Wall clock time and date at job start Tue Mar 31 2020 11:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47364 * 2 1 4 4 C 1.35995 * 116.99938 * 180.02562 * 3 2 1 5 5 C 1.39642 * 119.66947 * 0.29217 * 4 3 2 6 6 C 1.36062 * 121.00232 * 180.28290 * 5 4 3 7 7 C 1.40543 * 119.97741 * 359.70345 * 6 5 4 8 8 C 1.40568 * 121.15037 * 180.02562 * 7 6 5 9 9 C 1.36087 * 119.67907 * 179.97438 * 8 7 6 10 10 C 1.39373 * 120.99221 * 0.02614 * 9 8 7 11 11 C 1.36111 * 120.96452 * 359.92687 * 10 9 8 12 12 C 1.40481 * 119.66614 * 0.09643 * 11 10 9 13 13 C 1.38055 * 119.66281 * 180.02562 * 4 3 2 14 14 O 1.35937 * 120.28984 * 0.02562 * 13 4 3 15 15 C 1.34230 * 117.00187 * 269.72519 * 14 13 4 16 16 O 1.21212 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99763 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.46925 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99822 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00339 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99769 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00300 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46692 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47025 * 120.00050 * 23 21 19 26 26 H 1.48500 * 109.46740 * 240.00408 * 23 21 19 27 27 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47083 * 299.99942 * 1 2 3 29 29 H 1.08997 * 109.47241 * 59.99676 * 1 2 3 30 30 H 1.09002 * 109.47213 * 239.99801 * 2 1 3 31 31 H 1.09005 * 109.47068 * 120.00025 * 2 1 3 32 32 H 1.08005 * 119.49940 * 0.02562 * 5 4 3 33 33 H 1.08006 * 120.01390 * 179.68275 * 6 5 4 34 34 H 1.08007 * 120.15722 * 0.02562 * 8 7 6 35 35 H 1.08002 * 119.50623 * 180.02562 * 9 8 7 36 36 H 1.07999 * 119.51774 * 179.97438 * 10 9 8 37 37 H 1.07995 * 120.16879 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47318 * 299.99486 * 17 15 14 39 39 H 1.09000 * 109.47161 * 60.00117 * 17 15 14 40 40 H 1.09004 * 109.46930 * 299.99901 * 18 17 15 41 41 H 1.09004 * 109.47059 * 59.99503 * 18 17 15 42 42 H 0.97000 * 120.00540 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.1987 0.4130 -0.0073 6 6 5.5514 0.5598 -0.0022 7 6 6.1182 1.8458 0.0036 8 6 7.5123 2.0260 0.0084 9 6 8.0290 3.2850 0.0135 10 6 7.1962 4.4025 0.0146 11 6 5.8419 4.2667 0.0091 12 6 5.2719 2.9827 0.0043 13 6 3.8748 2.8042 0.0000 14 8 3.0459 3.8816 0.0015 15 6 2.6777 4.3690 -1.1937 16 8 3.0829 3.8493 -2.2111 17 6 1.7607 5.5625 -1.2708 18 6 1.4998 5.9113 -2.7375 19 6 0.5834 7.1051 -2.8146 20 1 0.2234 7.5689 -1.9081 21 6 0.2053 7.6058 -4.0423 22 7 0.6441 7.0413 -5.1461 23 14 -0.9301 9.0861 -4.1379 24 1 -1.2785 9.5320 -2.7650 25 1 -0.2451 10.1897 -4.8574 26 1 -2.1689 8.7133 -4.8671 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7714 -0.5789 -0.0124 33 1 6.1894 -0.3117 -0.0023 34 1 8.1701 1.1694 0.0072 35 1 9.1005 3.4202 0.0167 36 1 7.6318 5.3907 0.0191 37 1 5.2087 5.1415 0.0097 38 1 0.8162 5.3273 -0.7801 39 1 2.2275 6.4121 -0.7723 40 1 2.4442 6.1463 -3.2286 41 1 1.0330 5.0615 -3.2355 42 1 0.3779 7.3933 -6.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291799967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:29 Heat of formation + Delta-G solvation = -102.581229 kcal Electronic energy + Delta-G solvation = -25603.185355 eV Core-core repulsion = 21898.721674 eV Total energy + Delta-G solvation = -3704.463681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58973 -40.94671 -40.02888 -38.14449 -36.56315 -35.69589 -33.48703 -32.99686 -32.55737 -30.90493 -29.69140 -28.08673 -25.33697 -24.95396 -24.14143 -23.26003 -22.75791 -21.45195 -19.55707 -19.37881 -18.76961 -18.57413 -17.78140 -17.32715 -16.99953 -16.81620 -16.52102 -16.41258 -15.51702 -15.18061 -15.07326 -14.84688 -14.46609 -14.33663 -14.26820 -14.03082 -13.83175 -13.54077 -13.35889 -13.29864 -12.89518 -12.66038 -12.51786 -12.38382 -12.25648 -12.09047 -12.03371 -11.81395 -11.76313 -11.59570 -11.54283 -11.32674 -10.71354 -10.61900 -9.48774 -8.71161 -8.22511 -6.37332 -0.65783 -0.06881 0.81598 1.10075 1.41635 1.43201 1.56871 1.68062 2.01683 2.13976 2.41875 3.03197 3.10953 3.56223 3.60599 3.80183 3.81958 3.98732 4.02030 4.11244 4.13120 4.21204 4.28383 4.33795 4.34374 4.36987 4.53712 4.71115 4.82068 4.84630 4.86635 4.88167 5.03290 5.06188 5.10648 5.19494 5.36178 5.42675 5.47301 5.48374 5.51882 5.64352 5.75975 5.95720 6.08644 6.24360 6.77986 6.86741 7.33116 8.90572 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.003772 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.544545 B = 7421.650042 C = 9178.806859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 O -0.336 6.336 4 C 0.126 3.874 5 C -0.194 4.194 6 C -0.041 4.041 7 C -0.098 4.098 8 C -0.083 4.083 9 C -0.131 4.131 10 C -0.095 4.095 11 C -0.149 4.149 12 C -0.038 4.038 13 C -0.009 4.009 14 O -0.281 6.281 15 C 0.456 3.544 16 O -0.532 6.532 17 C -0.090 4.090 18 C 0.044 3.956 19 C -0.545 4.545 20 H 0.078 0.922 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.977 3.023 24 H -0.253 1.253 25 H -0.278 1.278 26 H -0.279 1.279 27 H 0.111 0.889 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.186 0.814 34 H 0.173 0.827 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.118 0.882 40 H -0.011 1.011 41 H -0.013 1.013 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.008 -16.873 15.767 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 O -0.250 6.250 4 C 0.080 3.920 5 C -0.212 4.212 6 C -0.059 4.059 7 C -0.098 4.098 8 C -0.100 4.100 9 C -0.149 4.149 10 C -0.113 4.113 11 C -0.168 4.168 12 C -0.039 4.039 13 C -0.051 4.051 14 O -0.196 6.196 15 C 0.303 3.697 16 O -0.420 6.420 17 C -0.127 4.127 18 C 0.006 3.994 19 C -0.582 4.582 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.800 3.200 24 H -0.177 1.177 25 H -0.204 1.204 26 H -0.204 1.204 27 H 0.130 0.870 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.189 0.811 33 H 0.203 0.797 34 H 0.190 0.810 35 H 0.179 0.821 36 H 0.163 0.837 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.008 0.992 41 H 0.006 0.994 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.949 -16.901 15.287 25.732 hybrid contribution -0.840 0.775 -0.748 1.366 sum 11.109 -16.127 14.539 24.390 Atomic orbital electron populations 1.21834 0.91858 1.04486 1.02714 1.23228 0.96883 0.80103 1.03001 1.86176 1.18480 1.32516 1.87820 1.19462 0.83789 0.93369 0.95418 1.21256 0.94537 0.97935 1.07473 1.21480 0.94506 0.96964 0.92911 1.18337 0.94794 0.92312 1.04395 1.21463 0.92271 0.99376 0.96937 1.21279 1.01580 0.91868 1.00180 1.21246 0.92313 1.01136 0.96577 1.20949 0.96953 0.95484 1.03372 1.18155 0.90513 0.95689 0.99508 1.18136 0.88794 0.84072 1.14082 1.84701 1.59308 1.42686 1.32927 1.25293 0.78863 0.84743 0.80827 1.90705 1.54123 1.60043 1.37149 1.21553 0.97809 0.91976 1.01393 1.18767 0.95575 0.95606 0.89425 1.21635 1.29296 1.13797 0.93515 0.90391 1.26121 0.98067 1.00737 0.95143 1.70176 1.46197 1.42823 0.98360 0.85223 0.77820 0.77903 0.79012 1.17673 1.20393 1.20432 0.87026 0.91720 0.93428 0.90957 0.89094 0.81116 0.79714 0.81000 0.82096 0.83675 0.87535 0.86756 0.86391 0.99229 0.99448 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.28 71.98 0.74 -2.10 16 2 C 0.04 0.86 5.45 71.98 0.39 1.26 16 3 O -0.34 -11.02 9.89 -78.86 -0.78 -11.80 16 4 C 0.13 4.13 6.68 22.57 0.15 4.28 16 5 C -0.19 -4.37 8.94 22.10 0.20 -4.18 16 6 C -0.04 -0.79 9.74 22.33 0.22 -0.57 16 7 C -0.10 -2.45 5.74 -21.29 -0.12 -2.57 16 8 C -0.08 -1.48 9.76 22.34 0.22 -1.26 16 9 C -0.13 -2.39 9.95 22.04 0.22 -2.17 16 10 C -0.09 -2.27 9.95 22.05 0.22 -2.05 16 11 C -0.15 -4.80 9.56 22.32 0.21 -4.59 16 12 C -0.04 -1.28 5.75 -21.23 -0.12 -1.41 16 13 C -0.01 -0.33 4.93 22.87 0.11 -0.21 16 14 O -0.28 -11.76 9.01 9.98 0.09 -11.67 16 15 C 0.46 21.30 7.91 71.24 0.56 21.86 16 16 O -0.53 -28.76 15.75 20.77 0.33 -28.43 16 17 C -0.09 -4.09 5.75 29.85 0.17 -3.92 16 18 C 0.04 2.51 4.26 29.85 0.13 2.64 16 19 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 20 H 0.08 4.15 7.74 -2.91 -0.02 4.13 16 21 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 22 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16 23 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 24 H -0.25 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.33 7.62 -2.39 -0.02 1.31 16 31 H 0.09 1.33 7.66 -2.38 -0.02 1.31 16 32 H 0.17 2.47 6.22 -2.91 -0.02 2.45 16 33 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.11 3.69 7.61 -2.91 -0.02 3.67 16 38 H 0.11 4.71 8.14 -2.39 -0.02 4.69 16 39 H 0.12 4.73 8.14 -2.39 -0.02 4.71 16 40 H -0.01 -0.69 8.10 -2.38 -0.02 -0.71 16 41 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 42 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -84.44 362.32 6.96 -77.48 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.02 Total: 13.14 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 3.99 Total: -26.12 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.28 Total: -59.35 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.36 Total: -51.90 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -84.44 6.96 -77.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291799967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.103 kcal (2) G-P(sol) polarization free energy of solvation -84.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds