Wall clock time and date at job start Tue Mar 31 2020 11:00:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 O 1.42902 * 109.47364 * 2 1
4 4 C 1.35995 * 116.99938 * 180.02562 * 3 2 1
5 5 C 1.39642 * 119.66947 * 0.29217 * 4 3 2
6 6 C 1.36062 * 121.00232 * 180.28290 * 5 4 3
7 7 C 1.40543 * 119.97741 * 359.70345 * 6 5 4
8 8 C 1.40568 * 121.15037 * 180.02562 * 7 6 5
9 9 C 1.36087 * 119.67907 * 179.97438 * 8 7 6
10 10 C 1.39373 * 120.99221 * 0.02614 * 9 8 7
11 11 C 1.36111 * 120.96452 * 359.92687 * 10 9 8
12 12 C 1.40481 * 119.66614 * 0.09643 * 11 10 9
13 13 C 1.38055 * 119.66281 * 180.02562 * 4 3 2
14 14 O 1.35937 * 120.28984 * 0.02562 * 13 4 3
15 15 C 1.34230 * 117.00187 * 269.72519 * 14 13 4
16 16 O 1.21212 * 120.00018 * 0.02562 * 15 14 13
17 17 C 1.50706 * 119.99763 * 180.02562 * 15 14 13
18 18 C 1.53002 * 109.46925 * 180.02562 * 17 15 14
19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 15
20 20 H 1.07999 * 119.99822 * 0.02562 * 19 18 17
21 21 C 1.37876 * 120.00339 * 179.97438 * 19 18 17
22 22 N 1.31514 * 119.99769 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 120.00300 * 180.02562 * 21 19 18
24 24 H 1.48498 * 109.46692 * 0.02562 * 23 21 19
25 25 H 1.48497 * 109.47025 * 120.00050 * 23 21 19
26 26 H 1.48500 * 109.46740 * 240.00408 * 23 21 19
27 27 H 1.08994 * 109.47308 * 180.02562 * 1 2 3
28 28 H 1.09011 * 109.47083 * 299.99942 * 1 2 3
29 29 H 1.08997 * 109.47241 * 59.99676 * 1 2 3
30 30 H 1.09002 * 109.47213 * 239.99801 * 2 1 3
31 31 H 1.09005 * 109.47068 * 120.00025 * 2 1 3
32 32 H 1.08005 * 119.49940 * 0.02562 * 5 4 3
33 33 H 1.08006 * 120.01390 * 179.68275 * 6 5 4
34 34 H 1.08007 * 120.15722 * 0.02562 * 8 7 6
35 35 H 1.08002 * 119.50623 * 180.02562 * 9 8 7
36 36 H 1.07999 * 119.51774 * 179.97438 * 10 9 8
37 37 H 1.07995 * 120.16879 * 180.02562 * 11 10 9
38 38 H 1.09000 * 109.47318 * 299.99486 * 17 15 14
39 39 H 1.09000 * 109.47161 * 60.00117 * 17 15 14
40 40 H 1.09004 * 109.46930 * 299.99901 * 18 17 15
41 41 H 1.09004 * 109.47059 * 59.99503 * 18 17 15
42 42 H 0.97000 * 120.00540 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3546 1.5254 -0.0005
5 6 4.1987 0.4130 -0.0073
6 6 5.5514 0.5598 -0.0022
7 6 6.1182 1.8458 0.0036
8 6 7.5123 2.0260 0.0084
9 6 8.0290 3.2850 0.0135
10 6 7.1962 4.4025 0.0146
11 6 5.8419 4.2667 0.0091
12 6 5.2719 2.9827 0.0043
13 6 3.8748 2.8042 0.0000
14 8 3.0459 3.8816 0.0015
15 6 2.6777 4.3690 -1.1937
16 8 3.0829 3.8493 -2.2111
17 6 1.7607 5.5625 -1.2708
18 6 1.4998 5.9113 -2.7375
19 6 0.5834 7.1051 -2.8146
20 1 0.2234 7.5689 -1.9081
21 6 0.2053 7.6058 -4.0423
22 7 0.6441 7.0413 -5.1461
23 14 -0.9301 9.0861 -4.1379
24 1 -1.2785 9.5320 -2.7650
25 1 -0.2451 10.1897 -4.8574
26 1 -2.1689 8.7133 -4.8671
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8901
29 1 -0.3633 0.5139 -0.8899
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5139 0.8900
32 1 3.7714 -0.5789 -0.0124
33 1 6.1894 -0.3117 -0.0023
34 1 8.1701 1.1694 0.0072
35 1 9.1005 3.4202 0.0167
36 1 7.6318 5.3907 0.0191
37 1 5.2087 5.1415 0.0097
38 1 0.8162 5.3273 -0.7801
39 1 2.2275 6.4121 -0.7723
40 1 2.4442 6.1463 -3.2286
41 1 1.0330 5.0615 -3.2355
42 1 0.3779 7.3933 -6.0099
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000291799967.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:30
Heat of formation + Delta-G solvation = -83.054869 kcal
Electronic energy + Delta-G solvation = -25602.338629 eV
Core-core repulsion = 21898.721674 eV
Total energy + Delta-G solvation = -3703.616955 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.135 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.32566 -39.60818 -39.01920 -36.56527 -35.58081 -33.56235 -32.31270 -31.69813
-31.08400 -29.93523 -28.59215 -26.10989 -24.30696 -23.61360 -22.85531 -22.31917
-21.28525 -19.85387 -18.56108 -17.92790 -17.41922 -17.01420 -16.30280 -16.19850
-15.62371 -15.42653 -15.33179 -14.52814 -14.44749 -14.00847 -13.91214 -13.74711
-13.14206 -13.04400 -12.89188 -12.81328 -12.53627 -12.45371 -12.24892 -11.56062
-11.45169 -11.38945 -11.21966 -11.04510 -10.96688 -10.65707 -10.61837 -10.52115
-10.04404 -10.01131 -9.77917 -9.49354 -9.15243 -8.51978 -8.36807 -7.63469
-6.00173 -4.05070 0.35149 0.92113 1.86257 2.75465 2.80019 3.04369
3.31802 3.34657 3.39712 3.43763 4.04522 4.44787 4.47179 4.64316
4.72063 4.76453 4.82153 4.88818 4.99806 5.03098 5.10331 5.19706
5.30079 5.35303 5.43081 5.66426 5.70755 5.74183 5.79457 5.93633
5.98311 6.04426 6.06875 6.13446 6.23440 6.40418 6.45525 6.51417
6.75778 6.84767 6.96992 7.30856 7.68424 7.74733 7.99423 8.29582
8.48697 9.02188 9.58946 11.10881
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.012450 B = 0.003772 C = 0.003050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2248.544545 B = 7421.650042 C = 9178.806859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.053 3.947
3 O -0.302 6.302
4 C 0.129 3.871
5 C -0.180 4.180
6 C -0.067 4.067
7 C -0.074 4.074
8 C -0.097 4.097
9 C -0.125 4.125
10 C -0.105 4.105
11 C -0.103 4.103
12 C -0.018 4.018
13 C 0.059 3.941
14 O -0.288 6.288
15 C 0.450 3.550
16 O -0.489 6.489
17 C -0.099 4.099
18 C 0.034 3.966
19 C -0.527 4.527
20 H 0.060 0.940
21 C 0.059 3.941
22 N -0.889 5.889
23 Si 0.895 3.105
24 H -0.272 1.272
25 H -0.284 1.284
26 H -0.284 1.284
27 H 0.077 0.923
28 H 0.067 0.933
29 H 0.070 0.930
30 H 0.062 0.938
31 H 0.061 0.939
32 H 0.136 0.864
33 H 0.135 0.865
34 H 0.128 0.872
35 H 0.123 0.877
36 H 0.126 0.874
37 H 0.129 0.871
38 H 0.095 0.905
39 H 0.094 0.906
40 H 0.026 0.974
41 H 0.026 0.974
42 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.513 -15.285 14.129 23.319
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.022 4.022
3 O -0.216 6.216
4 C 0.082 3.918
5 C -0.199 4.199
6 C -0.085 4.085
7 C -0.074 4.074
8 C -0.115 4.115
9 C -0.143 4.143
10 C -0.123 4.123
11 C -0.121 4.121
12 C -0.019 4.019
13 C 0.016 3.984
14 O -0.204 6.204
15 C 0.295 3.705
16 O -0.373 6.373
17 C -0.136 4.136
18 C -0.004 4.004
19 C -0.565 4.565
20 H 0.078 0.922
21 C -0.143 4.143
22 N -0.528 5.528
23 Si 0.723 3.277
24 H -0.196 1.196
25 H -0.210 1.210
26 H -0.210 1.210
27 H 0.096 0.904
28 H 0.087 0.913
29 H 0.089 0.911
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.154 0.846
33 H 0.153 0.847
34 H 0.146 0.854
35 H 0.141 0.859
36 H 0.144 0.856
37 H 0.147 0.853
38 H 0.113 0.887
39 H 0.112 0.888
40 H 0.044 0.956
41 H 0.044 0.956
42 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 10.459 -15.307 13.598 22.991
hybrid contribution -0.513 0.436 -0.281 0.729
sum 9.946 -14.871 13.317 22.302
Atomic orbital electron populations
1.21777 0.92417 1.02752 1.04087 1.22848 0.96349 0.81864 1.01164
1.86213 1.18054 1.29325 1.87975 1.19071 0.83165 0.92856 0.96667
1.20873 0.94244 0.97709 1.07065 1.20869 0.94362 0.96287 0.96990
1.17876 0.93586 0.92271 1.03685 1.20934 0.93138 0.97732 0.99719
1.20831 0.99923 0.92537 1.00980 1.20877 0.93319 0.99112 0.99029
1.20935 0.95593 0.96062 0.99466 1.17867 0.90733 0.94195 0.99077
1.17610 0.87913 0.83964 1.08908 1.84750 1.59043 1.41670 1.34940
1.25428 0.79542 0.85145 0.80396 1.90751 1.52355 1.58653 1.35519
1.21784 0.96349 0.90667 1.04824 1.19033 0.97839 0.97022 0.86466
1.21184 1.29245 1.13548 0.92559 0.92199 1.25016 0.96336 0.97210
0.95726 1.70007 1.44522 1.40733 0.97506 0.86491 0.80526 0.82557
0.78160 1.19609 1.20966 1.20967 0.90377 0.91347 0.91081 0.91957
0.92030 0.84644 0.84735 0.85416 0.85866 0.85606 0.85294 0.88698
0.88820 0.95562 0.95558 0.92915
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 10.28 37.15 0.38 -1.08 16
2 C 0.05 0.57 5.45 37.15 0.20 0.77 16
3 O -0.30 -4.80 9.89 -35.03 -0.35 -5.14 16
4 C 0.13 2.06 6.68 -39.12 -0.26 1.80 16
5 C -0.18 -2.21 8.94 -39.84 -0.36 -2.57 16
6 C -0.07 -0.76 9.74 -39.49 -0.38 -1.14 16
7 C -0.07 -0.99 5.74 -106.82 -0.61 -1.60 16
8 C -0.10 -1.05 9.76 -39.48 -0.39 -1.44 16
9 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16
10 C -0.11 -1.29 9.95 -39.92 -0.40 -1.68 16
11 C -0.10 -1.55 9.56 -39.50 -0.38 -1.92 16
12 C -0.02 -0.29 5.75 -106.73 -0.61 -0.91 16
13 C 0.06 1.06 4.93 -38.66 -0.19 0.87 16
14 O -0.29 -5.55 9.01 -29.07 -0.26 -5.82 16
15 C 0.45 9.71 7.91 36.01 0.28 10.00 16
16 O -0.49 -12.11 15.75 -19.06 -0.30 -12.41 16
17 C -0.10 -2.12 5.75 -27.88 -0.16 -2.28 16
18 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16
19 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16
20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16
21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
22 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16
23 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16
24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16
26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
28 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16
29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
30 H 0.06 0.61 7.62 -51.93 -0.40 0.22 16
31 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16
32 H 0.14 1.22 6.22 -52.48 -0.33 0.89 16
33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16
34 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16
35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16
36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16
37 H 0.13 1.97 7.61 -52.49 -0.40 1.57 16
38 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16
39 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16
40 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16
41 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16
42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
LS Contribution 362.32 15.07 5.46 5.46
Total: -1.00 -35.21 362.32 -9.24 -44.45
By element:
Atomic # 1 Polarization: 4.87 SS G_CDS: -5.71 Total: -0.83 kcal
Atomic # 6 Polarization: -11.94 SS G_CDS: -3.80 Total: -15.74 kcal
Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.54 kcal
Atomic # 8 Polarization: -22.46 SS G_CDS: -0.91 Total: -23.37 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -35.21 -9.24 -44.45 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291799967.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.602 kcal
(2) G-P(sol) polarization free energy of solvation -35.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.816 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds