Wall clock time and date at job start Tue Mar 31 2020 10:43:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.46787 * 2 1
4 4 H 1.09002 * 109.47523 * 305.00071 * 3 2 1
5 5 C 1.50702 * 109.47095 * 185.00307 * 3 2 1
6 6 H 1.08002 * 120.00059 * 240.00705 * 5 3 2
7 7 C 1.37883 * 120.00136 * 60.00003 * 5 3 2
8 8 N 1.31514 * 119.99377 * 0.02562 * 7 5 3
9 9 Si 1.86791 * 120.00268 * 180.02562 * 7 5 3
10 10 H 1.48501 * 109.47522 * 89.99831 * 9 7 5
11 11 H 1.48501 * 109.47263 * 210.00232 * 9 7 5
12 12 H 1.48502 * 109.47096 * 329.99957 * 9 7 5
13 13 O 1.45197 * 109.47075 * 65.00704 * 3 2 1
14 14 C 1.34837 * 116.99934 * 269.99607 * 13 3 2
15 15 O 1.21578 * 119.99613 * 359.97438 * 14 13 3
16 16 C 1.46944 * 120.00165 * 180.02562 * 14 13 3
17 17 C 1.39194 * 120.57124 * 354.24953 * 16 14 13
18 18 C 1.38371 * 120.67419 * 179.77088 * 17 16 14
19 19 C 1.37951 * 121.62819 * 0.48956 * 18 17 16
20 20 O 1.35523 * 119.78580 * 179.74816 * 19 18 17
21 21 C 1.42899 * 116.99812 * 0.02562 * 20 19 18
22 22 C 1.41116 * 120.42586 * 359.76902 * 19 18 17
23 23 C 1.40381 * 121.29423 * 179.97438 * 22 19 18
24 24 C 1.36235 * 119.65000 * 180.02562 * 23 22 19
25 25 C 1.39228 * 120.95848 * 0.04539 * 24 23 22
26 26 C 1.36349 * 120.87964 * 359.95148 * 25 24 23
27 27 C 1.39980 * 119.63009 * 0.02562 * 26 25 24
28 28 H 1.09000 * 109.47491 * 59.99878 * 1 2 3
29 29 H 1.08996 * 109.47054 * 299.99524 * 1 2 3
30 30 H 1.09004 * 109.47059 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47491 * 120.00122 * 2 1 3
32 32 H 1.09008 * 109.46899 * 240.00762 * 2 1 3
33 33 H 0.97004 * 119.99578 * 179.97438 * 8 7 5
34 34 H 1.07998 * 119.66264 * 359.97438 * 17 16 14
35 35 H 1.07995 * 119.18682 * 180.23962 * 18 17 16
36 36 H 1.08997 * 109.47131 * 300.00265 * 21 20 19
37 37 H 1.09002 * 109.46682 * 60.00067 * 21 20 19
38 38 H 1.09000 * 109.47096 * 179.97438 * 21 20 19
39 39 H 1.08000 * 120.17526 * 0.05275 * 23 22 19
40 40 H 1.07997 * 119.52360 * 180.02562 * 24 23 22
41 41 H 1.07998 * 119.55924 * 179.97438 * 25 24 23
42 42 H 1.08007 * 120.18585 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9816 -0.8418
5 6 3.5418 1.4444 -0.1239
6 1 4.1472 1.8889 0.6523
7 6 4.1432 0.8785 -1.2281
8 7 3.4060 0.3376 -2.1734
9 14 6.0048 0.8802 -1.3814
10 1 6.5539 -0.3518 -0.7601
11 1 6.3833 0.9217 -2.8168
12 1 6.5574 2.0721 -0.6892
13 8 1.6559 2.0916 1.2408
14 6 0.4674 2.7282 1.2562
15 8 -0.2285 2.7406 0.2594
16 6 0.0138 3.4079 2.4775
17 6 0.7427 3.3027 3.6586
18 6 0.3200 3.9457 4.8086
19 6 -0.8343 4.7007 4.8326
20 8 -1.2161 5.3105 5.9812
21 6 -0.3764 5.1277 7.1229
22 6 -1.6202 4.8420 3.6691
23 6 -2.7982 5.6055 3.6732
24 6 -3.5318 5.7188 2.5308
25 6 -3.1310 5.0870 1.3566
26 6 -1.9922 4.3382 1.3185
27 6 -1.2148 4.2014 2.4745
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 0.5137 0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8934 -0.5138 0.8899
32 1 1.8933 -0.5138 -0.8901
33 1 3.8291 -0.0602 -2.9504
34 1 1.6491 2.7158 3.6768
35 1 0.9061 3.8508 5.7107
36 1 -0.3138 4.0660 7.3616
37 1 0.6208 5.5105 6.9054
38 1 -0.7953 5.6674 7.9721
39 1 -3.1211 6.1007 4.5770
40 1 -4.4375 6.3070 2.5360
41 1 -3.7299 5.1918 0.4640
42 1 -1.6915 3.8533 0.4014
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000187993414.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:43:50
Heat of formation + Delta-G solvation = -80.838269 kcal
Electronic energy + Delta-G solvation = -25875.269997 eV
Core-core repulsion = 22171.749161 eV
Total energy + Delta-G solvation = -3703.520836 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.135 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.80647 -39.46595 -38.51277 -35.93650 -35.61854 -33.46085 -32.01781 -31.31397
-30.45090 -29.11039 -27.79164 -27.12056 -24.06800 -23.22698 -22.83795 -22.47515
-20.62456 -19.59197 -18.25787 -17.57455 -17.13288 -16.85167 -16.20733 -16.05867
-15.74813 -15.18314 -15.10802 -14.57783 -14.32682 -13.81398 -13.47183 -13.34228
-13.18760 -12.92348 -12.80928 -12.54917 -12.06546 -11.98374 -11.84013 -11.46746
-11.37648 -11.28557 -11.12304 -10.98143 -10.83578 -10.81712 -10.62479 -10.25654
-9.74883 -9.46527 -9.41514 -9.25391 -8.78957 -8.71805 -8.44209 -7.58786
-6.17725 -4.24578 0.33472 1.01314 1.84173 2.77417 2.90629 3.24795
3.30349 3.33810 3.49901 3.67035 4.18839 4.33993 4.58118 4.64167
4.82436 4.87495 4.96676 5.01850 5.11451 5.14264 5.18272 5.28206
5.41277 5.56295 5.59125 5.93572 6.07588 6.16177 6.21547 6.26609
6.33089 6.34159 6.38898 6.48269 6.62320 6.70152 6.90119 6.95941
7.04008 7.11945 7.19479 7.32454 7.63380 7.75685 7.97693 8.17421
8.65514 8.90620 9.40487 10.89047
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.017341 B = 0.003623 C = 0.003214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1614.301781 B = 7727.124112 C = 8710.175908
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.136 4.136
3 C 0.222 3.778
4 H 0.049 0.951
5 C -0.521 4.521
6 H 0.068 0.932
7 C 0.063 3.937
8 N -0.887 5.887
9 Si 0.910 3.090
10 H -0.278 1.278
11 H -0.284 1.284
12 H -0.272 1.272
13 O -0.351 6.351
14 C 0.506 3.494
15 O -0.514 6.514
16 C -0.151 4.151
17 C -0.008 4.008
18 C -0.239 4.239
19 C 0.171 3.829
20 O -0.309 6.309
21 C 0.024 3.976
22 C -0.081 4.081
23 C -0.089 4.089
24 C -0.130 4.130
25 C -0.106 4.106
26 C -0.117 4.117
27 C 0.021 3.979
28 H 0.053 0.947
29 H 0.032 0.968
30 H 0.032 0.968
31 H 0.041 0.959
32 H 0.109 0.891
33 H 0.266 0.734
34 H 0.146 0.854
35 H 0.134 0.866
36 H 0.060 0.940
37 H 0.060 0.940
38 H 0.101 0.899
39 H 0.130 0.870
40 H 0.122 0.878
41 H 0.125 0.875
42 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.268 8.874 15.194 20.373
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.174 4.174
3 C 0.170 3.830
4 H 0.066 0.934
5 C -0.559 4.559
6 H 0.086 0.914
7 C -0.139 4.139
8 N -0.525 5.525
9 Si 0.737 3.263
10 H -0.204 1.204
11 H -0.210 1.210
12 H -0.196 1.196
13 O -0.267 6.267
14 C 0.352 3.648
15 O -0.407 6.407
16 C -0.152 4.152
17 C -0.026 4.026
18 C -0.258 4.258
19 C 0.124 3.876
20 O -0.222 6.222
21 C -0.071 4.071
22 C -0.081 4.081
23 C -0.107 4.107
24 C -0.148 4.148
25 C -0.124 4.124
26 C -0.134 4.134
27 C 0.021 3.979
28 H 0.072 0.928
29 H 0.051 0.949
30 H 0.051 0.949
31 H 0.060 0.940
32 H 0.127 0.873
33 H 0.076 0.924
34 H 0.163 0.837
35 H 0.152 0.848
36 H 0.079 0.921
37 H 0.079 0.921
38 H 0.120 0.880
39 H 0.148 0.852
40 H 0.140 0.860
41 H 0.143 0.857
42 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -10.569 8.875 14.751 20.200
hybrid contribution 1.153 -0.224 -0.011 1.175
sum -9.415 8.651 14.739 19.513
Atomic orbital electron populations
1.21862 0.98322 0.98994 1.00851 1.22022 0.92690 0.99323 1.03316
1.20692 0.94963 0.88742 0.78601 0.93351 1.21041 0.89675 1.38945
1.06250 0.91361 1.24874 0.99172 0.94792 0.95060 1.69892 1.35337
1.37831 1.09452 0.86295 0.83980 0.78644 0.77348 1.20381 1.20981
1.19650 1.86548 1.33498 1.62496 1.44176 1.20545 0.80856 0.76511
0.86904 1.90598 1.55146 1.59210 1.35736 1.20189 0.97228 1.04451
0.93329 1.21307 0.97579 0.93425 0.90278 1.20926 0.98954 1.05414
1.00545 1.19179 0.92326 0.90675 0.85379 1.85942 1.50333 1.68394
1.17500 1.23157 0.95199 1.02424 0.86304 1.17303 0.97077 1.02811
0.90915 1.20855 0.93440 0.97701 0.98744 1.20865 1.00223 1.00694
0.93061 1.21078 0.96759 0.96550 0.98009 1.22066 0.93803 0.97828
0.99688 1.18574 0.92734 0.94048 0.92558 0.92753 0.94851 0.94887
0.94030 0.87341 0.92404 0.83675 0.84830 0.92136 0.92113 0.88028
0.85196 0.86000 0.85733 0.81286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.16 8.56 37.16 0.32 -2.84 16
2 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16
3 C 0.22 5.88 2.25 -27.88 -0.06 5.82 16
4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16
5 C -0.52 -14.49 8.90 -34.44 -0.31 -14.80 16
6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16
7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16
8 N -0.89 -24.93 11.29 55.43 0.63 -24.30 16
9 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16
10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
13 O -0.35 -8.34 9.08 -40.87 -0.37 -8.72 16
14 C 0.51 10.93 6.31 34.26 0.22 11.15 16
15 O -0.51 -11.76 10.74 -19.33 -0.21 -11.97 16
16 C -0.15 -2.71 6.05 -102.80 -0.62 -3.34 16
17 C -0.01 -0.12 9.59 -39.18 -0.38 -0.49 16
18 C -0.24 -3.01 8.95 -39.64 -0.35 -3.37 16
19 C 0.17 2.22 6.70 -38.60 -0.26 1.96 16
20 O -0.31 -3.32 9.67 -18.26 -0.18 -3.50 16
21 C 0.02 0.16 9.79 101.05 0.99 1.15 16
22 C -0.08 -1.17 5.75 -106.76 -0.61 -1.78 16
23 C -0.09 -1.10 9.56 -39.50 -0.38 -1.48 16
24 C -0.13 -1.50 9.95 -39.93 -0.40 -1.90 16
25 C -0.11 -1.38 9.96 -39.89 -0.40 -1.78 16
26 C -0.12 -1.89 9.27 -39.61 -0.37 -2.25 16
27 C 0.02 0.35 5.90 -104.79 -0.62 -0.26 16
28 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16
29 H 0.03 0.72 6.06 -51.93 -0.31 0.40 16
30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.11 2.91 5.95 -51.92 -0.31 2.60 16
33 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16
34 H 0.15 2.14 7.61 -52.49 -0.40 1.74 16
35 H 0.13 1.26 6.14 -52.49 -0.32 0.94 16
36 H 0.06 0.36 7.63 -51.93 -0.40 -0.04 16
37 H 0.06 0.36 7.63 -51.93 -0.40 -0.03 16
38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16
39 H 0.13 1.34 7.60 -52.49 -0.40 0.94 16
40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16
41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16
42 H 0.17 3.06 5.04 -52.48 -0.26 2.80 16
LS Contribution 345.17 15.07 5.20 5.20
Total: -1.00 -30.79 345.17 -8.65 -39.44
By element:
Atomic # 1 Polarization: 9.25 SS G_CDS: -5.24 Total: 4.01 kcal
Atomic # 6 Polarization: -12.63 SS G_CDS: -3.47 Total: -16.10 kcal
Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.30 kcal
Atomic # 8 Polarization: -23.43 SS G_CDS: -0.76 Total: -24.18 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -30.79 -8.65 -39.44 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187993414.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.396 kcal
(2) G-P(sol) polarization free energy of solvation -30.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.838 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds