Wall clock time and date at job start Tue Mar 31 2020 11:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99999 * 2 1 4 4 H 1.48503 * 109.46797 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46839 * 299.99707 * 3 2 1 6 6 H 1.48499 * 109.46903 * 59.99686 * 3 2 1 7 7 C 1.37874 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47121 * 179.97438 * 10 9 7 12 12 N 1.31134 * 126.55043 * 90.24551 * 11 10 9 13 13 C 1.34491 * 105.61485 * 180.12357 * 12 11 10 14 14 C 1.50701 * 126.28899 * 179.90705 * 13 12 11 15 15 C 1.53000 * 109.46783 * 269.71517 * 14 13 12 16 16 C 1.50701 * 109.46783 * 180.02562 * 15 14 13 17 17 C 1.38291 * 120.12043 * 90.00003 * 16 15 14 18 18 C 1.37929 * 120.35446 * 180.12793 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 N 1.29949 * 107.42241 * 359.64425 * 13 12 11 26 26 O 1.21298 * 110.25072 * 0.22485 * 25 13 12 27 27 H 0.97005 * 119.99760 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47484 * 59.99723 * 9 7 2 29 29 H 1.08999 * 109.47086 * 299.99700 * 9 7 2 30 30 H 1.08994 * 109.47368 * 59.99786 * 10 9 7 31 31 H 1.09002 * 109.47041 * 299.99277 * 10 9 7 32 32 H 1.08996 * 109.47362 * 149.71490 * 14 13 12 33 33 H 1.09000 * 109.46729 * 29.71383 * 14 13 12 34 34 H 1.08995 * 109.47483 * 60.00332 * 15 14 13 35 35 H 1.09000 * 109.47378 * 299.99468 * 15 14 13 36 36 H 1.08007 * 119.81963 * 0.15106 * 17 16 15 37 37 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.98439 * 179.61905 * 21 20 19 39 39 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 40 40 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 41 41 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 42 42 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 7 1.1049 -5.6461 -1.0519 13 6 0.4728 -6.7313 -0.5709 14 6 -0.1607 -7.8291 -1.3862 15 6 -1.6246 -7.4798 -1.6616 16 6 -2.2583 -8.5778 -2.4764 17 6 -2.8731 -9.6437 -1.8453 18 6 -3.4523 -10.6527 -2.5862 19 6 -3.4216 -10.6072 -3.9780 20 6 -2.8071 -9.5272 -4.6005 21 6 -2.2274 -8.5229 -3.8584 22 6 -2.9408 -9.7428 -6.0956 23 6 -4.0375 -10.8318 -6.1650 24 8 -3.9166 -11.4872 -4.8911 25 7 0.5135 -6.6623 0.7262 26 8 1.0946 -5.6564 1.0750 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8904 31 1 2.8718 -3.6043 -0.8895 32 1 -0.1088 -8.7677 -0.8344 33 1 0.3721 -7.9333 -2.3313 34 1 -1.6766 -6.5413 -2.2134 35 1 -2.1574 -7.3756 -0.7164 36 1 -2.9002 -9.6861 -0.7664 37 1 -3.9307 -11.4813 -2.0854 38 1 -1.7480 -7.6926 -4.3554 39 1 -2.0052 -10.1043 -6.5223 40 1 -3.2665 -8.8295 -6.5933 41 1 -5.0236 -10.3803 -6.2750 42 1 -3.8399 -11.5275 -6.9806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291067350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:29 Heat of formation + Delta-G solvation = 38.092634 kcal Electronic energy + Delta-G solvation = -24074.186949 eV Core-core repulsion = 20408.116095 eV Total energy + Delta-G solvation = -3666.070853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.11723 -41.35173 -38.30157 -35.94077 -34.80393 -33.45487 -32.96037 -32.28895 -30.31076 -29.57987 -29.02179 -25.85446 -25.12649 -23.66624 -23.07922 -22.20425 -21.88337 -20.98481 -20.22396 -17.68140 -17.66291 -17.06558 -16.89597 -16.46280 -16.37182 -15.62783 -14.59355 -14.51453 -14.37592 -14.34610 -13.84096 -13.56053 -13.49203 -13.23600 -13.16714 -13.01468 -12.53675 -12.44270 -12.11306 -12.02064 -11.63181 -11.57682 -11.32140 -11.17557 -11.02838 -10.92056 -10.88181 -10.68564 -10.56668 -10.14546 -10.01936 -9.33413 -9.18614 -9.13633 -8.47072 -8.28039 -6.11148 -4.15777 1.01535 1.10118 1.61020 2.62625 2.94627 3.26779 3.33137 3.36060 3.39221 3.42353 3.92993 4.08033 4.23397 4.35885 4.41483 4.57443 4.63156 4.71471 4.91167 4.98367 5.09370 5.12064 5.16762 5.25651 5.29623 5.35288 5.40340 5.43501 5.55284 5.74238 5.87923 5.94736 5.99748 6.03859 6.12812 6.15459 6.24025 6.33847 6.41067 6.43468 6.61572 6.91053 7.47696 7.54548 7.84656 8.20017 8.59925 8.89796 9.49316 11.00135 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.002130 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.885325 B =13143.712932 C =14010.620987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.029 4.029 11 C 0.214 3.786 12 N -0.496 5.496 13 C 0.163 3.837 14 C -0.017 4.017 15 C -0.071 4.071 16 C -0.104 4.104 17 C -0.079 4.079 18 C -0.136 4.136 19 C 0.098 3.902 20 C -0.174 4.174 21 C -0.062 4.062 22 C -0.111 4.111 23 C 0.052 3.948 24 O -0.307 6.307 25 N -0.399 5.399 26 O 0.067 5.933 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 -21.232 -9.340 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.068 4.068 11 C -0.005 4.005 12 N -0.230 5.230 13 C -0.110 4.110 14 C -0.056 4.056 15 C -0.110 4.110 16 C -0.104 4.104 17 C -0.097 4.097 18 C -0.155 4.155 19 C 0.053 3.947 20 C -0.174 4.174 21 C -0.080 4.080 22 C -0.148 4.148 23 C -0.023 4.023 24 O -0.222 6.222 25 N -0.110 5.110 26 O 0.011 5.989 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.628 -22.048 -9.233 24.805 hybrid contribution 0.414 1.200 -0.113 1.275 sum -6.214 -20.847 -9.346 23.676 Atomic orbital electron populations 1.69978 1.06157 1.26866 1.49966 1.25018 0.94877 0.99472 0.94933 0.86453 0.80060 0.83352 0.77652 1.19553 1.20940 1.20935 1.21109 0.93210 0.90202 1.51800 0.91963 1.19159 0.93581 0.89843 0.98466 1.20756 0.97972 0.83695 1.04378 1.29629 0.94142 0.96996 0.79718 1.71926 1.16643 1.05266 1.29135 1.25713 0.99653 0.96994 0.88596 1.19846 0.94384 0.92730 0.98602 1.20480 0.93492 0.96875 1.00107 1.19665 1.00727 0.96793 0.93247 1.20826 0.96317 0.92604 0.99976 1.20227 1.04592 1.01101 0.89546 1.19603 0.94792 0.89331 0.90967 1.20736 1.03825 0.97553 0.95323 1.20241 0.97581 0.97389 0.92794 1.21800 1.00024 1.00024 0.92947 1.23824 0.99115 0.94739 0.84670 1.86807 1.81055 1.35230 1.19071 1.74542 1.16397 1.04380 1.15649 1.85266 1.52397 1.24961 1.36252 0.92798 0.95538 0.95793 0.89108 0.88219 0.89321 0.88788 0.89903 0.90366 0.84930 0.85441 0.85383 0.89097 0.88935 0.90552 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -13.91 9.11 -34.44 -0.31 -14.22 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.68 4.95 -27.88 -0.14 0.54 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.21 4.04 7.77 -13.06 -0.10 3.94 16 12 N -0.50 -9.27 11.55 -9.87 -0.11 -9.39 16 13 C 0.16 2.72 7.47 -156.37 -1.17 1.55 16 14 C -0.02 -0.21 5.82 -27.88 -0.16 -0.37 16 15 C -0.07 -0.82 5.33 -27.88 -0.15 -0.97 16 16 C -0.10 -1.09 5.14 -104.56 -0.54 -1.63 16 17 C -0.08 -0.77 9.68 -39.68 -0.38 -1.16 16 18 C -0.14 -1.36 10.06 -39.30 -0.40 -1.76 16 19 C 0.10 1.06 7.04 -38.92 -0.27 0.78 16 20 C -0.17 -1.74 6.27 -104.09 -0.65 -2.39 16 21 C -0.06 -0.64 9.69 -39.75 -0.39 -1.02 16 22 C -0.11 -0.79 7.11 -26.51 -0.19 -0.98 16 23 C 0.05 0.35 8.01 38.06 0.30 0.65 16 24 O -0.31 -3.19 11.10 -20.14 -0.22 -3.41 16 25 N -0.40 -7.14 12.16 30.90 0.38 -6.76 16 26 O 0.07 1.25 11.31 18.13 0.20 1.46 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -31.38 362.79 -9.26 -40.63 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.88 Total: -2.29 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -4.80 Total: -16.22 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 1.00 Total: -41.37 kcal Atomic # 8 Polarization: -1.94 SS G_CDS: -0.02 Total: -1.96 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.38 -9.26 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291067350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.725 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds