Wall clock time and date at job start Tue Mar 31 2020 10:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35042 * 126.03304 * 2 1 4 4 C 1.35374 * 107.72573 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 126.04420 * 179.97438 * 4 3 2 6 6 C 1.39928 * 107.90796 * 0.02562 * 4 3 2 7 7 C 1.50701 * 125.89484 * 179.97438 * 6 4 3 8 8 N 1.46497 * 109.47501 * 89.99642 * 7 6 4 9 9 C 1.34774 * 120.00456 * 180.02562 * 8 7 6 10 10 O 1.21586 * 119.99911 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00212 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00234 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47097 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47152 * 299.99987 * 13 12 11 15 15 C 1.52999 * 109.47112 * 60.00301 * 13 12 11 16 16 C 1.50702 * 109.46783 * 180.02562 * 13 12 11 17 17 H 1.07997 * 120.00306 * 359.97438 * 16 13 12 18 18 C 1.37875 * 119.99700 * 180.02562 * 16 13 12 19 19 N 1.31518 * 120.00264 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 120.00008 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47091 * 89.99309 * 20 18 16 22 22 H 1.48495 * 109.46834 * 209.99619 * 20 18 16 23 23 H 1.48503 * 109.46860 * 329.99533 * 20 18 16 24 24 N 1.30847 * 108.21156 * 359.75431 * 6 4 3 25 25 H 1.09001 * 109.47060 * 90.00497 * 1 2 3 26 26 H 1.09004 * 109.47073 * 209.99986 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.00068 * 1 2 3 28 28 H 1.08001 * 126.13792 * 359.94146 * 3 2 1 29 29 H 1.09000 * 109.47612 * 210.00305 * 7 6 4 30 30 H 1.09010 * 109.46931 * 329.99935 * 7 6 4 31 31 H 0.97005 * 119.99192 * 0.02562 * 8 7 6 32 32 H 0.97005 * 119.99436 * 359.97438 * 11 9 8 33 33 H 1.09000 * 109.46931 * 299.99815 * 12 11 9 34 34 H 1.08996 * 109.46563 * 60.00213 * 12 11 9 35 35 H 1.09003 * 109.47174 * 60.00594 * 14 13 12 36 36 H 1.08998 * 109.47170 * 179.97438 * 14 13 12 37 37 H 1.08996 * 109.47610 * 300.00414 * 14 13 12 38 38 H 1.09000 * 109.47581 * 59.99730 * 15 13 12 39 39 H 1.08998 * 109.47119 * 180.02562 * 15 13 12 40 40 H 1.09003 * 109.47329 * 299.99476 * 15 13 12 41 41 H 0.96999 * 120.00337 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.0921 0.0000 4 6 3.5447 0.6668 0.0006 5 17 4.9554 1.6786 0.0002 6 6 3.5349 -0.7324 0.0003 7 6 4.7496 -1.6245 0.0003 8 7 5.1432 -1.9137 1.3814 9 6 6.2115 -2.6977 1.6276 10 8 6.8483 -3.1652 0.7034 11 7 6.5732 -2.9642 2.8982 12 6 7.7341 -3.8168 3.1659 13 6 7.9258 -3.9577 4.6773 14 6 8.1549 -2.5761 5.2934 15 6 6.6760 -4.5899 5.2931 16 6 9.1203 -4.8343 4.9525 17 1 9.6860 -5.2497 4.1316 18 6 9.4905 -5.1068 6.2524 19 7 8.8014 -4.6014 7.2521 20 14 10.9716 -6.1928 6.5937 21 1 12.1918 -5.3513 6.6850 22 1 10.7711 -6.9148 7.8757 23 1 11.1294 -7.1754 5.4915 24 7 2.2892 -1.1327 0.0050 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9288 2.1202 -0.0009 29 1 4.5157 -2.5568 -0.5138 30 1 5.5693 -1.1221 -0.5135 31 1 4.6348 -1.5409 2.1187 32 1 6.0649 -2.5914 3.6356 33 1 7.5711 -4.8009 2.7266 34 1 8.6245 -3.3661 2.7276 35 1 7.2911 -1.9418 5.0943 36 1 8.2909 -2.6765 6.3701 37 1 9.0452 -2.1257 4.8547 38 1 6.5127 -5.5742 4.8542 39 1 6.8123 -4.6899 6.3699 40 1 5.8122 -3.9556 5.0940 41 1 9.0620 -4.7928 8.1666 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458985147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:44 Heat of formation + Delta-G solvation = 18.532128 kcal Electronic energy + Delta-G solvation = -23496.635272 eV Core-core repulsion = 19859.576113 eV Total energy + Delta-G solvation = -3637.059159 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.44650 -40.96987 -38.27078 -37.41454 -36.21316 -34.97610 -33.98089 -32.61069 -31.17297 -29.34323 -27.53617 -27.40952 -26.76451 -25.61679 -22.37119 -22.06076 -21.36210 -20.55492 -19.57965 -18.18490 -17.74359 -17.27233 -16.68064 -16.64580 -16.46097 -15.71089 -15.43528 -15.31735 -15.24151 -14.73117 -14.63347 -14.14215 -13.96109 -13.84147 -13.56898 -13.33638 -13.14844 -13.07313 -12.66110 -12.60624 -12.57109 -12.42447 -12.22249 -12.11610 -11.52627 -11.45541 -11.42382 -11.14758 -10.68260 -10.54926 -10.39793 -10.31516 -9.67065 -9.47988 -7.99956 -6.15395 0.57594 0.99329 1.14883 1.44415 1.46986 1.55555 1.73926 2.04884 2.21481 2.48696 3.23667 3.33555 3.45835 3.57088 4.00641 4.25242 4.43301 4.44023 4.47169 4.53816 4.57399 4.72697 4.74429 4.77428 5.03038 5.08624 5.08921 5.13659 5.23363 5.38386 5.41964 5.65131 5.69724 5.69947 5.84623 6.03393 6.17614 6.24553 6.39361 6.46306 6.88949 7.13358 7.52127 7.62713 8.99126 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.002538 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.046314 B =11027.544211 C =11264.834429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.359 5.359 3 C 0.091 3.909 4 C -0.196 4.196 5 Cl -0.040 7.040 6 C 0.064 3.936 7 C 0.226 3.774 8 N -0.727 5.727 9 C 0.703 3.297 10 O -0.637 6.637 11 N -0.725 5.725 12 C 0.168 3.832 13 C 0.053 3.947 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.527 4.527 17 H 0.045 0.955 18 C 0.028 3.972 19 N -0.900 5.900 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.283 1.283 23 H -0.276 1.276 24 N -0.293 5.293 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.227 0.773 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.404 0.596 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.178 15.863 -12.328 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.141 5.141 3 C -0.058 4.058 4 C -0.235 4.235 5 Cl -0.012 7.012 6 C -0.102 4.102 7 C 0.100 3.900 8 N -0.384 5.384 9 C 0.402 3.598 10 O -0.519 6.519 11 N -0.380 5.380 12 C 0.043 3.957 13 C 0.052 3.948 14 C -0.178 4.178 15 C -0.178 4.178 16 C -0.566 4.566 17 H 0.064 0.936 18 C -0.172 4.172 19 N -0.539 5.539 20 Si 0.772 3.228 21 H -0.205 1.205 22 H -0.208 1.208 23 H -0.201 1.201 24 N -0.118 5.118 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.144 0.856 28 H 0.243 0.757 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.242 0.758 32 H 0.241 0.759 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.459 14.506 -12.966 28.233 hybrid contribution 1.245 0.290 0.878 1.551 sum -19.214 14.796 -12.088 27.096 Atomic orbital electron populations 1.22418 0.70273 1.06710 1.05431 1.48768 1.08318 1.02704 1.54293 1.22858 0.88452 0.95526 0.98939 1.20851 0.89863 0.90624 1.22146 1.98352 1.38124 1.66943 1.97797 1.21970 0.93239 0.92691 1.02337 1.19175 0.90919 0.97013 0.82917 1.44770 1.31107 1.53865 1.08666 1.16027 0.80850 0.79379 0.83497 1.90864 1.57562 1.58780 1.44654 1.45187 1.33279 1.54056 1.05484 1.21144 0.85355 0.91536 0.97622 1.18351 0.94235 0.93893 0.88336 1.21662 0.97533 0.95829 1.02737 1.21662 0.95766 0.97576 1.02753 1.21278 1.12735 1.30448 0.92126 0.93648 1.25454 0.98741 0.96900 0.96093 1.69912 1.40039 1.45106 0.98829 0.85753 0.80444 0.79237 0.77335 1.20482 1.20835 1.20082 1.77467 1.00664 1.09574 1.24087 0.88686 0.88931 0.85596 0.75694 0.90936 0.89859 0.75801 0.75905 0.94560 0.94455 0.94593 0.91889 0.96267 0.96324 0.91871 0.94638 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.33 11.47 127.77 1.47 1.80 16 2 N -0.36 -4.80 4.02 -369.42 -1.48 -6.28 16 3 C 0.09 1.07 11.47 83.54 0.96 2.03 16 4 C -0.20 -3.61 6.64 22.02 0.15 -3.46 16 5 Cl -0.04 -0.78 29.01 -2.72 -0.08 -0.86 16 6 C 0.06 1.42 6.59 43.12 0.28 1.70 16 7 C 0.23 5.94 6.10 85.63 0.52 6.47 16 8 N -0.73 -20.46 5.55 -482.29 -2.68 -23.14 16 9 C 0.70 25.90 8.57 179.06 1.53 27.44 16 10 O -0.64 -28.73 16.34 -3.99 -0.07 -28.80 16 11 N -0.72 -26.57 4.96 -478.54 -2.37 -28.95 16 12 C 0.17 7.44 4.50 86.38 0.39 7.83 16 13 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 14 C -0.12 -5.44 8.08 71.98 0.58 -4.85 16 15 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 16 C -0.53 -28.37 8.01 25.60 0.21 -28.17 16 17 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 18 C 0.03 1.48 5.15 84.65 0.44 1.91 16 19 N -0.90 -48.55 9.35 21.45 0.20 -48.35 16 20 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 N -0.29 -6.36 12.57 -47.34 -0.60 -6.96 16 25 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.23 0.62 8.06 -2.91 -0.02 0.59 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 2.28 8.01 -2.38 -0.02 2.26 16 31 H 0.41 9.64 8.48 -92.70 -0.79 8.85 16 32 H 0.40 12.94 6.18 -92.70 -0.57 12.37 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 36 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 40 H 0.03 1.36 6.86 -2.39 -0.02 1.34 16 41 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -69.74 355.60 1.74 -68.00 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.29 Total: 19.84 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 7.08 Total: 10.28 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -6.93 Total: -113.67 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.07 Total: -28.80 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -69.74 1.74 -68.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458985147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.532 kcal (2) G-P(sol) polarization free energy of solvation -69.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds