Wall clock time and date at job start Tue Mar 31 2020 11:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00252 * 2 1 4 4 H 1.48496 * 109.47307 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46934 * 300.00283 * 3 2 1 6 6 H 1.48496 * 109.46842 * 59.99725 * 3 2 1 7 7 C 1.37876 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00015 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.52662 * 300.08302 * 9 7 2 11 11 C 1.53039 * 109.49815 * 180.02562 * 9 7 2 12 12 C 1.53044 * 109.53805 * 178.68431 * 11 9 7 13 13 C 1.53191 * 109.31319 * 61.36747 * 12 11 9 14 14 N 1.46928 * 108.77406 * 305.36365 * 13 12 11 15 15 C 1.34773 * 120.63184 * 233.58505 * 14 13 12 16 16 O 1.21595 * 120.00003 * 185.17695 * 15 14 13 17 17 N 1.34777 * 119.99896 * 5.17709 * 15 14 13 18 18 C 1.40151 * 119.99772 * 185.22734 * 17 15 14 19 19 C 1.39324 * 119.93269 * 213.19584 * 18 17 15 20 20 C 1.37740 * 120.62138 * 179.74945 * 19 18 17 21 21 C 1.38949 * 120.05338 * 0.49881 * 20 19 18 22 22 O 1.34919 * 133.31314 * 179.84627 * 21 20 19 23 23 C 1.34432 * 110.89067 * 179.70957 * 22 21 20 24 24 C 1.34001 * 110.15297 * 359.97438 * 23 22 21 25 25 C 1.40465 * 119.43680 * 359.53091 * 21 20 19 26 26 C 1.38305 * 119.94139 * 33.22000 * 18 17 15 27 27 C 1.46930 * 118.73844 * 53.86140 * 14 13 12 28 28 H 0.97000 * 120.00038 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46206 * 58.66400 * 11 9 7 30 30 H 1.09000 * 109.44784 * 298.69922 * 11 9 7 31 31 H 1.08996 * 109.50034 * 301.41714 * 12 11 9 32 32 H 1.09004 * 109.49527 * 181.31501 * 12 11 9 33 33 H 1.08994 * 109.59043 * 185.57903 * 13 12 11 34 34 H 1.09005 * 109.70571 * 65.21855 * 13 12 11 35 35 H 0.97000 * 120.00409 * 5.22265 * 17 15 14 36 36 H 1.07996 * 119.68768 * 359.97438 * 19 18 17 37 37 H 1.07998 * 119.97238 * 180.02562 * 20 19 18 38 38 H 1.07997 * 124.92276 * 180.02562 * 23 22 21 39 39 H 1.07997 * 126.89902 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.22408 * 0.02562 * 26 18 17 41 41 H 1.09003 * 109.58315 * 65.92857 * 27 14 13 42 42 H 1.08996 * 109.58755 * 186.35146 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6232 -2.5574 0.8886 11 6 2.2449 -3.6628 -0.0005 12 6 1.4808 -4.9885 0.0326 13 6 0.6056 -5.1003 -1.2197 14 7 -0.2529 -3.9109 -1.3043 15 6 -1.5892 -4.0360 -1.4268 16 8 -2.2798 -3.0486 -1.5904 17 7 -2.1602 -5.2554 -1.3681 18 6 -3.5342 -5.3980 -1.6044 19 6 -4.2580 -6.3778 -0.9282 20 6 -5.6099 -6.5270 -1.1458 21 6 -6.2636 -5.7034 -2.0541 22 8 -7.5444 -5.6160 -2.4689 23 6 -7.6887 -4.6344 -3.3760 24 6 -6.5115 -4.0335 -3.5971 25 6 -5.5361 -4.7151 -2.7375 26 6 -4.1690 -4.5661 -2.5088 27 6 0.3736 -2.5827 -1.2589 28 1 -0.4850 0.8400 -0.0004 29 1 2.8871 -3.5919 0.8772 30 1 2.8559 -3.6183 -0.9021 31 1 0.8505 -5.0231 0.9211 32 1 2.1896 -5.8164 0.0561 33 1 -0.0143 -5.9944 -1.1537 34 1 1.2377 -5.1584 -2.1059 35 1 -1.6201 -6.0345 -1.1623 36 1 -3.7550 -7.0240 -0.2242 37 1 -6.1608 -7.2897 -0.6156 38 1 -8.6186 -4.3681 -3.8562 39 1 -6.3190 -3.2133 -4.2728 40 1 -3.6094 -3.8066 -3.0344 41 1 0.9889 -2.4384 -2.1470 42 1 -0.3994 -1.8153 -1.2187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529277747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:52 Heat of formation + Delta-G solvation = -10.456181 kcal Electronic energy + Delta-G solvation = -25763.316965 eV Core-core repulsion = 22095.140876 eV Total energy + Delta-G solvation = -3668.176088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.32442 -41.70260 -39.36572 -38.09774 -35.76334 -34.99374 -33.70158 -33.43970 -31.55302 -30.46156 -29.90739 -27.06157 -26.26541 -24.40496 -23.52753 -23.15435 -22.28154 -21.70865 -20.49246 -19.47292 -18.70468 -18.38483 -18.00655 -17.36391 -17.01595 -16.67236 -16.37148 -16.01839 -15.39810 -15.23966 -15.20617 -14.89352 -14.58726 -14.31688 -14.08284 -13.97410 -13.75393 -13.60926 -13.50571 -13.42083 -12.92321 -12.67193 -12.30390 -12.22224 -12.19095 -11.85101 -11.65002 -11.37779 -11.14255 -11.12372 -10.96034 -10.82733 -10.53573 -9.52344 -9.21382 -8.85824 -8.11575 -6.28472 -0.03640 0.27013 1.38769 1.40971 1.45508 1.52814 1.58746 1.91682 2.07595 2.41247 2.75595 2.87771 3.17993 3.58337 3.75872 3.98572 4.07401 4.14520 4.24639 4.29285 4.31062 4.42282 4.59236 4.63107 4.71657 4.78254 4.81123 4.88074 5.02033 5.10480 5.17206 5.25322 5.26984 5.29775 5.30899 5.35659 5.48173 5.54686 5.61414 5.77358 5.87126 5.94252 6.10263 6.20343 6.33883 6.84796 6.97575 7.41766 7.52967 8.91927 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.003327 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.488687 B = 8414.431638 C = 9631.936645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.013 1.013 11 C -0.106 4.106 12 C -0.125 4.125 13 C 0.106 3.894 14 N -0.620 5.620 15 C 0.692 3.308 16 O -0.621 6.621 17 N -0.671 5.671 18 C 0.144 3.856 19 C -0.112 4.112 20 C -0.077 4.077 21 C 0.011 3.989 22 O -0.201 6.201 23 C 0.029 3.971 24 C -0.244 4.244 25 C -0.137 4.137 26 C -0.109 4.109 27 C 0.143 3.857 28 H 0.258 0.742 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.422 0.578 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.256 0.744 39 H 0.163 0.837 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 -18.482 -4.835 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.019 3.981 10 H 0.005 0.995 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.016 4.016 14 N -0.355 5.355 15 C 0.394 3.606 16 O -0.500 6.500 17 N -0.323 5.323 18 C 0.049 3.951 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.036 4.036 22 O -0.103 6.103 23 C -0.035 4.035 24 C -0.263 4.263 25 C -0.138 4.138 26 C -0.131 4.131 27 C 0.020 3.980 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.264 0.736 36 H 0.193 0.807 37 H 0.189 0.811 38 H 0.272 0.728 39 H 0.181 0.819 40 H 0.124 0.876 41 H 0.055 0.945 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.903 -17.827 -4.849 20.961 hybrid contribution 0.780 1.664 -0.084 1.840 sum -9.123 -16.163 -4.932 19.204 Atomic orbital electron populations 1.70105 1.07474 1.27138 1.50756 1.25904 0.95512 1.02983 0.94649 0.85520 0.79366 0.79512 0.77365 1.18261 1.20979 1.20931 1.21562 0.93338 0.91475 1.50863 0.91849 1.18999 0.93092 0.93872 0.92120 0.99479 1.21518 0.97649 0.94176 1.01032 1.21917 0.99045 0.98259 0.97103 1.21963 0.93678 0.86389 0.99555 1.47731 1.03498 1.09449 1.74827 1.16170 0.82795 0.83425 0.78216 1.90919 1.62623 1.38513 1.57984 1.42585 1.07174 1.08431 1.74140 1.17562 0.83228 0.98283 0.96027 1.20958 0.92755 0.99541 0.99988 1.20062 0.93030 0.99524 0.96983 1.19928 0.82559 1.00045 1.01059 1.84001 1.26508 1.49181 1.50568 1.24775 1.00886 0.87231 0.90656 1.22820 0.92526 1.05412 1.05562 1.20119 0.94224 0.98866 1.00610 1.20422 0.93334 1.00612 0.98697 1.21727 0.96748 0.81571 0.97925 0.93246 0.92868 0.92373 0.92847 0.87451 0.87905 0.89938 0.73650 0.80665 0.81059 0.72808 0.81896 0.87624 0.94480 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.51 11.41 21.45 0.24 -56.27 16 2 C 0.01 0.50 5.30 84.65 0.45 0.95 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 7 C -0.53 -29.38 8.56 25.60 0.22 -29.16 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.04 1.93 2.26 -11.32 -0.03 1.91 16 10 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 11 C -0.11 -3.96 5.10 30.62 0.16 -3.80 16 12 C -0.13 -3.42 6.08 30.67 0.19 -3.24 16 13 C 0.11 2.82 6.43 86.36 0.56 3.38 16 14 N -0.62 -24.69 2.97 -836.04 -2.48 -27.17 16 15 C 0.69 29.01 8.04 179.06 1.44 30.45 16 16 O -0.62 -33.01 13.45 -4.02 -0.05 -33.06 16 17 N -0.67 -20.31 5.25 -317.08 -1.66 -21.98 16 18 C 0.14 4.42 6.29 38.09 0.24 4.65 16 19 C -0.11 -2.46 9.93 22.41 0.22 -2.24 16 20 C -0.08 -1.64 10.05 22.32 0.22 -1.42 16 21 C 0.01 0.31 7.41 22.98 0.17 0.48 16 22 O -0.20 -4.70 10.59 -9.89 -0.10 -4.81 16 23 C 0.03 0.54 11.96 66.85 0.80 1.34 16 24 C -0.24 -6.22 11.14 23.54 0.26 -5.96 16 25 C -0.14 -4.32 6.39 -20.22 -0.13 -4.45 16 26 C -0.11 -3.94 8.70 22.57 0.20 -3.74 16 27 C 0.14 7.17 5.41 86.51 0.47 7.64 16 28 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.10 1.86 5.58 -2.39 -0.01 1.84 16 34 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.42 8.83 6.31 -92.71 -0.59 8.24 16 36 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.26 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 40 H 0.11 4.51 6.40 -2.91 -0.02 4.49 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 4.49 5.18 -2.39 -0.01 4.48 16 Total: -1.00 -81.47 342.31 3.87 -77.59 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.47 Total: 22.24 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.43 Total: -3.20 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -3.90 Total: -105.41 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.16 Total: -37.87 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -81.47 3.87 -77.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529277747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.138 kcal (2) G-P(sol) polarization free energy of solvation -81.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds