Wall clock time and date at job start Tue Mar 31 2020 11:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47228 * 163.13767 * 3 2 1 5 5 N 1.46497 * 109.47436 * 179.97438 * 4 3 2 6 6 C 1.46502 * 119.99947 * 270.00275 * 5 4 3 7 7 C 1.50698 * 109.46679 * 269.99496 * 6 5 4 8 8 H 1.07994 * 120.00470 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99800 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99762 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00075 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47180 * 90.00330 * 11 9 7 13 13 H 1.48505 * 109.47311 * 210.00098 * 11 9 7 14 14 H 1.48494 * 109.47535 * 330.00312 * 11 9 7 15 15 C 1.34784 * 119.99934 * 89.99851 * 5 4 3 16 16 O 1.21271 * 119.99851 * 179.97438 * 15 5 4 17 17 C 1.50694 * 119.99575 * 0.02562 * 15 5 4 18 18 C 1.50708 * 109.47053 * 179.97438 * 17 15 5 19 19 C 1.38261 * 119.97948 * 270.02600 * 18 17 15 20 20 C 1.38295 * 120.04146 * 179.97438 * 19 18 17 21 21 C 1.37831 * 119.96871 * 359.96675 * 20 19 18 22 22 C 1.38773 * 120.01371 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.01385 * 0.02562 * 22 21 20 24 24 C 1.51082 * 107.29752 * 180.02562 * 22 21 20 25 25 O 1.43951 * 105.95349 * 342.32532 * 24 22 21 26 26 C 1.43941 * 104.94972 * 28.44560 * 25 24 22 27 27 H 1.08997 * 109.47441 * 43.13839 * 3 2 1 28 28 H 1.08995 * 109.47431 * 283.13500 * 3 2 1 29 29 H 1.08997 * 109.46851 * 59.99710 * 4 3 2 30 30 H 1.08995 * 109.46696 * 300.00183 * 4 3 2 31 31 H 1.08998 * 109.47085 * 30.00154 * 6 5 4 32 32 H 1.08995 * 109.46756 * 150.00068 * 6 5 4 33 33 H 0.97006 * 119.99816 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47590 * 59.99909 * 17 15 5 35 35 H 1.08998 * 109.47556 * 299.99555 * 17 15 5 36 36 H 1.08005 * 119.97619 * 359.97172 * 19 18 17 37 37 H 1.08004 * 120.04045 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.03936 * 179.97438 * 23 22 21 39 39 H 1.09005 * 110.15139 * 223.20795 * 24 22 21 40 40 H 1.08990 * 110.15650 * 101.44695 * 24 22 21 41 41 H 1.09002 * 110.15431 * 90.68060 * 26 25 24 42 42 H 1.09004 * 110.15347 * 212.36657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1174 1.3814 -0.4184 5 7 4.5823 1.3823 -0.4179 6 6 5.3141 1.7509 0.7966 7 6 5.5644 3.2369 0.8006 8 1 5.2132 3.8460 -0.0192 9 6 6.2410 3.8192 1.8514 10 7 6.6683 3.0776 2.8500 11 14 6.5507 5.6613 1.8568 12 1 5.4196 6.3515 2.5274 13 1 7.8103 5.9494 2.5887 14 1 6.6683 6.1476 0.4587 15 6 5.2569 1.0439 -1.5346 16 8 6.4696 1.0451 -1.5343 17 6 4.5040 0.6653 -2.7839 18 6 5.4839 0.3339 -3.8799 19 6 5.9330 1.3283 -4.7291 20 6 6.8326 1.0257 -5.7350 21 6 7.2821 -0.2680 -5.8904 22 6 6.8319 -1.2664 -5.0382 23 6 5.9336 -0.9646 -4.0354 24 6 7.5003 -2.5535 -5.4615 25 8 7.9863 -2.3262 -6.7973 26 6 8.2421 -0.9113 -6.8637 27 1 2.9716 -0.7490 -0.7026 28 1 2.9714 -0.2327 1.0007 29 1 2.7537 2.1311 0.2842 30 1 2.7539 1.6148 -1.4192 31 1 4.7249 1.4792 1.6724 32 1 6.2668 1.2219 0.8213 33 1 7.1440 3.4874 3.5895 34 1 3.8773 1.5000 -3.0976 35 1 3.8775 -0.2034 -2.5814 36 1 5.5809 2.3420 -4.6068 37 1 7.1830 1.8024 -6.3986 38 1 5.5826 -1.7414 -3.3723 39 1 6.7785 -3.3702 -5.4583 40 1 8.3307 -2.7827 -4.7937 41 1 9.2708 -0.7014 -6.5708 42 1 8.0567 -0.5431 -7.8728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542608537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:40 Heat of formation + Delta-G solvation = -42.602054 kcal Electronic energy + Delta-G solvation = -25149.258381 eV Core-core repulsion = 21479.688344 eV Total energy + Delta-G solvation = -3669.570038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65265 -40.68231 -38.45782 -37.89102 -36.61600 -34.89409 -33.69471 -32.41204 -32.11172 -30.31218 -29.00680 -27.90826 -25.44364 -25.26426 -24.27169 -22.63405 -21.85603 -19.84218 -18.78683 -18.30710 -17.86204 -17.58722 -17.34208 -17.16964 -16.87736 -16.41414 -15.92179 -15.75851 -15.57838 -15.18618 -14.80136 -14.69289 -14.32422 -14.25227 -14.01916 -13.66205 -13.50800 -13.47586 -13.42931 -13.22295 -13.00026 -12.89421 -12.74932 -12.67438 -12.50862 -12.24723 -12.15049 -11.80978 -11.71338 -11.65258 -11.04147 -10.57347 -10.56012 -9.74677 -9.43936 -9.34810 -8.17006 -6.29004 0.26198 0.43846 1.39774 1.42212 1.51196 1.72573 1.87821 1.95529 2.30952 2.45188 2.75577 2.97868 3.14154 3.22485 3.25508 3.69063 3.81144 3.96131 4.03564 4.15548 4.16968 4.29759 4.43553 4.46650 4.47951 4.54648 4.61777 4.65756 4.68415 4.79505 4.88466 4.98236 5.10412 5.14383 5.18458 5.35247 5.36327 5.39225 5.62295 5.64072 5.73962 5.90675 6.02369 6.14937 6.64303 6.77849 6.85236 7.36563 7.57311 8.89538 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.003756 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.567242 B = 7453.501859 C = 9313.940920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.112 3.888 5 N -0.598 5.598 6 C 0.260 3.740 7 C -0.539 4.539 8 H 0.054 0.946 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.956 3.044 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.505 3.495 16 O -0.584 6.584 17 C -0.095 4.095 18 C -0.067 4.067 19 C -0.116 4.116 20 C -0.100 4.100 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.089 4.089 24 C 0.092 3.908 25 O -0.379 6.379 26 C 0.092 3.908 27 H 0.140 0.860 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.033 0.967 32 H 0.002 0.998 33 H 0.265 0.735 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -8.486 -16.322 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.013 4.013 5 N -0.329 5.329 6 C 0.139 3.861 7 C -0.578 4.578 8 H 0.072 0.928 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.782 3.218 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.294 3.706 16 O -0.464 6.464 17 C -0.134 4.134 18 C -0.067 4.067 19 C -0.134 4.134 20 C -0.118 4.118 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.107 4.107 24 C 0.016 3.984 25 O -0.298 6.298 26 C 0.016 3.984 27 H 0.158 0.842 28 H 0.136 0.864 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.864 -8.638 -16.308 19.085 hybrid contribution 0.967 1.326 0.893 1.868 sum -3.897 -7.312 -15.416 17.501 Atomic orbital electron populations 1.81258 1.14503 1.10183 1.10993 1.29166 0.94956 0.91628 0.91329 1.19857 0.79993 1.00695 1.07435 1.21548 0.78977 0.95924 1.04805 1.48089 1.06750 1.65861 1.12187 1.18771 0.91446 0.93774 0.82110 1.21773 1.36232 0.94371 1.05378 0.92751 1.25715 0.95297 1.02537 0.95273 1.70028 1.39271 1.37198 1.10159 0.85584 0.77803 0.80389 0.78057 1.19244 1.21177 1.19816 1.21116 0.87706 0.76594 0.85160 1.90695 1.16643 1.54520 1.84548 1.20851 0.97171 1.06133 0.89246 1.19521 0.98205 0.93380 0.95629 1.21258 0.97621 0.99482 0.95019 1.20534 0.97161 0.95267 0.98812 1.21295 0.99609 0.94975 0.99429 1.21278 0.98849 0.97324 0.97537 1.20437 0.96578 0.96722 0.97008 1.21842 0.98117 0.94886 0.83577 1.89028 1.86104 1.23729 1.30928 1.21843 0.97023 0.79933 0.99620 0.84235 0.86386 0.90012 0.87110 0.94886 0.97981 0.92654 0.85581 0.84436 0.84824 0.83885 0.84189 0.86768 0.90060 0.89920 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.03 18.54 20.00 0.37 -12.65 16 2 C 0.25 4.97 15.43 89.44 1.38 6.35 16 3 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 4 C 0.11 2.48 5.17 86.38 0.45 2.93 16 5 N -0.60 -20.21 2.46 -826.18 -2.03 -22.24 16 6 C 0.26 12.26 5.16 85.63 0.44 12.70 16 7 C -0.54 -28.59 9.39 25.60 0.24 -28.35 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.01 0.59 5.46 84.65 0.46 1.05 16 10 N -0.93 -53.38 13.29 21.45 0.28 -53.09 16 11 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 C 0.51 17.11 7.67 87.65 0.67 17.78 16 16 O -0.58 -26.90 15.61 -3.00 -0.05 -26.95 16 17 C -0.09 -2.00 4.38 29.10 0.13 -1.87 16 18 C -0.07 -1.65 4.38 -19.84 -0.09 -1.74 16 19 C -0.12 -2.87 9.70 22.29 0.22 -2.65 16 20 C -0.10 -2.29 10.03 22.19 0.22 -2.07 16 21 C -0.15 -3.57 6.33 -19.71 -0.12 -3.69 16 22 C -0.15 -3.55 6.33 -19.68 -0.12 -3.68 16 23 C -0.09 -2.12 9.70 22.22 0.22 -1.91 16 24 C 0.09 1.82 7.63 71.36 0.54 2.37 16 25 O -0.38 -8.42 11.72 -148.98 -1.75 -10.16 16 26 C 0.09 1.77 7.63 71.36 0.54 2.32 16 27 H 0.14 1.41 7.22 -2.39 -0.02 1.39 16 28 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.06 8.07 -2.39 -0.02 2.04 16 30 H 0.11 1.73 6.44 -2.39 -0.02 1.72 16 31 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 32 H 0.00 0.11 7.42 -2.39 -0.02 0.10 16 33 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 34 H 0.13 2.04 7.35 -2.39 -0.02 2.03 16 35 H 0.14 1.77 7.13 -2.39 -0.02 1.76 16 36 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -76.84 365.58 5.25 -71.59 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.04 Total: 9.20 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.35 Total: -0.91 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.37 Total: -87.99 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -1.79 Total: -37.11 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -76.84 5.25 -71.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542608537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.987 kcal (2) G-P(sol) polarization free energy of solvation -76.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds