Wall clock time and date at job start Tue Mar 31 2020 10:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46787 * 2 1 4 4 H 1.09002 * 109.47523 * 305.00071 * 3 2 1 5 5 C 1.50702 * 109.47095 * 185.00307 * 3 2 1 6 6 H 1.08002 * 120.00059 * 240.00705 * 5 3 2 7 7 C 1.37883 * 120.00136 * 60.00003 * 5 3 2 8 8 N 1.31514 * 119.99377 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00268 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47522 * 89.99831 * 9 7 5 11 11 H 1.48501 * 109.47263 * 210.00232 * 9 7 5 12 12 H 1.48502 * 109.47096 * 329.99957 * 9 7 5 13 13 O 1.45197 * 109.47075 * 65.00704 * 3 2 1 14 14 C 1.34837 * 116.99934 * 269.99607 * 13 3 2 15 15 O 1.21578 * 119.99613 * 359.97438 * 14 13 3 16 16 C 1.46944 * 120.00165 * 180.02562 * 14 13 3 17 17 C 1.39194 * 120.57124 * 354.24953 * 16 14 13 18 18 C 1.38371 * 120.67419 * 179.77088 * 17 16 14 19 19 C 1.37951 * 121.62819 * 0.48956 * 18 17 16 20 20 O 1.35523 * 119.78580 * 179.74816 * 19 18 17 21 21 C 1.42899 * 116.99812 * 0.02562 * 20 19 18 22 22 C 1.41116 * 120.42586 * 359.76902 * 19 18 17 23 23 C 1.40381 * 121.29423 * 179.97438 * 22 19 18 24 24 C 1.36235 * 119.65000 * 180.02562 * 23 22 19 25 25 C 1.39228 * 120.95848 * 0.04539 * 24 23 22 26 26 C 1.36349 * 120.87964 * 359.95148 * 25 24 23 27 27 C 1.39980 * 119.63009 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47491 * 59.99878 * 1 2 3 29 29 H 1.08996 * 109.47054 * 299.99524 * 1 2 3 30 30 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47491 * 120.00122 * 2 1 3 32 32 H 1.09008 * 109.46899 * 240.00762 * 2 1 3 33 33 H 0.97004 * 119.99578 * 179.97438 * 8 7 5 34 34 H 1.07998 * 119.66264 * 359.97438 * 17 16 14 35 35 H 1.07995 * 119.18682 * 180.23962 * 18 17 16 36 36 H 1.08997 * 109.47131 * 300.00265 * 21 20 19 37 37 H 1.09002 * 109.46682 * 60.00067 * 21 20 19 38 38 H 1.09000 * 109.47096 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.17526 * 0.05275 * 23 22 19 40 40 H 1.07997 * 119.52360 * 180.02562 * 24 23 22 41 41 H 1.07998 * 119.55924 * 179.97438 * 25 24 23 42 42 H 1.08007 * 120.18585 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1734 9 14 6.0048 0.8802 -1.3814 10 1 6.5539 -0.3518 -0.7601 11 1 6.3833 0.9217 -2.8168 12 1 6.5574 2.0721 -0.6892 13 8 1.6559 2.0916 1.2408 14 6 0.4674 2.7282 1.2562 15 8 -0.2285 2.7406 0.2594 16 6 0.0138 3.4079 2.4775 17 6 0.7427 3.3027 3.6586 18 6 0.3200 3.9457 4.8086 19 6 -0.8343 4.7007 4.8326 20 8 -1.2161 5.3105 5.9812 21 6 -0.3764 5.1277 7.1229 22 6 -1.6202 4.8420 3.6691 23 6 -2.7982 5.6055 3.6732 24 6 -3.5318 5.7188 2.5308 25 6 -3.1310 5.0870 1.3566 26 6 -1.9922 4.3382 1.3185 27 6 -1.2148 4.2014 2.4745 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8291 -0.0602 -2.9504 34 1 1.6491 2.7158 3.6768 35 1 0.9061 3.8508 5.7107 36 1 -0.3138 4.0660 7.3616 37 1 0.6208 5.5105 6.9054 38 1 -0.7953 5.6674 7.9721 39 1 -3.1211 6.1007 4.5770 40 1 -4.4375 6.3070 2.5360 41 1 -3.7299 5.1918 0.4640 42 1 -1.6915 3.8533 0.4014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187993414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:50 Heat of formation + Delta-G solvation = -80.838269 kcal Electronic energy + Delta-G solvation = -25875.269997 eV Core-core repulsion = 22171.749161 eV Total energy + Delta-G solvation = -3703.520836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80647 -39.46595 -38.51277 -35.93650 -35.61854 -33.46085 -32.01781 -31.31397 -30.45090 -29.11039 -27.79164 -27.12056 -24.06800 -23.22698 -22.83795 -22.47515 -20.62456 -19.59197 -18.25787 -17.57455 -17.13288 -16.85167 -16.20733 -16.05867 -15.74813 -15.18314 -15.10802 -14.57783 -14.32682 -13.81398 -13.47183 -13.34228 -13.18760 -12.92348 -12.80928 -12.54917 -12.06546 -11.98374 -11.84013 -11.46746 -11.37648 -11.28557 -11.12304 -10.98143 -10.83578 -10.81712 -10.62479 -10.25654 -9.74883 -9.46527 -9.41514 -9.25391 -8.78957 -8.71805 -8.44209 -7.58786 -6.17725 -4.24578 0.33472 1.01314 1.84173 2.77417 2.90629 3.24795 3.30349 3.33810 3.49901 3.67035 4.18839 4.33993 4.58118 4.64167 4.82436 4.87495 4.96676 5.01850 5.11451 5.14264 5.18272 5.28206 5.41277 5.56295 5.59125 5.93572 6.07588 6.16177 6.21547 6.26609 6.33089 6.34159 6.38898 6.48269 6.62320 6.70152 6.90119 6.95941 7.04008 7.11945 7.19479 7.32454 7.63380 7.75685 7.97693 8.17421 8.65514 8.90620 9.40487 10.89047 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.003623 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.301781 B = 7727.124112 C = 8710.175908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.351 6.351 14 C 0.506 3.494 15 O -0.514 6.514 16 C -0.151 4.151 17 C -0.008 4.008 18 C -0.239 4.239 19 C 0.171 3.829 20 O -0.309 6.309 21 C 0.024 3.976 22 C -0.081 4.081 23 C -0.089 4.089 24 C -0.130 4.130 25 C -0.106 4.106 26 C -0.117 4.117 27 C 0.021 3.979 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.266 0.734 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 8.874 15.194 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.267 6.267 14 C 0.352 3.648 15 O -0.407 6.407 16 C -0.152 4.152 17 C -0.026 4.026 18 C -0.258 4.258 19 C 0.124 3.876 20 O -0.222 6.222 21 C -0.071 4.071 22 C -0.081 4.081 23 C -0.107 4.107 24 C -0.148 4.148 25 C -0.124 4.124 26 C -0.134 4.134 27 C 0.021 3.979 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.569 8.875 14.751 20.200 hybrid contribution 1.153 -0.224 -0.011 1.175 sum -9.415 8.651 14.739 19.513 Atomic orbital electron populations 1.21862 0.98322 0.98994 1.00851 1.22022 0.92690 0.99323 1.03316 1.20692 0.94963 0.88742 0.78601 0.93351 1.21041 0.89675 1.38945 1.06250 0.91361 1.24874 0.99172 0.94792 0.95060 1.69892 1.35337 1.37831 1.09452 0.86295 0.83980 0.78644 0.77348 1.20381 1.20981 1.19650 1.86548 1.33498 1.62496 1.44176 1.20545 0.80856 0.76511 0.86904 1.90598 1.55146 1.59210 1.35736 1.20189 0.97228 1.04451 0.93329 1.21307 0.97579 0.93425 0.90278 1.20926 0.98954 1.05414 1.00545 1.19179 0.92326 0.90675 0.85379 1.85942 1.50333 1.68394 1.17500 1.23157 0.95199 1.02424 0.86304 1.17303 0.97077 1.02811 0.90915 1.20855 0.93440 0.97701 0.98744 1.20865 1.00223 1.00694 0.93061 1.21078 0.96759 0.96550 0.98009 1.22066 0.93803 0.97828 0.99688 1.18574 0.92734 0.94048 0.92558 0.92753 0.94851 0.94887 0.94030 0.87341 0.92404 0.83675 0.84830 0.92136 0.92113 0.88028 0.85196 0.86000 0.85733 0.81286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.56 37.16 0.32 -2.84 16 2 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.88 2.25 -27.88 -0.06 5.82 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.49 8.90 -34.44 -0.31 -14.80 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.93 11.29 55.43 0.63 -24.30 16 9 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 O -0.35 -8.34 9.08 -40.87 -0.37 -8.72 16 14 C 0.51 10.93 6.31 34.26 0.22 11.15 16 15 O -0.51 -11.76 10.74 -19.33 -0.21 -11.97 16 16 C -0.15 -2.71 6.05 -102.80 -0.62 -3.34 16 17 C -0.01 -0.12 9.59 -39.18 -0.38 -0.49 16 18 C -0.24 -3.01 8.95 -39.64 -0.35 -3.37 16 19 C 0.17 2.22 6.70 -38.60 -0.26 1.96 16 20 O -0.31 -3.32 9.67 -18.26 -0.18 -3.50 16 21 C 0.02 0.16 9.79 101.05 0.99 1.15 16 22 C -0.08 -1.17 5.75 -106.76 -0.61 -1.78 16 23 C -0.09 -1.10 9.56 -39.50 -0.38 -1.48 16 24 C -0.13 -1.50 9.95 -39.93 -0.40 -1.90 16 25 C -0.11 -1.38 9.96 -39.89 -0.40 -1.78 16 26 C -0.12 -1.89 9.27 -39.61 -0.37 -2.25 16 27 C 0.02 0.35 5.90 -104.79 -0.62 -0.26 16 28 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 29 H 0.03 0.72 6.06 -51.93 -0.31 0.40 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.11 2.91 5.95 -51.92 -0.31 2.60 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 34 H 0.15 2.14 7.61 -52.49 -0.40 1.74 16 35 H 0.13 1.26 6.14 -52.49 -0.32 0.94 16 36 H 0.06 0.36 7.63 -51.93 -0.40 -0.04 16 37 H 0.06 0.36 7.63 -51.93 -0.40 -0.03 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.13 1.34 7.60 -52.49 -0.40 0.94 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.17 3.06 5.04 -52.48 -0.26 2.80 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -30.79 345.17 -8.65 -39.44 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.24 Total: 4.01 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -3.47 Total: -16.10 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.76 Total: -24.18 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.79 -8.65 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187993414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.396 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds