Wall clock time and date at job start Tue Mar 31 2020 11:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47364 * 2 1 4 4 C 1.35995 * 116.99938 * 180.02562 * 3 2 1 5 5 C 1.39642 * 119.66947 * 0.29217 * 4 3 2 6 6 C 1.36062 * 121.00232 * 180.28290 * 5 4 3 7 7 C 1.40543 * 119.97741 * 359.70345 * 6 5 4 8 8 C 1.40568 * 121.15037 * 180.02562 * 7 6 5 9 9 C 1.36087 * 119.67907 * 179.97438 * 8 7 6 10 10 C 1.39373 * 120.99221 * 0.02614 * 9 8 7 11 11 C 1.36111 * 120.96452 * 359.92687 * 10 9 8 12 12 C 1.40481 * 119.66614 * 0.09643 * 11 10 9 13 13 C 1.38055 * 119.66281 * 180.02562 * 4 3 2 14 14 O 1.35937 * 120.28984 * 0.02562 * 13 4 3 15 15 C 1.34230 * 117.00187 * 269.72519 * 14 13 4 16 16 O 1.21212 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99763 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.46925 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99822 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00339 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99769 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00300 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46692 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47025 * 120.00050 * 23 21 19 26 26 H 1.48500 * 109.46740 * 240.00408 * 23 21 19 27 27 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47083 * 299.99942 * 1 2 3 29 29 H 1.08997 * 109.47241 * 59.99676 * 1 2 3 30 30 H 1.09002 * 109.47213 * 239.99801 * 2 1 3 31 31 H 1.09005 * 109.47068 * 120.00025 * 2 1 3 32 32 H 1.08005 * 119.49940 * 0.02562 * 5 4 3 33 33 H 1.08006 * 120.01390 * 179.68275 * 6 5 4 34 34 H 1.08007 * 120.15722 * 0.02562 * 8 7 6 35 35 H 1.08002 * 119.50623 * 180.02562 * 9 8 7 36 36 H 1.07999 * 119.51774 * 179.97438 * 10 9 8 37 37 H 1.07995 * 120.16879 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47318 * 299.99486 * 17 15 14 39 39 H 1.09000 * 109.47161 * 60.00117 * 17 15 14 40 40 H 1.09004 * 109.46930 * 299.99901 * 18 17 15 41 41 H 1.09004 * 109.47059 * 59.99503 * 18 17 15 42 42 H 0.97000 * 120.00540 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.1987 0.4130 -0.0073 6 6 5.5514 0.5598 -0.0022 7 6 6.1182 1.8458 0.0036 8 6 7.5123 2.0260 0.0084 9 6 8.0290 3.2850 0.0135 10 6 7.1962 4.4025 0.0146 11 6 5.8419 4.2667 0.0091 12 6 5.2719 2.9827 0.0043 13 6 3.8748 2.8042 0.0000 14 8 3.0459 3.8816 0.0015 15 6 2.6777 4.3690 -1.1937 16 8 3.0829 3.8493 -2.2111 17 6 1.7607 5.5625 -1.2708 18 6 1.4998 5.9113 -2.7375 19 6 0.5834 7.1051 -2.8146 20 1 0.2234 7.5689 -1.9081 21 6 0.2053 7.6058 -4.0423 22 7 0.6441 7.0413 -5.1461 23 14 -0.9301 9.0861 -4.1379 24 1 -1.2785 9.5320 -2.7650 25 1 -0.2451 10.1897 -4.8574 26 1 -2.1689 8.7133 -4.8671 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7714 -0.5789 -0.0124 33 1 6.1894 -0.3117 -0.0023 34 1 8.1701 1.1694 0.0072 35 1 9.1005 3.4202 0.0167 36 1 7.6318 5.3907 0.0191 37 1 5.2087 5.1415 0.0097 38 1 0.8162 5.3273 -0.7801 39 1 2.2275 6.4121 -0.7723 40 1 2.4442 6.1463 -3.2286 41 1 1.0330 5.0615 -3.2355 42 1 0.3779 7.3933 -6.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291799967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:30 Heat of formation + Delta-G solvation = -83.054869 kcal Electronic energy + Delta-G solvation = -25602.338629 eV Core-core repulsion = 21898.721674 eV Total energy + Delta-G solvation = -3703.616955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32566 -39.60818 -39.01920 -36.56527 -35.58081 -33.56235 -32.31270 -31.69813 -31.08400 -29.93523 -28.59215 -26.10989 -24.30696 -23.61360 -22.85531 -22.31917 -21.28525 -19.85387 -18.56108 -17.92790 -17.41922 -17.01420 -16.30280 -16.19850 -15.62371 -15.42653 -15.33179 -14.52814 -14.44749 -14.00847 -13.91214 -13.74711 -13.14206 -13.04400 -12.89188 -12.81328 -12.53627 -12.45371 -12.24892 -11.56062 -11.45169 -11.38945 -11.21966 -11.04510 -10.96688 -10.65707 -10.61837 -10.52115 -10.04404 -10.01131 -9.77917 -9.49354 -9.15243 -8.51978 -8.36807 -7.63469 -6.00173 -4.05070 0.35149 0.92113 1.86257 2.75465 2.80019 3.04369 3.31802 3.34657 3.39712 3.43763 4.04522 4.44787 4.47179 4.64316 4.72063 4.76453 4.82153 4.88818 4.99806 5.03098 5.10331 5.19706 5.30079 5.35303 5.43081 5.66426 5.70755 5.74183 5.79457 5.93633 5.98311 6.04426 6.06875 6.13446 6.23440 6.40418 6.45525 6.51417 6.75778 6.84767 6.96992 7.30856 7.68424 7.74733 7.99423 8.29582 8.48697 9.02188 9.58946 11.10881 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.003772 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.544545 B = 7421.650042 C = 9178.806859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.302 6.302 4 C 0.129 3.871 5 C -0.180 4.180 6 C -0.067 4.067 7 C -0.074 4.074 8 C -0.097 4.097 9 C -0.125 4.125 10 C -0.105 4.105 11 C -0.103 4.103 12 C -0.018 4.018 13 C 0.059 3.941 14 O -0.288 6.288 15 C 0.450 3.550 16 O -0.489 6.489 17 C -0.099 4.099 18 C 0.034 3.966 19 C -0.527 4.527 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.513 -15.285 14.129 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.216 6.216 4 C 0.082 3.918 5 C -0.199 4.199 6 C -0.085 4.085 7 C -0.074 4.074 8 C -0.115 4.115 9 C -0.143 4.143 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.019 4.019 13 C 0.016 3.984 14 O -0.204 6.204 15 C 0.295 3.705 16 O -0.373 6.373 17 C -0.136 4.136 18 C -0.004 4.004 19 C -0.565 4.565 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.723 3.277 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.459 -15.307 13.598 22.991 hybrid contribution -0.513 0.436 -0.281 0.729 sum 9.946 -14.871 13.317 22.302 Atomic orbital electron populations 1.21777 0.92417 1.02752 1.04087 1.22848 0.96349 0.81864 1.01164 1.86213 1.18054 1.29325 1.87975 1.19071 0.83165 0.92856 0.96667 1.20873 0.94244 0.97709 1.07065 1.20869 0.94362 0.96287 0.96990 1.17876 0.93586 0.92271 1.03685 1.20934 0.93138 0.97732 0.99719 1.20831 0.99923 0.92537 1.00980 1.20877 0.93319 0.99112 0.99029 1.20935 0.95593 0.96062 0.99466 1.17867 0.90733 0.94195 0.99077 1.17610 0.87913 0.83964 1.08908 1.84750 1.59043 1.41670 1.34940 1.25428 0.79542 0.85145 0.80396 1.90751 1.52355 1.58653 1.35519 1.21784 0.96349 0.90667 1.04824 1.19033 0.97839 0.97022 0.86466 1.21184 1.29245 1.13548 0.92559 0.92199 1.25016 0.96336 0.97210 0.95726 1.70007 1.44522 1.40733 0.97506 0.86491 0.80526 0.82557 0.78160 1.19609 1.20966 1.20967 0.90377 0.91347 0.91081 0.91957 0.92030 0.84644 0.84735 0.85416 0.85866 0.85606 0.85294 0.88698 0.88820 0.95562 0.95558 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.15 0.38 -1.08 16 2 C 0.05 0.57 5.45 37.15 0.20 0.77 16 3 O -0.30 -4.80 9.89 -35.03 -0.35 -5.14 16 4 C 0.13 2.06 6.68 -39.12 -0.26 1.80 16 5 C -0.18 -2.21 8.94 -39.84 -0.36 -2.57 16 6 C -0.07 -0.76 9.74 -39.49 -0.38 -1.14 16 7 C -0.07 -0.99 5.74 -106.82 -0.61 -1.60 16 8 C -0.10 -1.05 9.76 -39.48 -0.39 -1.44 16 9 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16 10 C -0.11 -1.29 9.95 -39.92 -0.40 -1.68 16 11 C -0.10 -1.55 9.56 -39.50 -0.38 -1.92 16 12 C -0.02 -0.29 5.75 -106.73 -0.61 -0.91 16 13 C 0.06 1.06 4.93 -38.66 -0.19 0.87 16 14 O -0.29 -5.55 9.01 -29.07 -0.26 -5.82 16 15 C 0.45 9.71 7.91 36.01 0.28 10.00 16 16 O -0.49 -12.11 15.75 -19.06 -0.30 -12.41 16 17 C -0.10 -2.12 5.75 -27.88 -0.16 -2.28 16 18 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16 19 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 23 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.61 7.62 -51.93 -0.40 0.22 16 31 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 32 H 0.14 1.22 6.22 -52.48 -0.33 0.89 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.97 7.61 -52.49 -0.40 1.57 16 38 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 39 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 40 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -35.21 362.32 -9.24 -44.45 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.71 Total: -0.83 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.80 Total: -15.74 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.91 Total: -23.37 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.21 -9.24 -44.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291799967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.602 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds