Wall clock time and date at job start Tue Mar 31 2020 11:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47228 * 163.13767 * 3 2 1 5 5 N 1.46497 * 109.47436 * 179.97438 * 4 3 2 6 6 C 1.46502 * 119.99947 * 270.00275 * 5 4 3 7 7 C 1.50698 * 109.46679 * 269.99496 * 6 5 4 8 8 H 1.07994 * 120.00470 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99800 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99762 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00075 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47180 * 90.00330 * 11 9 7 13 13 H 1.48505 * 109.47311 * 210.00098 * 11 9 7 14 14 H 1.48494 * 109.47535 * 330.00312 * 11 9 7 15 15 C 1.34784 * 119.99934 * 89.99851 * 5 4 3 16 16 O 1.21271 * 119.99851 * 179.97438 * 15 5 4 17 17 C 1.50694 * 119.99575 * 0.02562 * 15 5 4 18 18 C 1.50708 * 109.47053 * 179.97438 * 17 15 5 19 19 C 1.38261 * 119.97948 * 270.02600 * 18 17 15 20 20 C 1.38295 * 120.04146 * 179.97438 * 19 18 17 21 21 C 1.37831 * 119.96871 * 359.96675 * 20 19 18 22 22 C 1.38773 * 120.01371 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.01385 * 0.02562 * 22 21 20 24 24 C 1.51082 * 107.29752 * 180.02562 * 22 21 20 25 25 O 1.43951 * 105.95349 * 342.32532 * 24 22 21 26 26 C 1.43941 * 104.94972 * 28.44560 * 25 24 22 27 27 H 1.08997 * 109.47441 * 43.13839 * 3 2 1 28 28 H 1.08995 * 109.47431 * 283.13500 * 3 2 1 29 29 H 1.08997 * 109.46851 * 59.99710 * 4 3 2 30 30 H 1.08995 * 109.46696 * 300.00183 * 4 3 2 31 31 H 1.08998 * 109.47085 * 30.00154 * 6 5 4 32 32 H 1.08995 * 109.46756 * 150.00068 * 6 5 4 33 33 H 0.97006 * 119.99816 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47590 * 59.99909 * 17 15 5 35 35 H 1.08998 * 109.47556 * 299.99555 * 17 15 5 36 36 H 1.08005 * 119.97619 * 359.97172 * 19 18 17 37 37 H 1.08004 * 120.04045 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.03936 * 179.97438 * 23 22 21 39 39 H 1.09005 * 110.15139 * 223.20795 * 24 22 21 40 40 H 1.08990 * 110.15650 * 101.44695 * 24 22 21 41 41 H 1.09002 * 110.15431 * 90.68060 * 26 25 24 42 42 H 1.09004 * 110.15347 * 212.36657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1174 1.3814 -0.4184 5 7 4.5823 1.3823 -0.4179 6 6 5.3141 1.7509 0.7966 7 6 5.5644 3.2369 0.8006 8 1 5.2132 3.8460 -0.0192 9 6 6.2410 3.8192 1.8514 10 7 6.6683 3.0776 2.8500 11 14 6.5507 5.6613 1.8568 12 1 5.4196 6.3515 2.5274 13 1 7.8103 5.9494 2.5887 14 1 6.6683 6.1476 0.4587 15 6 5.2569 1.0439 -1.5346 16 8 6.4696 1.0451 -1.5343 17 6 4.5040 0.6653 -2.7839 18 6 5.4839 0.3339 -3.8799 19 6 5.9330 1.3283 -4.7291 20 6 6.8326 1.0257 -5.7350 21 6 7.2821 -0.2680 -5.8904 22 6 6.8319 -1.2664 -5.0382 23 6 5.9336 -0.9646 -4.0354 24 6 7.5003 -2.5535 -5.4615 25 8 7.9863 -2.3262 -6.7973 26 6 8.2421 -0.9113 -6.8637 27 1 2.9716 -0.7490 -0.7026 28 1 2.9714 -0.2327 1.0007 29 1 2.7537 2.1311 0.2842 30 1 2.7539 1.6148 -1.4192 31 1 4.7249 1.4792 1.6724 32 1 6.2668 1.2219 0.8213 33 1 7.1440 3.4874 3.5895 34 1 3.8773 1.5000 -3.0976 35 1 3.8775 -0.2034 -2.5814 36 1 5.5809 2.3420 -4.6068 37 1 7.1830 1.8024 -6.3986 38 1 5.5826 -1.7414 -3.3723 39 1 6.7785 -3.3702 -5.4583 40 1 8.3307 -2.7827 -4.7937 41 1 9.2708 -0.7014 -6.5708 42 1 8.0567 -0.5431 -7.8728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542608537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:41 Heat of formation + Delta-G solvation = -22.062749 kcal Electronic energy + Delta-G solvation = -25148.367730 eV Core-core repulsion = 21479.688344 eV Total energy + Delta-G solvation = -3668.679387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75534 -39.39541 -37.51901 -36.83556 -35.25398 -33.13221 -32.55258 -31.53326 -30.87473 -29.19924 -27.75425 -26.64814 -24.39057 -24.01295 -22.78237 -21.77577 -20.83559 -18.55079 -17.64865 -16.72221 -16.63394 -16.48377 -16.46154 -16.16691 -15.69423 -15.07714 -14.77102 -14.56003 -14.34014 -14.18076 -13.77215 -13.58660 -13.20488 -13.07411 -12.70145 -12.63161 -12.50367 -12.44586 -12.28211 -12.02543 -11.86539 -11.63077 -11.41452 -11.27042 -11.01302 -10.91873 -10.83670 -10.63826 -10.22342 -10.17198 -9.74395 -9.15111 -8.82700 -8.50556 -8.41964 -7.88767 -6.11979 -4.16666 1.19689 1.35006 2.69803 2.78225 3.24452 3.26134 3.33499 3.37202 3.49310 3.73970 3.78021 4.10555 4.22564 4.39478 4.52911 4.76765 4.86714 4.93527 5.04815 5.14133 5.16268 5.22388 5.24475 5.24747 5.30032 5.39367 5.43506 5.47987 5.52595 5.61393 5.78617 5.86785 6.02663 6.05393 6.21653 6.29521 6.54553 6.60662 6.86616 6.94161 7.32277 7.39101 7.54427 7.83981 8.13879 8.21492 8.80176 8.94785 9.49027 10.96151 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.003756 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.567242 B = 7453.501859 C = 9313.940920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.245 3.755 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.509 3.491 16 O -0.523 6.523 17 C -0.109 4.109 18 C -0.049 4.049 19 C -0.098 4.098 20 C -0.091 4.091 21 C -0.140 4.140 22 C -0.134 4.134 23 C -0.078 4.078 24 C 0.093 3.907 25 O -0.365 6.365 26 C 0.093 3.907 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.795 -8.379 -14.869 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.330 5.330 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.295 3.705 16 O -0.399 6.399 17 C -0.149 4.149 18 C -0.049 4.049 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.140 4.140 22 C -0.134 4.134 23 C -0.097 4.097 24 C 0.016 3.984 25 O -0.284 6.284 26 C 0.017 3.983 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.675 -8.528 -14.839 17.505 hybrid contribution 0.572 1.311 0.465 1.504 sum -3.103 -7.217 -14.374 16.381 Atomic orbital electron populations 1.81211 1.13063 1.08672 1.09294 1.29102 0.95101 0.93088 0.92849 1.19907 0.81342 1.01598 1.06379 1.21315 0.82257 0.94508 1.02889 1.48226 1.04795 1.66203 1.13766 1.19343 0.92605 0.95868 0.79536 1.21409 1.36801 0.92739 1.05840 0.92394 1.24915 0.95275 0.98380 0.95385 1.69920 1.38282 1.35523 1.09485 0.86523 0.77733 0.85170 0.78163 1.20632 1.21094 1.19902 1.20170 0.88137 0.78141 0.84066 1.90721 1.13696 1.51987 1.83490 1.20845 0.97576 1.03603 0.92848 1.19307 0.97430 0.93014 0.95158 1.20990 0.97111 0.99015 0.94481 1.20252 0.97397 0.94624 0.98622 1.20955 0.99345 0.94760 0.98977 1.20944 0.98702 0.96352 0.97415 1.20159 0.96517 0.96284 0.96692 1.21726 0.97644 0.95033 0.83967 1.89051 1.85949 1.22998 1.30360 1.21706 0.97098 0.80623 0.98905 0.87593 0.86484 0.88744 0.90568 0.94745 0.93596 0.92656 0.88131 0.88422 0.85466 0.85859 0.85858 0.88653 0.90484 0.90640 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.31 18.54 42.15 0.78 -5.53 16 2 C 0.22 2.47 15.43 -20.76 -0.32 2.15 16 3 C -0.05 -0.49 6.03 -29.51 -0.18 -0.67 16 4 C 0.12 1.45 5.17 -4.04 -0.02 1.42 16 5 N -0.60 -10.41 2.46 -175.07 -0.43 -10.84 16 6 C 0.25 5.66 5.16 -5.19 -0.03 5.64 16 7 C -0.53 -13.88 9.39 -34.44 -0.32 -14.20 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 11 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.51 8.89 7.67 -10.99 -0.08 8.81 16 16 O -0.52 -11.85 15.61 5.56 0.09 -11.76 16 17 C -0.11 -1.31 4.38 -29.03 -0.13 -1.44 16 18 C -0.05 -0.64 4.38 -104.59 -0.46 -1.10 16 19 C -0.10 -1.27 9.70 -39.55 -0.38 -1.65 16 20 C -0.09 -1.09 10.03 -39.71 -0.40 -1.49 16 21 C -0.14 -1.71 6.33 -104.38 -0.66 -2.37 16 22 C -0.13 -1.67 6.33 -104.34 -0.66 -2.33 16 23 C -0.08 -0.99 9.70 -39.66 -0.38 -1.38 16 24 C 0.09 0.98 7.63 36.19 0.28 1.26 16 25 O -0.36 -4.31 11.72 -35.23 -0.41 -4.72 16 26 C 0.09 0.96 7.63 36.19 0.28 1.24 16 27 H 0.11 0.79 7.22 -51.93 -0.38 0.41 16 28 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.08 0.76 6.44 -51.93 -0.33 0.42 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.10 1.02 7.35 -51.93 -0.38 0.64 16 35 H 0.10 0.87 7.13 -51.93 -0.37 0.50 16 36 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -34.01 365.58 -7.93 -41.95 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.61 Total: -1.57 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.57 Total: -4.50 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 1.09 Total: -40.87 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.33 Total: -16.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.01 -7.93 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542608537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.883 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds