444 -1.2770 35 1 8.5849 -2.8964 -2.6760 36 1 8.8318 -2.0557 -4.9289 37 1 10.0780 -0.5962 -6.4580 38 1 12.7779 3.2982 -4.6907 39 1 11.9402 2.5249 -2.3486 40 1 10.1409 0.2230 -1.5820 41 1 4.5159 -2.9842 0.9546 42 1 3.5135 -3.3171 -0.5245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186843756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:28 Heat of formation + Delta-G solvation = 10.738263 kcal Electronic energy + Delta-G solvation = -24968.090061 eV Core-core repulsion = 21300.833033 eV Total energy + Delta-G solvation = -3667.257028 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37268 -39.76983 -38.07742 -37.26133 -34.37393 -33.16400 -32.61326 -31.99696 -29.59580 -28.91162 -28.16323 -25.79755 -25.07487 -23.73899 -22.67081 -21.21069 -20.44347 -19.91819 -18.49566 -18.23134 -17.98336 -16.68082 -16.28160 -15.96741 -15.56985 -15.17630 -14.82330 -14.61624 -14.56279 -14.13697 -13.76533 -13.48910 -13.37519 -13.26225 -12.80453 -12.76572 -12.46696 -12.32285 -12.13864 -11.97954 -11.44988 -11.34839 -11.26207 -11.10977 -10.78420 -10.75761 -10.38452 -9.93239 -9.90735 -9.49400 -9.37526 -9.00212 -8.54457 -8.26550 -8.00034 -7.87416 -6.71173 -4.47388 0.98978 1.46917 2.52529 2.90787 3.09955 3.11093 3.14369 3.31309 3.42737 3.78276 4.17128 4.50862 4.62681 4.68259 4.79248 4.93221 5.08481 5.13823 5.18560 5.22839 5.29738 5.36741 5.46215 5.60145 5.65965 5.73805 5.80171 5.89807 6.02891 6.03566 6.10550 6.24071 6.27319 6.29331 6.34726 6.48649 6.52592 6.58849 6.62764 6.68720 7.01299 7.28702 7.50206 8.06639 8.33577 8.47563 8.59575 8.66174 9.28100 10.64529 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.002912 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.476055 B = 9612.991024 C =10489.695655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.034 3.966 3 Si 1.031 2.969 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.280 1.280 7 C -0.610 4.610 8 H 0.071 0.929 9 C 0.196 3.804 10 O -0.554 6.554 11 C 0.060 3.940 12 N -0.635 5.635 13 C 0.528 3.472 14 O -0.562 6.562 15 C -0.128 4.128 16 C -0.058 4.058 17 C -0.103 4.103 18 C -0.090 4.090 19 C -0.131 4.131 20 C 0.089 3.911 21 N -0.599 5.599 22 H 0.413 0.587 23 C 0.045 3.955 24 C -0.204 4.204 25 C -0.108 4.108 26 C -0.067 4.067 27 C 0.126 3.874 28 H 0.274 0.726 29 H 0.354 0.646 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.168 0.832 39 H 0.146 0.854 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.218 5.048 -12.000 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.174 4.174 3 Si 0.860 3.140 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.648 4.648 8 H 0.090 0.910 9 C 0.155 3.845 10 O -0.364 6.364 11 C -0.063 4.063 12 N -0.369 5.369 13 C 0.318 3.682 14 O -0.442 6.442 15 C -0.168 4.168 16 C -0.096 4.096 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.152 4.152 20 C -0.018 4.018 21 N -0.203 5.203 22 H 0.250 0.750 23 C -0.081 4.081 24 C -0.229 4.229 25 C -0.113 4.113 26 C -0.085 4.085 27 C 0.004 3.996 28 H 0.084 0.916 29 H 0.204 0.796 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.186 0.814 39 H 0.163 0.837 40 H 0.141 0.859 41 H 0.091 0.909 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.802 5.596 -11.715 25.375 hybrid contribution -0.114 -0.951 -0.820 1.261 sum 21.687 4.645 -12.535 25.476 Atomic orbital electron populations 1.70769 1.06681 1.31263 1.43764 1.25821 0.96525 1.02481 0.92529 0.84298 0.75794 0.76108 0.77807 1.20236 1.19275 1.20609 1.22278 0.89634 0.96156 1.56685 0.91048 1.20520 0.93205 0.88678 0.82091 1.86459 1.76329 1.25646 1.47950 1.24719 0.89035 0.90178 1.02361 1.50178 1.09592 1.28787 1.48336 1.20287 0.80854 0.85706 0.81325 1.90640 1.69114 1.29214 1.55263 1.21574 0.95512 0.99830 0.99880 1.20267 0.92774 0.97576 0.99006 1.19415 0.99660 0.97329 0.94036 1.20764 0.98667 0.98971 0.92527 1.19984 1.00490 0.95207 0.99481 1.18278 0.97524 0.93237 0.92715 1.41778 1.43511 1.25933 1.09030 0.75033 1.21790 1.01318 0.96928 0.88044 1.21733 1.04433 0.99183 0.97539 1.19211 1.01776 0.98093 0.92193 1.20203 0.95658 0.93524 0.99150 1.23227 0.85754 0.96795 0.93838 0.91599 0.79575 0.89019 0.90920 0.89227 0.89166 0.90350 0.90397 0.85615 0.86365 0.81436 0.83670 0.85917 0.90856 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.70 55.43 0.76 -24.60 16 2 C 0.03 0.89 5.47 -17.82 -0.10 0.79 16 3 Si 1.03 21.99 24.79 -169.99 -4.21 17.78 16 4 H -0.28 -5.59 6.95 56.52 0.39 -5.20 16 5 H -0.27 -5.02 4.86 56.52 0.27 -4.75 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.61 -15.76 9.04 -34.44 -0.31 -16.07 16 8 H 0.07 1.97 8.04 -52.49 -0.42 1.55 16 9 C 0.20 4.48 1.06 -90.84 -0.10 4.38 16 10 O -0.55 -12.93 13.42 -35.23 -0.47 -13.40 16 11 C 0.06 1.19 6.78 -2.97 -0.02 1.17 16 12 N -0.63 -12.75 3.61 -178.30 -0.64 -13.40 16 13 C 0.53 10.06 8.06 -10.99 -0.09 9.97 16 14 O -0.56 -12.26 16.71 5.56 0.09 -12.17 16 15 C -0.13 -1.86 5.43 -27.89 -0.15 -2.01 16 16 C -0.06 -0.77 4.62 -27.88 -0.13 -0.90 16 17 C -0.10 -1.25 5.10 -104.98 -0.54 -1.78 16 18 C -0.09 -0.98 9.66 -39.54 -0.38 -1.37 16 19 C -0.13 -1.33 10.08 -39.43 -0.40 -1.73 16 20 C 0.09 0.96 7.28 -83.98 -0.61 0.35 16 21 N -0.60 -4.72 6.07 -10.65 -0.06 -4.79 16 22 H 0.41 1.95 8.96 -40.82 -0.37 1.59 16 23 C 0.05 0.34 11.82 -16.73 -0.20 0.14 16 24 C -0.20 -1.97 11.08 -37.67 -0.42 -2.38 16 25 C -0.11 -1.28 6.37 -105.14 -0.67 -1.95 16 26 C -0.07 -0.81 9.67 -39.64 -0.38 -1.19 16 27 C 0.13 2.69 8.23 -2.97 -0.02 2.66 16 28 H 0.27 7.74 8.72 -40.82 -0.36 7.39 16 29 H 0.35 7.61 4.23 45.56 0.19 7.81 16 30 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 31 H 0.07 1.34 6.54 -51.92 -0.34 1.00 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 34 H 0.08 1.08 8.03 -51.93 -0.42 0.67 16 35 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -32.56 350.39 -9.05 -41.61 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.28 Total: 13.60 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -4.51 Total: -9.93 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.05 Total: -42.78 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.38 Total: -25.57 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.21 Total: 17.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.56 -9.05 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186843756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.350 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds