Wall clock time and date at job start Tue Mar 31 2020 11:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 119.99863 * 2 1 4 4 H 1.48501 * 109.47052 * 270.00503 * 3 2 1 5 5 H 1.48498 * 109.47132 * 30.00121 * 3 2 1 6 6 H 1.48497 * 109.47187 * 150.00277 * 3 2 1 7 7 C 1.38945 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00056 * 197.98587 * 7 2 1 9 9 N 1.37098 * 120.00365 * 17.98544 * 7 2 1 10 10 C 1.34772 * 119.99866 * 44.48556 * 9 7 2 11 11 O 1.21292 * 120.00384 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99948 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.47032 * 180.02562 * 12 10 9 14 14 C 1.46040 * 119.41327 * 90.00416 * 13 12 10 15 15 C 1.52695 * 111.05030 * 142.27978 * 14 13 12 16 16 C 1.50551 * 109.92333 * 51.15846 * 15 14 13 17 17 C 1.37762 * 120.94901 * 146.00330 * 16 15 14 18 18 C 1.38436 * 119.93248 * 179.97438 * 17 16 15 19 19 C 1.38387 * 120.44497 * 359.97438 * 18 17 16 20 20 C 1.38093 * 120.17869 * 0.02562 * 19 18 17 21 21 C 1.39232 * 119.56687 * 0.02562 * 20 19 18 22 22 C 1.34819 * 119.41319 * 269.97572 * 13 12 10 23 23 O 1.21564 * 120.44992 * 2.71122 * 22 13 12 24 24 C 1.46504 * 119.99721 * 224.49303 * 9 7 2 25 25 C 1.52993 * 117.50106 * 3.26585 * 24 9 7 26 26 C 1.53001 * 117.49611 * 294.60619 * 24 9 7 27 27 H 0.96997 * 120.00228 * 354.95982 * 1 2 3 28 28 H 1.09000 * 109.47166 * 60.00218 * 12 10 9 29 29 H 1.08997 * 109.47172 * 300.00195 * 12 10 9 30 30 H 1.08996 * 109.16354 * 21.87214 * 14 13 12 31 31 H 1.09005 * 109.11672 * 262.65588 * 14 13 12 32 32 H 1.09005 * 109.38864 * 291.02226 * 15 14 13 33 33 H 1.08998 * 109.32048 * 171.25717 * 15 14 13 34 34 H 1.07999 * 120.04008 * 359.97438 * 17 16 15 35 35 H 1.08002 * 119.78114 * 179.97438 * 18 17 16 36 36 H 1.07991 * 119.91209 * 179.73498 * 19 18 17 37 37 H 1.07997 * 120.21666 * 179.97438 * 20 19 18 38 38 H 1.09001 * 115.54842 * 148.94402 * 24 9 7 39 39 H 1.09002 * 117.50006 * 0.02562 * 25 24 9 40 40 H 1.09000 * 117.49765 * 145.02352 * 25 24 9 41 41 H 1.09000 * 117.49706 * 214.98281 * 26 24 9 42 42 H 1.08995 * 117.50048 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0493 -1.2263 0.2883 9 7 1.3737 -2.3615 -0.3677 10 6 0.5767 -2.3776 -1.4543 11 8 0.4216 -1.3676 -2.1078 12 6 -0.1220 -3.6505 -1.8576 13 7 -0.9214 -3.4086 -3.0611 14 6 -0.3168 -3.6072 -4.3756 15 6 -1.3195 -4.2137 -5.3545 16 6 -2.5938 -3.4120 -5.3461 17 6 -3.3388 -3.2538 -6.4940 18 6 -4.5077 -2.5127 -6.4621 19 6 -4.9355 -1.9281 -5.2830 20 6 -4.1976 -2.0794 -4.1256 21 6 -3.0208 -2.8231 -4.1533 22 6 -2.2023 -3.0072 -2.9356 23 8 -2.6778 -2.7991 -1.8363 24 6 1.5613 -3.5815 0.4214 25 6 2.4161 -3.4804 1.6862 26 6 2.9618 -4.1969 0.4485 27 1 -0.4850 0.8367 0.0738 28 1 -0.7737 -3.9793 -1.0481 29 1 0.6195 -4.4224 -2.0634 30 1 0.5382 -4.2762 -4.2787 31 1 0.0231 -2.6459 -4.7611 32 1 -1.5360 -5.2408 -5.0609 33 1 -0.8936 -4.2061 -6.3578 34 1 -3.0115 -3.7073 -7.4178 35 1 -5.0897 -2.3898 -7.3636 36 1 -5.8464 -1.3482 -5.2689 37 1 -4.5306 -1.6232 -3.2051 38 1 0.7113 -4.2637 0.4416 39 1 2.8387 -2.5060 1.9316 40 1 2.1288 -4.0963 2.5384 41 1 3.0332 -5.2839 0.4870 42 1 3.7435 -3.6943 -0.1210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279276626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:19 Heat of formation + Delta-G solvation = 8.644704 kcal Electronic energy + Delta-G solvation = -26523.649634 eV Core-core repulsion = 22856.301822 eV Total energy + Delta-G solvation = -3667.347812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.49228 -38.66165 -37.77917 -36.18617 -35.61524 -32.92387 -32.35689 -31.15034 -30.81913 -29.07016 -27.51868 -24.70511 -23.95808 -22.95803 -21.68982 -21.50762 -21.13520 -19.59211 -18.39097 -17.37665 -16.71790 -16.22565 -16.00058 -15.70661 -14.92832 -14.79018 -14.58215 -14.20415 -14.15596 -13.67738 -13.54586 -13.39908 -13.24675 -13.02420 -12.63993 -12.40378 -12.31151 -11.72307 -11.70302 -11.41927 -11.11411 -11.05236 -10.94063 -10.87376 -10.81080 -10.41721 -10.13175 -9.94284 -9.71222 -9.42578 -8.91594 -8.84641 -8.71308 -8.46608 -7.70022 -6.95267 -6.00904 -3.79912 0.98373 1.35786 3.11574 3.31018 3.34699 3.41035 3.43865 4.03113 4.14786 4.33136 4.56915 4.69463 4.73822 4.81914 4.92481 5.00907 5.03637 5.25498 5.33879 5.36126 5.39939 5.55952 5.60402 5.64971 5.69329 5.77539 5.81642 5.87712 5.99535 6.05792 6.10418 6.19226 6.22810 6.37088 6.42562 6.46772 6.48352 6.71583 6.82012 6.94034 6.97111 7.67997 7.79459 8.33429 8.63129 9.12930 9.23896 9.72690 10.35528 11.06470 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.004414 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.431937 B = 6341.263705 C = 7246.296087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.352 4.352 8 H 0.076 0.924 9 N -0.427 5.427 10 C 0.471 3.529 11 O -0.523 6.523 12 C 0.100 3.900 13 N -0.586 5.586 14 C 0.119 3.881 15 C -0.098 4.098 16 C -0.053 4.053 17 C -0.128 4.128 18 C -0.101 4.101 19 C -0.134 4.134 20 C -0.057 4.057 21 C -0.119 4.119 22 C 0.563 3.437 23 O -0.520 6.520 24 C 0.073 3.927 25 C -0.172 4.172 26 C -0.208 4.208 27 H 0.263 0.737 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -10.951 -11.029 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.479 4.479 8 H 0.094 0.906 9 N -0.149 5.149 10 C 0.257 3.743 11 O -0.399 6.399 12 C -0.026 4.026 13 N -0.318 5.318 14 C -0.005 4.005 15 C -0.135 4.135 16 C -0.054 4.054 17 C -0.146 4.146 18 C -0.119 4.119 19 C -0.152 4.152 20 C -0.076 4.076 21 C -0.122 4.122 22 C 0.351 3.649 23 O -0.397 6.397 24 C -0.034 4.034 25 C -0.210 4.210 26 C -0.247 4.247 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.532 -10.172 -10.855 15.551 hybrid contribution 0.409 0.873 0.126 0.972 sum -4.124 -9.299 -10.729 14.785 Atomic orbital electron populations 1.69871 1.06369 1.27286 1.42053 1.25270 0.94769 0.99292 0.94433 0.86259 0.79280 0.82544 0.78192 1.20477 1.21345 1.19925 1.18795 0.94267 0.83788 1.51036 0.90586 1.42752 1.44282 1.06896 1.21017 1.20136 0.83073 0.89261 0.81831 1.90524 1.61928 1.34302 1.53177 1.21461 0.95121 0.97988 0.88047 1.47062 1.10933 1.67445 1.06332 1.21290 0.95249 1.01573 0.82343 1.20854 0.92713 0.99129 1.00816 1.20028 0.95948 0.96823 0.92610 1.20866 0.95648 1.00613 0.97504 1.21277 0.96115 0.96539 0.97947 1.21142 1.00441 1.00986 0.92595 1.21230 0.92342 0.95098 0.98914 1.19905 0.96861 1.01819 0.93653 1.18068 0.81572 0.76731 0.88552 1.90803 1.72210 1.49145 1.27495 1.21728 0.92405 0.91725 0.97525 1.23051 1.04429 1.02452 0.91067 1.23328 0.99751 0.98376 1.03247 0.92638 0.88713 0.89345 0.89670 0.91172 0.89646 0.88795 0.85586 0.85849 0.85540 0.84713 0.88130 0.87479 0.89822 0.89827 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -25.72 11.74 55.50 0.65 -25.07 16 2 C 0.07 2.15 4.39 -17.47 -0.08 2.07 16 3 Si 0.91 22.58 29.59 -169.99 -5.03 17.55 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.35 -9.79 7.91 -14.93 -0.12 -9.91 16 8 H 0.08 2.04 7.27 -52.48 -0.38 1.66 16 9 N -0.43 -10.87 2.83 -107.73 -0.31 -11.18 16 10 C 0.47 12.19 7.03 -10.99 -0.08 12.12 16 11 O -0.52 -15.76 14.20 5.55 0.08 -15.68 16 12 C 0.10 2.02 4.48 -5.20 -0.02 2.00 16 13 N -0.59 -11.18 2.29 -176.70 -0.40 -11.58 16 14 C 0.12 1.71 6.44 -4.45 -0.03 1.68 16 15 C -0.10 -1.08 6.04 -28.11 -0.17 -1.25 16 16 C -0.05 -0.72 5.68 -104.32 -0.59 -1.31 16 17 C -0.13 -1.41 9.73 -39.68 -0.39 -1.80 16 18 C -0.10 -1.07 10.04 -39.45 -0.40 -1.47 16 19 C -0.13 -1.63 10.04 -39.58 -0.40 -2.03 16 20 C -0.06 -0.90 9.65 -39.27 -0.38 -1.28 16 21 C -0.12 -2.06 5.78 -105.03 -0.61 -2.66 16 22 C 0.56 11.84 7.48 -12.30 -0.09 11.74 16 23 O -0.52 -13.05 16.22 5.31 0.09 -12.97 16 24 C 0.07 1.46 5.87 -67.93 -0.40 1.06 16 25 C -0.17 -3.15 9.80 -26.70 -0.26 -3.41 16 26 C -0.21 -3.48 10.36 -26.69 -0.28 -3.76 16 27 H 0.26 7.97 8.32 -40.82 -0.34 7.63 16 28 H 0.09 1.97 6.86 -51.93 -0.36 1.61 16 29 H 0.09 1.42 7.75 -51.93 -0.40 1.01 16 30 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.13 2.23 7.85 -52.49 -0.41 1.82 16 38 H 0.10 1.84 6.96 -51.93 -0.36 1.48 16 39 H 0.11 2.18 6.73 -51.93 -0.35 1.83 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -37.91 351.34 -9.51 -47.43 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.60 Total: 4.41 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -4.28 Total: 1.80 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.06 Total: -47.83 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: 0.16 Total: -28.65 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.91 -9.51 -47.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279276626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.070 kcal (2) G-P(sol) polarization free energy of solvation -37.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds