Wall clock time and date at job start Tue Mar 31 2020 11:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48502 * 109.47264 * 274.24527 * 3 2 1 5 5 H 1.48502 * 109.47076 * 34.24275 * 3 2 1 6 6 H 1.48496 * 109.47484 * 154.24040 * 3 2 1 7 7 C 1.37880 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00335 * 353.15549 * 7 2 1 9 9 C 1.50703 * 119.99508 * 173.42753 * 7 2 1 10 10 C 1.52997 * 115.55345 * 302.21281 * 9 7 2 11 11 N 1.46501 * 109.47073 * 294.74768 * 10 9 7 12 12 C 1.34774 * 119.99943 * 184.74444 * 11 10 9 13 13 O 1.21581 * 120.00024 * 4.86487 * 12 11 10 14 14 C 1.47596 * 120.00114 * 184.86544 * 12 11 10 15 15 C 1.39777 * 120.08356 * 5.38207 * 14 12 11 16 16 C 1.37634 * 119.94462 * 179.97438 * 15 14 12 17 17 C 1.39171 * 120.09789 * 0.02562 * 16 15 14 18 18 C 1.39155 * 120.08383 * 0.02562 * 17 16 15 19 19 C 1.37662 * 120.11836 * 359.73625 * 18 17 16 20 20 C 1.50663 * 119.82456 * 179.97438 * 18 17 16 21 21 C 1.52918 * 109.50236 * 326.10634 * 20 18 17 22 22 C 1.50497 * 109.86749 * 48.51242 * 21 20 18 23 23 O 1.21279 * 119.59596 * 144.84387 * 22 21 20 24 24 N 1.34523 * 120.80595 * 324.81557 * 22 21 20 25 25 C 1.53004 * 117.49579 * 156.54412 * 9 7 2 26 26 C 1.52998 * 117.49678 * 87.88694 * 9 7 2 27 27 H 0.97001 * 120.00135 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47256 * 54.74516 * 10 9 7 29 29 H 1.08997 * 109.47401 * 174.74536 * 10 9 7 30 30 H 0.97006 * 120.00180 * 4.74336 * 11 10 9 31 31 H 1.08006 * 120.02576 * 359.97438 * 15 14 12 32 32 H 1.08002 * 119.95181 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.04040 * 180.27992 * 19 18 17 34 34 H 1.08998 * 109.47545 * 206.08891 * 20 18 17 35 35 H 1.09003 * 109.44955 * 86.10065 * 20 18 17 36 36 H 1.08995 * 109.40184 * 288.39244 * 21 20 18 37 37 H 1.08995 * 109.40319 * 168.63704 * 21 20 18 38 38 H 0.97002 * 119.72675 * 180.74950 * 24 22 21 39 39 H 1.09004 * 117.49386 * 0.02562 * 25 9 7 40 40 H 1.08992 * 117.49924 * 145.01612 * 25 9 7 41 41 H 1.08998 * 117.49707 * 214.97651 * 26 9 7 42 42 H 1.09001 * 117.50281 * 359.97104 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4069 2.0983 -1.3962 5 1 1.4943 2.6251 0.7878 6 1 3.5886 1.4160 0.6084 7 6 2.0046 -1.1941 0.0005 8 1 1.4704 -2.1260 0.1124 9 6 3.5042 -1.1983 -0.1489 10 6 4.0429 -0.5329 -1.4168 11 7 3.6113 -1.2966 -2.5902 12 6 4.0483 -0.9509 -3.8173 13 8 4.8689 -0.0625 -3.9425 14 6 3.5308 -1.6507 -5.0093 15 6 2.5069 -2.5932 -4.8790 16 6 2.0261 -3.2437 -5.9925 17 6 2.5583 -2.9649 -7.2479 18 6 3.5785 -2.0279 -7.3805 19 6 4.0607 -1.3700 -6.2716 20 6 4.1508 -1.7310 -8.7422 21 6 4.1406 -3.0043 -9.5890 22 6 2.7879 -3.6593 -9.5113 23 8 2.3401 -4.2262 -10.4855 24 7 2.0697 -3.6242 -8.3744 25 6 4.2643 -2.4121 0.3896 26 6 4.3413 -1.0721 1.1255 27 1 -0.4850 0.8400 -0.0004 28 1 3.6588 0.4848 -1.4844 29 1 5.1320 -0.5085 -1.3797 30 1 3.0110 -2.0512 -2.4839 31 1 2.0933 -2.8107 -3.9053 32 1 1.2346 -3.9717 -5.8920 33 1 4.8494 -0.6397 -6.3765 34 1 5.1750 -1.3736 -8.6359 35 1 3.5477 -0.9654 -9.2304 36 1 4.8985 -3.6931 -9.2161 37 1 4.3616 -2.7513 -10.6259 38 1 1.2043 -4.0610 -8.3385 39 1 3.6796 -3.2077 0.8515 40 1 5.1483 -2.7364 -0.1593 41 1 5.2761 -0.5153 1.0604 42 1 3.8076 -0.9855 2.0719 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404106192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:48 Heat of formation + Delta-G solvation = -49.758696 kcal Electronic energy + Delta-G solvation = -25349.208368 eV Core-core repulsion = 21679.327995 eV Total energy + Delta-G solvation = -3669.880373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.12316 -40.92148 -39.50428 -38.60778 -36.30866 -35.22117 -34.82811 -34.28651 -31.20316 -30.99716 -28.56866 -27.11301 -25.62700 -24.58757 -23.71022 -23.17579 -21.82950 -21.11842 -20.06112 -19.17872 -18.80144 -18.14498 -17.87371 -17.17778 -17.11688 -16.66885 -16.04026 -16.01890 -15.61457 -15.37105 -15.08399 -14.91061 -14.77049 -14.70343 -14.27136 -14.15533 -14.06991 -13.84571 -13.45448 -13.01631 -12.84982 -12.62658 -12.49188 -12.16765 -12.08425 -12.00072 -11.77058 -11.50300 -11.18324 -11.12685 -10.98195 -10.71343 -10.35919 -9.96834 -9.92103 -9.13417 -8.32383 -6.34041 -0.32896 0.27646 1.26233 1.30248 1.37659 1.46412 1.91096 1.94421 2.23637 2.32727 2.80091 2.97328 3.29387 3.38314 3.60636 3.66423 3.79934 3.96302 4.00564 4.14928 4.23528 4.28611 4.29197 4.39598 4.47451 4.52816 4.77064 4.79356 4.86715 4.89000 4.93491 5.03017 5.06441 5.06843 5.15940 5.25819 5.33468 5.48618 5.54962 5.58138 5.68503 5.70824 6.04883 6.30030 6.63504 6.74214 6.85851 7.23727 7.33420 8.81775 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.003119 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.791051 B = 8974.116258 C = 9184.929095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.038 3.962 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.230 1.230 7 C -0.475 4.475 8 H 0.050 0.950 9 C -0.042 4.042 10 C 0.158 3.842 11 N -0.697 5.697 12 C 0.548 3.452 13 O -0.590 6.590 14 C -0.168 4.168 15 C -0.054 4.054 16 C -0.150 4.150 17 C 0.182 3.818 18 C -0.132 4.132 19 C -0.028 4.028 20 C -0.073 4.073 21 C -0.133 4.133 22 C 0.520 3.480 23 O -0.567 6.567 24 N -0.654 5.654 25 C -0.154 4.154 26 C -0.186 4.186 27 H 0.265 0.735 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.412 0.588 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.418 0.582 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.929 -6.874 -15.487 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.161 4.161 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.153 1.153 7 C -0.513 4.513 8 H 0.068 0.932 9 C -0.043 4.043 10 C 0.034 3.966 11 N -0.347 5.347 12 C 0.338 3.662 13 O -0.473 6.473 14 C -0.172 4.172 15 C -0.074 4.074 16 C -0.171 4.171 17 C 0.084 3.916 18 C -0.134 4.134 19 C -0.047 4.047 20 C -0.110 4.110 21 C -0.172 4.172 22 C 0.310 3.690 23 O -0.446 6.446 24 N -0.298 5.298 25 C -0.191 4.191 26 C -0.224 4.224 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.250 0.750 31 H 0.158 0.842 32 H 0.178 0.822 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.258 0.742 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.257 -6.396 -16.142 19.677 hybrid contribution -1.065 0.563 0.654 1.371 sum 8.192 -5.834 -15.488 18.467 Atomic orbital electron populations 1.69993 1.07798 1.27795 1.51872 1.25492 0.94877 1.01722 0.93996 0.86290 0.81299 0.80611 0.77547 1.21666 1.22477 1.15274 1.20393 0.88908 0.93075 1.48919 0.93226 1.19447 0.92708 1.01163 0.91013 1.20946 0.97502 0.93499 0.84680 1.45777 1.49185 1.34150 1.05543 1.18698 0.80888 0.82682 0.83961 1.90695 1.35582 1.33892 1.87150 1.19841 1.01822 1.02138 0.93392 1.21320 0.93362 0.92757 0.99918 1.20924 1.03503 1.03105 0.89543 1.17879 0.94566 0.92388 0.86731 1.19629 0.98963 0.97961 0.96890 1.20964 0.97663 0.96609 0.89512 1.20513 1.04065 0.97108 0.89326 1.21776 0.92494 0.98154 1.04794 1.21389 0.88353 0.78351 0.80879 1.90772 1.72387 1.45391 1.36046 1.43550 1.22578 1.53082 1.10566 1.22834 1.01592 0.91012 1.03671 1.23111 1.01273 1.01056 0.96933 0.92629 0.95067 0.91714 0.75045 0.84240 0.82209 0.84006 0.86584 0.89100 0.86157 0.85559 0.74243 0.89449 0.88227 0.89034 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.90 13.96 21.45 0.30 -54.60 16 2 C 0.04 2.08 5.46 84.66 0.46 2.55 16 3 Si 0.91 43.59 24.64 68.60 1.69 45.28 16 4 H -0.29 -14.25 6.96 99.48 0.69 -13.56 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.23 -9.98 6.18 99.48 0.61 -9.37 16 7 C -0.48 -24.16 9.20 25.60 0.24 -23.92 16 8 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 9 C -0.04 -1.74 0.85 -52.93 -0.04 -1.78 16 10 C 0.16 6.40 5.07 86.38 0.44 6.84 16 11 N -0.70 -25.54 5.42 -466.23 -2.52 -28.06 16 12 C 0.55 19.67 7.75 86.71 0.67 20.34 16 13 O -0.59 -24.69 16.33 -3.97 -0.06 -24.76 16 14 C -0.17 -4.66 5.88 -20.07 -0.12 -4.78 16 15 C -0.05 -1.26 9.50 22.50 0.21 -1.05 16 16 C -0.15 -2.73 9.89 22.35 0.22 -2.51 16 17 C 0.18 3.21 6.51 38.39 0.25 3.46 16 18 C -0.13 -2.35 5.65 -19.79 -0.11 -2.47 16 19 C -0.03 -0.64 9.22 22.50 0.21 -0.44 16 20 C -0.07 -0.85 5.99 29.81 0.18 -0.67 16 21 C -0.13 -1.49 6.08 29.76 0.18 -1.31 16 22 C 0.52 9.42 7.71 87.63 0.68 10.10 16 23 O -0.57 -14.58 17.91 -3.03 -0.05 -14.63 16 24 N -0.65 -10.51 5.34 -304.02 -1.62 -12.14 16 25 C -0.15 -5.25 9.96 30.62 0.30 -4.94 16 26 C -0.19 -6.83 8.80 30.62 0.27 -6.56 16 27 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.03 1.43 4.13 -2.39 -0.01 1.43 16 29 H 0.06 2.47 8.06 -2.39 -0.02 2.45 16 30 H 0.41 13.92 6.43 -92.70 -0.60 13.33 16 31 H 0.14 3.21 6.47 -2.91 -0.02 3.19 16 32 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.14 3.22 7.65 -2.91 -0.02 3.20 16 34 H 0.12 0.92 8.06 -2.39 -0.02 0.90 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.42 5.63 8.82 -92.71 -0.82 4.81 16 39 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 40 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -70.65 348.39 1.32 -69.33 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.44 Total: 26.71 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.03 Total: -7.14 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.85 Total: -94.80 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.12 Total: -39.39 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.69 Total: 45.28 kcal Total: -70.65 1.32 -69.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404106192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.572 kcal (2) G-P(sol) polarization free energy of solvation -70.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds