Wall clock time and date at job start Tue Mar 31 2020 10:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46520 * 2 1 4 4 O 1.42897 * 109.46992 * 240.00040 * 2 1 3 5 5 C 1.35811 * 116.99990 * 84.65505 * 4 2 1 6 6 C 1.36667 * 120.22741 * 354.58398 * 5 4 2 7 7 C 1.39193 * 120.91953 * 179.72714 * 6 5 4 8 8 C 1.36174 * 121.05992 * 0.26017 * 7 6 5 9 9 C 1.40521 * 119.77066 * 359.97438 * 8 7 6 10 10 C 1.40547 * 121.26821 * 180.02562 * 9 8 7 11 11 C 1.36111 * 119.64846 * 179.97438 * 10 9 8 12 12 C 1.39360 * 120.97418 * 359.97438 * 11 10 9 13 13 C 1.36130 * 120.97838 * 0.02562 * 12 11 10 14 14 C 1.40408 * 119.66639 * 359.97438 * 13 12 11 15 15 C 1.50690 * 109.47169 * 119.99768 * 2 1 3 16 16 O 1.20831 * 119.99864 * 120.00098 * 15 2 1 17 17 O 1.34231 * 120.00548 * 300.00297 * 15 2 1 18 18 C 1.45195 * 117.00395 * 180.02562 * 17 15 2 19 19 C 1.53002 * 109.47150 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47113 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00119 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99842 * 179.97438 * 20 19 18 23 23 N 1.31508 * 119.99672 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00034 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47281 * 89.99594 * 24 22 20 26 26 H 1.48499 * 109.47204 * 209.99494 * 24 22 20 27 27 H 1.48495 * 109.47520 * 329.99596 * 24 22 20 28 28 H 1.09004 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47250 * 299.99890 * 1 2 3 30 30 H 1.08996 * 109.47522 * 60.00602 * 1 2 3 31 31 H 1.07996 * 119.53807 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.46868 * 180.23663 * 7 6 5 33 33 H 1.08000 * 120.11006 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.18088 * 359.97427 * 10 9 8 35 35 H 1.07996 * 119.50980 * 179.97438 * 11 10 9 36 36 H 1.08005 * 119.50753 * 180.02562 * 12 11 10 37 37 H 1.08009 * 120.16827 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.47554 * 299.99931 * 18 17 15 39 39 H 1.09008 * 109.47145 * 59.99978 * 18 17 15 40 40 H 1.08991 * 109.47301 * 300.00307 * 19 18 17 41 41 H 1.09008 * 109.46792 * 60.00157 * 19 18 17 42 42 H 0.97008 * 120.00107 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1056 0.0604 -2.3051 6 6 1.6552 1.3504 -2.3335 7 6 1.7549 2.1175 -3.4907 8 6 2.2986 1.6045 -4.6289 9 6 2.7689 0.2805 -4.6423 10 6 3.3361 -0.2806 -5.7994 11 6 3.7817 -1.5665 -5.7754 12 6 3.6847 -2.3376 -4.6187 13 6 3.1412 -1.8271 -3.4797 14 6 2.6707 -0.5043 -3.4665 15 6 2.0324 -0.7103 1.2304 16 8 2.7271 -1.6927 1.1195 17 8 1.7081 -0.2518 2.4496 18 6 2.2278 -0.9856 3.5896 19 6 1.7566 -0.3184 4.8834 20 6 2.2955 -1.0805 6.0666 21 1 2.9126 -1.9531 5.9114 22 6 2.0014 -0.6630 7.3474 23 7 2.4721 -1.3277 8.3799 24 14 0.9346 0.8467 7.6159 25 1 -0.4914 0.4387 7.6879 26 1 1.3247 1.5089 8.8865 27 1 1.1224 1.7927 6.4868 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.2203 1.7821 -1.4442 32 1 1.3950 3.1357 -3.4858 33 1 2.3680 2.2133 -5.5183 34 1 3.4180 0.3055 -6.7029 35 1 4.2167 -1.9954 -6.6659 36 1 4.0462 -3.3553 -4.6260 37 1 3.0721 -2.4366 -2.5907 38 1 1.8644 -2.0127 3.5569 39 1 3.3173 -0.9844 3.5565 40 1 2.1203 0.7085 4.9159 41 1 0.6670 -0.3193 4.9167 42 1 2.2649 -1.0342 9.2811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193019656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:15 Heat of formation + Delta-G solvation = -82.852575 kcal Electronic energy + Delta-G solvation = -24745.420863 eV Core-core repulsion = 21041.812681 eV Total energy + Delta-G solvation = -3703.608182 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25151 -40.22339 -38.84200 -36.44700 -36.09980 -33.46617 -32.96758 -31.72798 -30.76484 -30.41361 -29.00069 -25.88714 -24.71535 -23.59987 -23.39671 -22.08785 -20.86501 -20.56836 -18.56343 -18.07657 -17.29101 -17.13069 -16.58402 -16.38182 -16.16072 -15.76001 -15.44727 -14.66038 -14.51606 -14.25398 -13.99352 -13.90775 -13.52724 -13.36432 -13.28698 -12.93461 -12.69061 -12.44751 -12.23524 -12.10615 -11.75979 -11.55725 -11.34648 -11.29152 -11.25787 -11.04819 -10.76352 -10.59170 -10.04995 -9.97120 -9.79155 -9.72924 -9.39913 -8.94841 -8.66611 -7.84828 -6.16813 -4.18550 0.33640 0.69884 1.79643 2.14301 2.30373 2.74152 3.24360 3.31856 3.35017 3.35653 3.84245 4.34495 4.35817 4.40643 4.53782 4.57360 4.60591 4.71501 4.78641 4.91065 4.91776 5.12449 5.16463 5.16850 5.27665 5.35709 5.40975 5.66920 5.76402 5.79225 5.84238 5.86626 5.88956 5.95440 6.12947 6.25282 6.30020 6.36322 6.41261 6.63223 6.68310 7.01958 7.10052 7.14870 7.56981 7.95720 8.35044 8.84637 9.42178 10.95651 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.002402 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.225769 B =11655.852284 C =12378.787330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.112 0.888 4 O -0.284 6.284 5 C 0.154 3.846 6 C -0.229 4.229 7 C -0.071 4.071 8 C -0.150 4.150 9 C -0.018 4.018 10 C -0.121 4.121 11 C -0.102 4.102 12 C -0.133 4.133 13 C -0.078 4.078 14 C -0.070 4.070 15 C 0.461 3.539 16 O -0.490 6.490 17 O -0.355 6.355 18 C 0.083 3.917 19 C -0.008 4.008 20 C -0.529 4.529 21 H 0.076 0.924 22 C 0.072 3.928 23 N -0.895 5.895 24 Si 0.882 3.118 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.263 1.263 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 6.198 -29.533 30.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.035 3.965 3 H 0.129 0.871 4 O -0.197 6.197 5 C 0.108 3.892 6 C -0.248 4.248 7 C -0.089 4.089 8 C -0.168 4.168 9 C -0.018 4.018 10 C -0.139 4.139 11 C -0.120 4.120 12 C -0.151 4.151 13 C -0.096 4.096 14 C -0.070 4.070 15 C 0.301 3.699 16 O -0.377 6.377 17 O -0.272 6.272 18 C 0.011 3.989 19 C -0.046 4.046 20 C -0.567 4.567 21 H 0.094 0.906 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.708 3.292 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.188 1.188 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.242 5.665 -29.255 29.882 hybrid contribution -0.468 0.783 0.467 1.025 sum -2.711 6.448 -28.788 29.626 Atomic orbital electron populations 1.22332 0.91437 1.04793 1.04653 1.21721 0.96357 0.96684 0.81691 0.87059 1.86093 1.80660 1.37335 1.15566 1.18689 0.94390 0.90388 0.85691 1.20952 1.08687 0.94342 1.00778 1.20567 0.96952 0.99431 0.91968 1.20887 1.02375 0.94503 0.99015 1.17892 0.97607 0.93751 0.92526 1.20955 0.99904 0.95874 0.97173 1.20926 0.98546 0.94291 0.98187 1.20869 1.00780 1.00424 0.92999 1.21107 0.95690 0.93920 0.98894 1.17452 1.02823 0.95285 0.91487 1.22741 0.78507 0.83311 0.85339 1.90689 1.34505 1.25112 1.87365 1.86444 1.69688 1.56523 1.14499 1.23494 0.98720 0.95357 0.81330 1.19638 0.97398 0.97336 0.90218 1.20822 1.33300 1.13835 0.88728 0.90605 1.24938 0.95497 0.96824 0.95753 1.69892 1.44910 1.39940 0.98582 0.86745 0.80963 0.83504 0.77950 1.20032 1.21135 1.18769 0.90569 0.88844 0.90382 0.84914 0.85616 0.85471 0.85366 0.85897 0.85745 0.84656 0.91417 0.91442 0.95303 0.95709 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.10 37.16 0.34 -1.40 16 2 C 0.09 1.16 2.75 -27.89 -0.08 1.08 16 3 H 0.11 1.14 6.33 -51.93 -0.33 0.81 16 4 O -0.28 -3.88 8.56 -39.10 -0.33 -4.22 16 5 C 0.15 1.87 6.58 -39.12 -0.26 1.61 16 6 C -0.23 -2.26 8.20 -39.79 -0.33 -2.59 16 7 C -0.07 -0.60 9.94 -39.97 -0.40 -1.00 16 8 C -0.15 -1.29 9.77 -39.46 -0.39 -1.68 16 9 C -0.02 -0.18 5.74 -106.84 -0.61 -0.79 16 10 C -0.12 -1.02 9.77 -39.48 -0.39 -1.41 16 11 C -0.10 -0.83 9.95 -39.93 -0.40 -1.23 16 12 C -0.13 -1.25 9.95 -39.92 -0.40 -1.64 16 13 C -0.08 -0.90 9.56 -39.52 -0.38 -1.28 16 14 C -0.07 -0.84 5.75 -106.73 -0.61 -1.45 16 15 C 0.46 7.73 7.33 36.00 0.26 8.00 16 16 O -0.49 -9.80 16.25 -25.48 -0.41 -10.21 16 17 O -0.35 -6.41 10.12 -39.26 -0.40 -6.81 16 18 C 0.08 1.74 5.40 37.16 0.20 1.94 16 19 C -0.01 -0.20 4.42 -27.88 -0.12 -0.32 16 20 C -0.53 -14.82 9.66 -34.44 -0.33 -15.16 16 21 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 23 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 24 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.08 0.63 6.88 -51.93 -0.36 0.27 16 31 H 0.13 1.08 5.32 -52.49 -0.28 0.80 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.14 1.63 7.62 -52.48 -0.40 1.23 16 38 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 39 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 40 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 41 H 0.02 0.57 7.57 -51.92 -0.39 0.17 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -32.77 356.48 -9.17 -41.94 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.52 Total: -0.81 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.98 Total: -15.36 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.77 Total: -26.28 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -1.15 Total: -21.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.77 -9.17 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193019656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.908 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds