Wall clock time and date at job start Tue Mar 31 2020 10:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46787 * 2 1 4 4 H 1.09002 * 109.47523 * 305.00071 * 3 2 1 5 5 C 1.50702 * 109.47095 * 185.00307 * 3 2 1 6 6 H 1.08002 * 120.00059 * 240.00705 * 5 3 2 7 7 C 1.37883 * 120.00136 * 60.00003 * 5 3 2 8 8 N 1.31514 * 119.99377 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00268 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47522 * 89.99831 * 9 7 5 11 11 H 1.48501 * 109.47263 * 210.00232 * 9 7 5 12 12 H 1.48502 * 109.47096 * 329.99957 * 9 7 5 13 13 O 1.45197 * 109.47075 * 65.00704 * 3 2 1 14 14 C 1.34837 * 116.99934 * 269.99607 * 13 3 2 15 15 O 1.21578 * 119.99613 * 359.97438 * 14 13 3 16 16 C 1.46944 * 120.00165 * 180.02562 * 14 13 3 17 17 C 1.39194 * 120.57124 * 354.24953 * 16 14 13 18 18 C 1.38371 * 120.67419 * 179.77088 * 17 16 14 19 19 C 1.37951 * 121.62819 * 0.48956 * 18 17 16 20 20 O 1.35523 * 119.78580 * 179.74816 * 19 18 17 21 21 C 1.42899 * 116.99812 * 0.02562 * 20 19 18 22 22 C 1.41116 * 120.42586 * 359.76902 * 19 18 17 23 23 C 1.40381 * 121.29423 * 179.97438 * 22 19 18 24 24 C 1.36235 * 119.65000 * 180.02562 * 23 22 19 25 25 C 1.39228 * 120.95848 * 0.04539 * 24 23 22 26 26 C 1.36349 * 120.87964 * 359.95148 * 25 24 23 27 27 C 1.39980 * 119.63009 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47491 * 59.99878 * 1 2 3 29 29 H 1.08996 * 109.47054 * 299.99524 * 1 2 3 30 30 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47491 * 120.00122 * 2 1 3 32 32 H 1.09008 * 109.46899 * 240.00762 * 2 1 3 33 33 H 0.97004 * 119.99578 * 179.97438 * 8 7 5 34 34 H 1.07998 * 119.66264 * 359.97438 * 17 16 14 35 35 H 1.07995 * 119.18682 * 180.23962 * 18 17 16 36 36 H 1.08997 * 109.47131 * 300.00265 * 21 20 19 37 37 H 1.09002 * 109.46682 * 60.00067 * 21 20 19 38 38 H 1.09000 * 109.47096 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.17526 * 0.05275 * 23 22 19 40 40 H 1.07997 * 119.52360 * 180.02562 * 24 23 22 41 41 H 1.07998 * 119.55924 * 179.97438 * 25 24 23 42 42 H 1.08007 * 120.18585 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4060 0.3376 -2.1734 9 14 6.0048 0.8802 -1.3814 10 1 6.5539 -0.3518 -0.7601 11 1 6.3833 0.9217 -2.8168 12 1 6.5574 2.0721 -0.6892 13 8 1.6559 2.0916 1.2408 14 6 0.4674 2.7282 1.2562 15 8 -0.2285 2.7406 0.2594 16 6 0.0138 3.4079 2.4775 17 6 0.7427 3.3027 3.6586 18 6 0.3200 3.9457 4.8086 19 6 -0.8343 4.7007 4.8326 20 8 -1.2161 5.3105 5.9812 21 6 -0.3764 5.1277 7.1229 22 6 -1.6202 4.8420 3.6691 23 6 -2.7982 5.6055 3.6732 24 6 -3.5318 5.7188 2.5308 25 6 -3.1310 5.0870 1.3566 26 6 -1.9922 4.3382 1.3185 27 6 -1.2148 4.2014 2.4745 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8291 -0.0602 -2.9504 34 1 1.6491 2.7158 3.6768 35 1 0.9061 3.8508 5.7107 36 1 -0.3138 4.0660 7.3616 37 1 0.6208 5.5105 6.9054 38 1 -0.7953 5.6674 7.9721 39 1 -3.1211 6.1007 4.5770 40 1 -4.4375 6.3070 2.5360 41 1 -3.7299 5.1918 0.4640 42 1 -1.6915 3.8533 0.4014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187993414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:49 Heat of formation + Delta-G solvation = -96.796826 kcal Electronic energy + Delta-G solvation = -25875.962012 eV Core-core repulsion = 22171.749161 eV Total energy + Delta-G solvation = -3704.212850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.93709 -40.99439 -39.55486 -37.57704 -36.87751 -35.45392 -33.41361 -33.00284 -31.49990 -30.31491 -29.20581 -28.35485 -25.59143 -24.81328 -23.90172 -23.78965 -22.21275 -21.35916 -19.31948 -18.96992 -18.58759 -18.26843 -17.53295 -17.45642 -16.98419 -16.76231 -16.48508 -15.99048 -15.39911 -15.13768 -14.89678 -14.69596 -14.49095 -14.20774 -14.10017 -13.83507 -13.64991 -13.35831 -13.24253 -13.09635 -12.82028 -12.74757 -12.62389 -12.54102 -12.38731 -12.13127 -11.92309 -11.81552 -11.74370 -11.41297 -10.94268 -10.79407 -10.51194 -10.46733 -9.77920 -8.68763 -8.27096 -6.43926 -0.81440 -0.05042 0.67749 1.41270 1.43531 1.54270 1.56512 1.99456 2.09997 2.16089 2.42720 3.01942 3.03705 3.57743 3.66936 3.86629 3.88768 4.01756 4.09651 4.35366 4.38487 4.39083 4.42812 4.42844 4.46773 4.51706 4.58684 4.75853 4.78333 4.86598 4.94388 5.07757 5.10531 5.11852 5.21576 5.26171 5.32929 5.38979 5.50002 5.58552 5.62612 5.67921 5.93522 6.01047 6.16596 6.21412 6.61222 7.02775 7.27867 8.79872 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.003623 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.301781 B = 7727.124112 C = 8710.175908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.267 1.267 13 O -0.359 6.359 14 C 0.499 3.501 15 O -0.539 6.539 16 C -0.199 4.199 17 C 0.007 3.993 18 C -0.246 4.246 19 C 0.195 3.805 20 O -0.309 6.309 21 C 0.010 3.990 22 C -0.102 4.102 23 C -0.080 4.080 24 C -0.128 4.128 25 C -0.091 4.091 26 C -0.158 4.158 27 C 0.010 3.990 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.270 0.730 34 H 0.144 0.856 35 H 0.170 0.830 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.130 0.870 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.146 0.854 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.901 10.297 18.341 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.191 1.191 13 O -0.276 6.276 14 C 0.348 3.652 15 O -0.433 6.433 16 C -0.201 4.201 17 C -0.012 4.012 18 C -0.264 4.264 19 C 0.147 3.853 20 O -0.220 6.220 21 C -0.084 4.084 22 C -0.103 4.103 23 C -0.098 4.098 24 C -0.146 4.146 25 C -0.109 4.109 26 C -0.176 4.176 27 C 0.010 3.990 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.188 0.812 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.176 0.824 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.220 10.306 17.927 23.526 hybrid contribution 1.195 -0.514 -0.823 1.539 sum -10.025 9.792 17.104 22.112 Atomic orbital electron populations 1.21698 0.96429 1.00459 0.99996 1.21861 0.94321 0.98095 1.02328 1.20379 0.94548 0.89213 0.78513 0.97559 1.21325 0.90416 1.40031 1.06989 0.91653 1.25800 1.04254 0.93844 0.94280 1.70019 1.37429 1.37904 1.09835 0.85207 0.77660 0.79106 0.77587 1.19093 1.20285 1.19106 1.86520 1.35201 1.63254 1.42635 1.21285 0.79729 0.76006 0.88228 1.90591 1.55490 1.60150 1.37060 1.20046 0.99704 1.07693 0.92616 1.21431 0.96808 0.92619 0.90321 1.21152 0.99502 1.05096 1.00675 1.19232 0.91338 0.88976 0.85789 1.85959 1.51161 1.67370 1.17520 1.23580 0.95547 1.03890 0.85345 1.17542 0.98492 1.03512 0.90709 1.21243 0.92147 0.96323 1.00053 1.21262 1.01287 1.00188 0.91828 1.21390 0.95202 0.94529 0.99731 1.21870 0.96157 1.00640 0.98922 1.18659 0.92302 0.94349 0.93726 0.94440 0.94882 0.92039 0.93611 0.89401 0.92028 0.83813 0.81243 0.90989 0.91077 0.85217 0.82405 0.82013 0.83585 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.56 71.98 0.62 -5.34 16 2 C -0.13 -6.68 5.49 30.59 0.17 -6.52 16 3 C 0.23 12.81 2.25 29.85 0.07 12.87 16 4 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 5 C -0.55 -31.94 8.90 25.60 0.23 -31.72 16 6 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 7 C 0.02 1.01 5.29 84.66 0.45 1.45 16 8 N -0.91 -53.10 11.29 21.45 0.24 -52.85 16 9 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 O -0.36 -18.31 9.08 -57.50 -0.52 -18.83 16 14 C 0.50 23.37 6.31 70.10 0.44 23.81 16 15 O -0.54 -27.13 10.74 19.58 0.21 -26.92 16 16 C -0.20 -7.60 6.05 -18.68 -0.11 -7.71 16 17 C 0.01 0.20 9.59 22.53 0.22 0.42 16 18 C -0.25 -5.69 8.95 22.23 0.20 -5.49 16 19 C 0.19 4.55 6.70 22.91 0.15 4.71 16 20 O -0.31 -5.37 9.67 -88.27 -0.85 -6.22 16 21 C 0.01 0.09 9.79 113.37 1.11 1.20 16 22 C -0.10 -2.81 5.75 -21.25 -0.12 -2.94 16 23 C -0.08 -1.72 9.56 22.32 0.21 -1.51 16 24 C -0.13 -2.56 9.95 22.04 0.22 -2.34 16 25 C -0.09 -2.29 9.96 22.07 0.22 -2.07 16 26 C -0.16 -5.41 9.27 22.25 0.21 -5.20 16 27 C 0.01 0.34 5.90 -19.97 -0.12 0.23 16 28 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 29 H 0.03 1.50 6.06 -2.39 -0.01 1.49 16 30 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 4.95 5.95 -2.38 -0.01 4.94 16 33 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 34 H 0.14 4.35 7.61 -2.91 -0.02 4.33 16 35 H 0.17 2.60 6.14 -2.91 -0.02 2.58 16 36 H 0.07 0.53 7.63 -2.39 -0.02 0.51 16 37 H 0.07 0.54 7.63 -2.39 -0.02 0.52 16 38 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.16 2.51 7.60 -2.91 -0.02 2.48 16 40 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.14 5.54 5.04 -2.91 -0.01 5.52 16 Total: -1.00 -72.16 345.17 6.30 -65.85 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.04 Total: 19.63 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 4.15 Total: -26.14 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.24 Total: -52.85 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -1.17 Total: -51.98 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.16 6.30 -65.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187993414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.944 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds