Wall clock time and date at job start Tue Mar 31 2020 11:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48494 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46928 * 300.00069 * 3 2 1 6 6 H 1.48505 * 109.46854 * 59.99887 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34879 * 124.15493 * 90.00433 * 12 11 10 14 14 O 1.21230 * 127.06751 * 358.94046 * 13 12 11 15 15 C 1.51500 * 105.86409 * 178.94157 * 13 12 11 16 16 H 1.09005 * 112.06742 * 242.01291 * 15 13 12 17 17 C 1.52821 * 109.97140 * 116.20107 * 15 13 12 18 18 C 1.50660 * 111.10347 * 203.26301 * 17 15 13 19 19 C 1.39196 * 116.94418 * 201.84960 * 18 17 15 20 20 C 1.37827 * 120.74068 * 181.51007 * 19 18 17 21 21 C 1.38264 * 119.86299 * 359.94223 * 20 19 18 22 22 C 1.37945 * 119.60012 * 359.68616 * 21 20 19 23 23 C 1.37597 * 123.84688 * 22.75473 * 18 17 15 24 24 C 1.51200 * 122.51287 * 358.07558 * 23 18 17 25 25 N 1.46128 * 108.52709 * 7.22033 * 24 23 18 26 26 C 1.33371 * 130.31931 * 140.37717 * 25 24 23 27 27 O 1.21541 * 123.92425 * 4.07478 * 26 25 24 28 28 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 30 30 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 31 31 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 32 32 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 33 33 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 34 34 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 35 35 H 1.08995 * 109.14819 * 323.67062 * 17 15 13 36 36 H 1.08996 * 109.14956 * 82.83625 * 17 15 13 37 37 H 1.08000 * 119.62831 * 1.49112 * 19 18 17 38 38 H 1.08003 * 120.06710 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.19691 * 179.70256 * 21 20 19 40 40 H 1.08004 * 119.72992 * 180.08687 * 22 21 20 41 41 H 1.09001 * 109.62860 * 247.50999 * 24 23 18 42 42 H 1.09000 * 109.78853 * 127.03325 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 2.9250 -6.6763 1.1153 14 8 2.6859 -6.3681 2.2632 15 6 3.8388 -7.7870 0.6394 16 1 3.4979 -8.7679 0.9705 17 6 5.2780 -7.4965 1.0634 18 6 6.2605 -8.2162 0.1766 19 6 7.5344 -8.4345 0.6936 20 6 8.5040 -9.0579 -0.0620 21 6 8.2130 -9.4741 -1.3480 22 6 6.9497 -9.2668 -1.8618 23 6 5.9716 -8.6430 -1.0992 24 6 4.6074 -8.4647 -1.7264 25 7 3.7895 -7.6462 -0.8339 26 6 2.9162 -6.6768 -1.1103 27 8 2.5990 -6.3507 -2.2373 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6044 0.8895 32 1 2.8719 -3.6044 -0.8905 33 1 0.8531 -5.0451 -0.8897 34 1 0.8538 -5.0446 0.8903 35 1 5.4595 -6.4236 1.0010 36 1 5.4201 -7.8230 2.0936 37 1 7.7656 -8.1116 1.6979 38 1 9.4890 -9.2214 0.3499 39 1 8.9702 -9.9588 -1.9465 40 1 6.7197 -9.5923 -2.8656 41 1 4.1373 -9.4385 -1.8636 42 1 4.7069 -7.9671 -2.6911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431404236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:29 Heat of formation + Delta-G solvation = -19.907146 kcal Electronic energy + Delta-G solvation = -25655.751256 eV Core-core repulsion = 21987.165344 eV Total energy + Delta-G solvation = -3668.585913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.59941 -39.90981 -38.56309 -36.70314 -35.76172 -33.92518 -33.31029 -32.35915 -31.03343 -29.93331 -27.42316 -26.19137 -25.00716 -23.29651 -22.72723 -22.63143 -20.85818 -20.30102 -19.83368 -17.55918 -17.31532 -16.80451 -16.38261 -16.24508 -15.54815 -15.32228 -15.21859 -14.79516 -14.68276 -14.61052 -14.39249 -13.95925 -13.80409 -13.58147 -13.31095 -13.17444 -12.52234 -12.44729 -12.11605 -12.06681 -11.62481 -11.48514 -11.43610 -11.01019 -10.85708 -10.81793 -10.51364 -10.11304 -9.80336 -9.75559 -9.40313 -9.27455 -9.07778 -9.00271 -8.93490 -8.34022 -5.98910 -4.00947 0.93464 0.97752 1.64152 2.03934 2.89663 3.07715 3.33013 3.33486 3.40124 3.44833 3.79446 4.06340 4.28690 4.45711 4.47989 4.56987 4.63138 4.71934 4.86777 4.99078 5.11286 5.21255 5.25527 5.33162 5.37579 5.41035 5.58377 5.64957 5.66978 5.73042 5.75861 6.01002 6.04893 6.08545 6.14998 6.37968 6.56455 6.60171 6.75575 7.01969 7.18685 7.40528 7.65746 7.78874 7.99698 8.13163 8.42411 9.05039 9.62864 11.12614 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.003009 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.869736 B = 9303.884211 C = 9711.174204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.572 5.572 13 C 0.524 3.476 14 O -0.463 6.463 15 C 0.090 3.910 16 H 0.134 0.866 17 C -0.078 4.078 18 C -0.066 4.066 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.097 4.097 24 C 0.194 3.806 25 N -0.626 5.626 26 C 0.709 3.291 27 O -0.536 6.536 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.087 0.913 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.678 -24.518 -0.269 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.161 4.161 11 C -0.003 4.003 12 N -0.316 5.316 13 C 0.310 3.690 14 O -0.332 6.332 15 C -0.017 4.017 16 H 0.152 0.848 17 C -0.116 4.116 18 C -0.067 4.067 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.097 4.097 24 C 0.073 3.927 25 N -0.365 5.365 26 C 0.411 3.589 27 O -0.409 6.409 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.105 0.895 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.188 -24.022 -0.383 27.902 hybrid contribution 0.518 0.961 0.006 1.091 sum 14.706 -23.061 -0.377 27.354 Atomic orbital electron populations 1.69972 1.06027 1.26534 1.50887 1.25017 0.94869 0.99272 0.95293 0.86521 0.80106 0.83728 0.77575 1.19767 1.20969 1.20984 1.21224 0.93044 0.90876 1.50541 0.92674 1.19031 0.93785 0.90833 0.97579 1.22002 0.99935 0.93078 1.01075 1.22116 0.90216 0.83713 1.04304 1.46741 1.43720 1.34002 1.07146 1.20660 0.80311 0.82848 0.85179 1.90815 1.59160 1.65313 1.17944 1.22386 0.96905 1.00499 0.81917 0.84816 1.20613 0.89596 1.01759 0.99635 1.19329 0.94937 0.98630 0.93769 1.21240 0.92527 0.99219 1.00308 1.21097 0.99294 0.98469 0.94633 1.21097 0.96592 1.00125 0.95826 1.20997 0.92977 0.99135 0.99766 1.19803 0.95623 1.00173 0.94143 1.20229 0.85588 0.94588 0.92280 1.47358 1.43908 1.38543 1.06703 1.15476 0.79424 0.79324 0.84675 1.90998 1.63090 1.66576 1.20227 0.93017 0.96130 0.96215 0.92880 0.92661 0.88804 0.89016 0.89117 0.88117 0.85701 0.85830 0.85715 0.85510 0.89485 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.67 4.97 -27.89 -0.14 0.53 16 10 C -0.12 -2.65 5.48 -26.73 -0.15 -2.80 16 11 C 0.12 2.10 5.71 -4.04 -0.02 2.08 16 12 N -0.57 -9.15 2.61 -120.97 -0.32 -9.47 16 13 C 0.52 7.44 7.47 -10.55 -0.08 7.36 16 14 O -0.46 -7.71 17.76 5.60 0.10 -7.62 16 15 C 0.09 0.92 4.06 -67.91 -0.28 0.65 16 16 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.08 -0.71 5.29 -27.99 -0.15 -0.86 16 18 C -0.07 -0.59 5.75 -104.52 -0.60 -1.19 16 19 C -0.11 -0.89 9.54 -39.38 -0.38 -1.26 16 20 C -0.12 -0.81 10.04 -39.72 -0.40 -1.21 16 21 C -0.12 -0.79 10.06 -39.68 -0.40 -1.19 16 22 C -0.11 -0.79 9.61 -39.47 -0.38 -1.17 16 23 C -0.10 -0.83 5.84 -104.39 -0.61 -1.43 16 24 C 0.19 1.72 6.75 -5.15 -0.03 1.68 16 25 N -0.63 -7.31 3.01 -173.61 -0.52 -7.83 16 26 C 0.71 11.14 8.38 -88.79 -0.74 10.40 16 27 O -0.54 -10.22 17.34 5.33 0.09 -10.13 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.09 1.70 7.85 -51.93 -0.41 1.29 16 34 H 0.09 1.60 8.01 -51.93 -0.42 1.18 16 35 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 36 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.13 0.77 8.04 -52.49 -0.42 0.35 16 38 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.64 8.05 -52.48 -0.42 0.22 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.11 0.97 8.11 -51.93 -0.42 0.55 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -34.88 355.45 -10.18 -45.06 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.84 Total: -3.70 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -4.76 Total: -2.25 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.10 Total: -43.84 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.19 Total: -17.74 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.88 -10.18 -45.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431404236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.154 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds