Wall clock time and date at job start Tue Mar 31 2020 11:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 119.99863 * 2 1 4 4 H 1.48501 * 109.47052 * 270.00503 * 3 2 1 5 5 H 1.48498 * 109.47132 * 30.00121 * 3 2 1 6 6 H 1.48497 * 109.47187 * 150.00277 * 3 2 1 7 7 C 1.38945 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00056 * 197.98587 * 7 2 1 9 9 N 1.37098 * 120.00365 * 17.98544 * 7 2 1 10 10 C 1.34772 * 119.99866 * 44.48556 * 9 7 2 11 11 O 1.21292 * 120.00384 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99948 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.47032 * 180.02562 * 12 10 9 14 14 C 1.46040 * 119.41327 * 90.00416 * 13 12 10 15 15 C 1.52695 * 111.05030 * 142.27978 * 14 13 12 16 16 C 1.50551 * 109.92333 * 51.15846 * 15 14 13 17 17 C 1.37762 * 120.94901 * 146.00330 * 16 15 14 18 18 C 1.38436 * 119.93248 * 179.97438 * 17 16 15 19 19 C 1.38387 * 120.44497 * 359.97438 * 18 17 16 20 20 C 1.38093 * 120.17869 * 0.02562 * 19 18 17 21 21 C 1.39232 * 119.56687 * 0.02562 * 20 19 18 22 22 C 1.34819 * 119.41319 * 269.97572 * 13 12 10 23 23 O 1.21564 * 120.44992 * 2.71122 * 22 13 12 24 24 C 1.46504 * 119.99721 * 224.49303 * 9 7 2 25 25 C 1.52993 * 117.50106 * 3.26585 * 24 9 7 26 26 C 1.53001 * 117.49611 * 294.60619 * 24 9 7 27 27 H 0.96997 * 120.00228 * 354.95982 * 1 2 3 28 28 H 1.09000 * 109.47166 * 60.00218 * 12 10 9 29 29 H 1.08997 * 109.47172 * 300.00195 * 12 10 9 30 30 H 1.08996 * 109.16354 * 21.87214 * 14 13 12 31 31 H 1.09005 * 109.11672 * 262.65588 * 14 13 12 32 32 H 1.09005 * 109.38864 * 291.02226 * 15 14 13 33 33 H 1.08998 * 109.32048 * 171.25717 * 15 14 13 34 34 H 1.07999 * 120.04008 * 359.97438 * 17 16 15 35 35 H 1.08002 * 119.78114 * 179.97438 * 18 17 16 36 36 H 1.07991 * 119.91209 * 179.73498 * 19 18 17 37 37 H 1.07997 * 120.21666 * 179.97438 * 20 19 18 38 38 H 1.09001 * 115.54842 * 148.94402 * 24 9 7 39 39 H 1.09002 * 117.50006 * 0.02562 * 25 24 9 40 40 H 1.09000 * 117.49765 * 145.02352 * 25 24 9 41 41 H 1.09000 * 117.49706 * 214.98281 * 26 24 9 42 42 H 1.08995 * 117.50048 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0493 -1.2263 0.2883 9 7 1.3737 -2.3615 -0.3677 10 6 0.5767 -2.3776 -1.4543 11 8 0.4216 -1.3676 -2.1078 12 6 -0.1220 -3.6505 -1.8576 13 7 -0.9214 -3.4086 -3.0611 14 6 -0.3168 -3.6072 -4.3756 15 6 -1.3195 -4.2137 -5.3545 16 6 -2.5938 -3.4120 -5.3461 17 6 -3.3388 -3.2538 -6.4940 18 6 -4.5077 -2.5127 -6.4621 19 6 -4.9355 -1.9281 -5.2830 20 6 -4.1976 -2.0794 -4.1256 21 6 -3.0208 -2.8231 -4.1533 22 6 -2.2023 -3.0072 -2.9356 23 8 -2.6778 -2.7991 -1.8363 24 6 1.5613 -3.5815 0.4214 25 6 2.4161 -3.4804 1.6862 26 6 2.9618 -4.1969 0.4485 27 1 -0.4850 0.8367 0.0738 28 1 -0.7737 -3.9793 -1.0481 29 1 0.6195 -4.4224 -2.0634 30 1 0.5382 -4.2762 -4.2787 31 1 0.0231 -2.6459 -4.7611 32 1 -1.5360 -5.2408 -5.0609 33 1 -0.8936 -4.2061 -6.3578 34 1 -3.0115 -3.7073 -7.4178 35 1 -5.0897 -2.3898 -7.3636 36 1 -5.8464 -1.3482 -5.2689 37 1 -4.5306 -1.6232 -3.2051 38 1 0.7113 -4.2637 0.4416 39 1 2.8387 -2.5060 1.9316 40 1 2.1288 -4.0963 2.5384 41 1 3.0332 -5.2839 0.4870 42 1 3.7435 -3.6943 -0.1210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279276626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:18 Heat of formation + Delta-G solvation = -16.605751 kcal Electronic energy + Delta-G solvation = -26524.744576 eV Core-core repulsion = 22856.301822 eV Total energy + Delta-G solvation = -3668.442753 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80952 -40.32653 -39.18328 -37.83148 -37.11479 -34.81984 -33.76125 -32.84545 -32.17394 -30.21168 -29.13835 -26.63204 -25.05172 -24.26755 -23.12369 -22.81229 -22.57571 -21.35512 -19.74211 -18.64551 -18.53297 -17.85648 -17.62621 -17.04405 -16.54809 -16.24703 -15.92663 -15.73393 -15.56997 -15.33473 -14.94191 -14.79804 -14.60998 -14.51457 -13.98808 -13.78150 -13.47192 -13.34739 -13.09268 -12.93989 -12.82115 -12.74288 -12.50193 -12.22334 -12.13708 -12.08119 -11.93166 -11.66998 -11.23191 -10.95444 -10.79678 -10.36942 -9.97848 -9.75436 -9.43638 -8.96190 -8.19664 -6.01285 -0.11866 0.37852 1.30502 1.38586 1.44669 1.70202 2.02125 2.21554 2.39350 2.87035 3.09681 3.15684 3.34208 3.50523 3.66103 3.77856 4.01585 4.05148 4.12171 4.18164 4.23403 4.28464 4.33318 4.42186 4.42767 4.49665 4.54413 4.64220 4.70701 4.90947 4.92879 4.99989 5.04039 5.12687 5.27490 5.38850 5.42130 5.44901 5.45605 5.48200 5.49641 5.97781 6.16691 6.36041 7.00881 7.09606 7.23252 7.68392 8.35140 8.87185 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.004414 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.431937 B = 6341.263705 C = 7246.296087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.017 3.983 3 Si 0.971 3.029 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.353 4.353 8 H 0.082 0.918 9 N -0.444 5.444 10 C 0.456 3.544 11 O -0.580 6.580 12 C 0.112 3.888 13 N -0.587 5.587 14 C 0.109 3.891 15 C -0.088 4.088 16 C -0.057 4.057 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.161 4.161 22 C 0.547 3.453 23 O -0.586 6.586 24 C 0.036 3.964 25 C -0.174 4.174 26 C -0.167 4.167 27 H 0.253 0.747 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.150 0.850 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -13.757 -14.023 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.189 4.189 3 Si 0.796 3.204 4 H -0.218 1.218 5 H -0.212 1.212 6 H -0.170 1.170 7 C -0.480 4.480 8 H 0.100 0.900 9 N -0.166 5.166 10 C 0.243 3.757 11 O -0.461 6.461 12 C -0.015 4.015 13 N -0.317 5.317 14 C -0.013 4.013 15 C -0.124 4.124 16 C -0.057 4.057 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.153 4.153 20 C -0.107 4.107 21 C -0.164 4.164 22 C 0.338 3.662 23 O -0.468 6.468 24 C -0.069 4.069 25 C -0.212 4.212 26 C -0.206 4.206 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.136 0.864 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.156 0.844 34 H 0.190 0.810 35 H 0.185 0.815 36 H 0.168 0.832 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.098 0.902 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.239 -13.031 -13.848 19.288 hybrid contribution 0.067 1.677 1.018 1.963 sum -3.172 -11.353 -12.830 17.423 Atomic orbital electron populations 1.70046 1.08273 1.27186 1.45305 1.26170 0.95337 1.02967 0.94440 0.85307 0.79138 0.78487 0.77499 1.21794 1.21178 1.17048 1.19116 0.94618 0.85033 1.49250 0.90004 1.43007 1.43918 1.08006 1.21622 1.21126 0.82661 0.90472 0.81395 1.90474 1.63803 1.36726 1.55066 1.21348 0.95419 0.96030 0.88710 1.47318 1.10296 1.66330 1.07757 1.21647 0.97395 1.01407 0.80809 1.20944 0.90587 0.99087 1.01829 1.20383 0.97193 0.96357 0.91816 1.21397 0.94843 0.99436 0.97913 1.21832 0.95948 0.94204 0.98374 1.21428 1.00745 1.01150 0.91932 1.21231 0.93422 0.96530 0.99530 1.19870 0.97612 1.05195 0.93735 1.18924 0.82537 0.75536 0.89205 1.90736 1.73745 1.52182 1.30090 1.22032 0.95208 0.90630 0.99017 1.23115 1.03732 1.02198 0.92140 1.23340 0.96071 1.00591 1.00573 0.93753 0.89977 0.84511 0.86434 0.93773 0.87623 0.84430 0.81022 0.81497 0.83220 0.87894 0.86384 0.90178 0.86701 0.85268 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -58.16 11.74 21.66 0.25 -57.91 16 2 C 0.02 1.01 4.39 84.92 0.37 1.38 16 3 Si 0.97 48.24 29.59 68.60 2.03 50.27 16 4 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.25 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.35 -20.19 7.91 84.04 0.66 -19.52 16 8 H 0.08 4.46 7.27 -2.91 -0.02 4.44 16 9 N -0.44 -23.17 2.83 -613.14 -1.74 -24.91 16 10 C 0.46 24.58 7.03 87.66 0.62 25.19 16 11 O -0.58 -37.11 14.20 -3.07 -0.04 -37.15 16 12 C 0.11 4.59 4.48 85.63 0.38 4.97 16 13 N -0.59 -23.07 2.29 -831.22 -1.90 -24.97 16 14 C 0.11 3.01 6.44 86.36 0.56 3.57 16 15 C -0.09 -1.63 6.04 29.70 0.18 -1.45 16 16 C -0.06 -1.42 5.68 -19.67 -0.11 -1.53 16 17 C -0.12 -2.07 9.73 22.20 0.22 -1.85 16 18 C -0.09 -1.49 10.04 22.35 0.22 -1.26 16 19 C -0.13 -3.18 10.04 22.27 0.22 -2.95 16 20 C -0.09 -3.00 9.65 22.47 0.22 -2.78 16 21 C -0.16 -5.81 5.78 -20.13 -0.12 -5.93 16 22 C 0.55 24.76 7.48 86.79 0.65 25.41 16 23 O -0.59 -32.54 16.22 -3.92 -0.06 -32.60 16 24 C 0.04 1.42 5.87 44.99 0.26 1.69 16 25 C -0.17 -6.09 9.80 30.62 0.30 -5.79 16 26 C -0.17 -5.08 10.36 30.62 0.32 -4.77 16 27 H 0.25 16.53 8.32 -92.71 -0.77 15.76 16 28 H 0.08 3.58 6.86 -2.39 -0.02 3.56 16 29 H 0.14 4.14 7.75 -2.39 -0.02 4.12 16 30 H 0.12 2.41 7.74 -2.39 -0.02 2.39 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.14 1.41 8.08 -2.39 -0.02 1.39 16 34 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.15 2.69 8.06 -2.92 -0.02 2.66 16 37 H 0.10 3.98 7.85 -2.91 -0.02 3.96 16 38 H 0.12 4.20 6.96 -2.39 -0.02 4.19 16 39 H 0.08 3.25 6.73 -2.39 -0.02 3.23 16 40 H 0.11 3.26 8.14 -2.39 -0.02 3.25 16 41 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -94.89 351.34 4.53 -90.36 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 1.03 Total: 22.53 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 4.96 Total: 14.37 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.39 Total: -107.79 kcal Atomic # 8 Polarization: -69.64 SS G_CDS: -0.11 Total: -69.75 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -94.89 4.53 -90.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279276626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.756 kcal (2) G-P(sol) polarization free energy of solvation -94.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds