Wall clock time and date at job start Tue Mar 31 2020 11:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48495 * 109.47098 * 274.89247 * 3 2 1 5 5 H 1.48496 * 109.47208 * 34.89547 * 3 2 1 6 6 H 1.48502 * 109.46993 * 154.89455 * 3 2 1 7 7 C 1.39014 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99661 * 3.96339 * 7 2 1 9 9 N 1.36885 * 120.00096 * 183.95597 * 7 2 1 10 10 C 1.38212 * 125.61569 * 126.50105 * 9 7 2 11 11 C 1.46888 * 125.43788 * 359.71479 * 10 9 7 12 12 O 1.21671 * 119.99857 * 185.57008 * 11 10 9 13 13 N 1.34770 * 120.00070 * 5.57008 * 11 10 9 14 14 C 1.46505 * 119.99990 * 184.76193 * 13 11 10 15 15 H 1.08994 * 110.01968 * 29.74284 * 14 13 11 16 16 C 1.54266 * 110.03320 * 268.29748 * 14 13 11 17 17 C 1.54889 * 104.19621 * 217.10575 * 16 14 13 18 18 C 1.54887 * 102.74926 * 37.94490 * 17 16 14 19 19 C 1.53880 * 110.03226 * 151.13248 * 14 13 11 20 20 H 1.09009 * 110.02985 * 0.02562 * 19 14 13 21 21 O 1.42895 * 110.03402 * 238.56946 * 19 14 13 22 22 C 1.36122 * 109.12880 * 179.74020 * 10 9 7 23 23 C 1.41707 * 107.74528 * 359.97438 * 22 10 9 24 24 C 1.40023 * 133.34904 * 180.02562 * 23 22 10 25 25 C 1.36580 * 119.82867 * 180.02562 * 24 23 22 26 26 C 1.38857 * 120.60076 * 359.91818 * 25 24 23 27 27 C 1.37845 * 120.63255 * 0.03796 * 26 25 24 28 28 C 1.37836 * 125.62474 * 306.19524 * 9 7 2 29 29 H 0.96999 * 119.99400 * 5.00374 * 1 2 3 30 30 H 0.97004 * 119.99976 * 4.76777 * 13 11 10 31 31 H 1.09003 * 110.48497 * 335.78783 * 16 14 13 32 32 H 1.08999 * 110.48347 * 98.42943 * 16 14 13 33 33 H 1.08993 * 110.75467 * 279.62981 * 17 16 14 34 34 H 1.09005 * 110.91028 * 156.33244 * 17 16 14 35 35 H 1.08993 * 110.48468 * 203.37822 * 18 17 16 36 36 H 1.09002 * 110.59893 * 80.78825 * 18 17 16 37 37 H 0.96699 * 114.00068 * 179.97438 * 21 19 14 38 38 H 1.07999 * 126.12900 * 180.02562 * 22 10 9 39 39 H 1.07993 * 120.08928 * 359.94779 * 24 23 22 40 40 H 1.07996 * 119.70163 * 179.97438 * 25 24 23 41 41 H 1.07996 * 119.68207 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.09260 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3917 2.1060 -1.3949 5 1 1.5006 2.6205 0.8009 6 1 3.5930 1.4124 0.5940 7 6 2.0086 -1.2039 0.0005 8 1 1.4704 -2.1381 -0.0637 9 7 3.3750 -1.2053 0.0823 10 6 4.1251 -1.9049 1.0087 11 6 3.5830 -2.7637 2.0699 12 8 4.3292 -3.2542 2.8962 13 7 2.2589 -3.0083 2.1283 14 6 1.7047 -3.7779 3.2449 15 1 2.3102 -3.6277 4.1386 16 6 1.6587 -5.2767 2.8823 17 6 0.3451 -5.7835 3.5279 18 6 -0.6254 -4.5972 3.3047 19 6 0.2524 -3.3459 3.5134 20 1 -0.0401 -2.5638 2.8126 21 8 0.1221 -2.8750 4.8563 22 6 5.4466 -1.6706 0.7811 23 6 5.5450 -0.7931 -0.3272 24 6 6.6270 -0.2160 -1.0032 25 6 6.4008 0.6123 -2.0653 26 6 5.1058 0.8876 -2.4838 27 6 4.0246 0.3307 -1.8349 28 6 4.2298 -0.5141 -0.7492 29 1 -0.4849 0.8369 -0.0733 30 1 1.6729 -2.6748 1.4309 31 1 1.6270 -5.4067 1.8005 32 1 2.5174 -5.7980 3.3052 33 1 0.4857 -5.9726 4.5921 34 1 -0.0166 -6.6789 3.0224 35 1 -1.4334 -4.6226 4.0357 36 1 -1.0278 -4.6162 2.2918 37 1 -0.7717 -2.5872 5.0872 38 1 6.2721 -2.0807 1.3438 39 1 7.6377 -0.4244 -0.6848 40 1 7.2369 1.0566 -2.5849 41 1 4.9441 1.5444 -3.3257 42 1 3.0210 0.5510 -2.1676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590895585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:35 Heat of formation + Delta-G solvation = -25.622187 kcal Electronic energy + Delta-G solvation = -26635.762490 eV Core-core repulsion = 22966.928755 eV Total energy + Delta-G solvation = -3668.833735 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90444 -39.37338 -37.84091 -36.24299 -34.98297 -33.73861 -32.93601 -31.50306 -29.42815 -28.65459 -27.71175 -26.96807 -24.98016 -23.19551 -21.21787 -20.86874 -20.61969 -19.98103 -19.29635 -18.47151 -17.17793 -16.44620 -15.97392 -15.91778 -15.39434 -15.10099 -14.73599 -14.55681 -14.21175 -13.94566 -13.44790 -13.35081 -13.27455 -13.03185 -12.65701 -12.48264 -12.36385 -12.09667 -12.00694 -11.63156 -11.49503 -11.09520 -11.03383 -10.88557 -10.59093 -10.57501 -10.45410 -10.22857 -10.06721 -9.82503 -9.45646 -9.38231 -8.81697 -8.53028 -7.39279 -7.08485 -6.88180 -4.90308 1.51586 2.40042 2.77711 2.96081 3.08995 3.19528 3.65111 3.83030 4.06666 4.13351 4.38006 4.46235 4.64519 4.69742 4.85233 5.07284 5.43052 5.48144 5.56280 5.57190 5.60680 5.68763 5.72299 5.83221 5.84248 5.92612 6.02065 6.09982 6.15030 6.15232 6.29402 6.34521 6.43660 6.53619 6.67055 6.73916 7.06845 7.13304 7.17352 7.24349 7.48805 7.54306 7.60037 7.77675 7.99430 8.22632 8.52595 8.88578 8.96175 10.03534 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.005063 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.544102 B = 5528.614667 C = 6632.741785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.088 3.912 3 Si 0.882 3.118 4 H -0.256 1.256 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.374 4.374 8 H 0.119 0.881 9 N -0.289 5.289 10 C 0.001 3.999 11 C 0.596 3.404 12 O -0.554 6.554 13 N -0.716 5.716 14 C 0.146 3.854 15 H 0.099 0.901 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.154 4.154 19 C 0.090 3.910 20 H 0.074 0.926 21 O -0.562 6.562 22 C -0.157 4.157 23 C -0.127 4.127 24 C -0.071 4.071 25 C -0.163 4.163 26 C -0.120 4.120 27 C -0.123 4.123 28 C 0.079 3.921 29 H 0.287 0.713 30 H 0.418 0.582 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.376 0.624 38 H 0.140 0.860 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -3.702 1.297 3.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.126 4.126 3 Si 0.707 3.293 4 H -0.181 1.181 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.500 4.500 8 H 0.136 0.864 9 N 0.045 4.955 10 C -0.113 4.113 11 C 0.384 3.616 12 O -0.433 6.433 13 N -0.376 5.376 14 C 0.040 3.960 15 H 0.117 0.883 16 C -0.170 4.170 17 C -0.157 4.157 18 C -0.192 4.192 19 C 0.031 3.969 20 H 0.092 0.908 21 O -0.367 6.367 22 C -0.184 4.184 23 C -0.132 4.132 24 C -0.090 4.090 25 C -0.182 4.182 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.034 4.034 29 H 0.098 0.902 30 H 0.265 0.735 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.223 0.777 38 H 0.158 0.842 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.205 -4.112 1.993 4.574 hybrid contribution -0.831 1.189 -0.513 1.539 sum -1.036 -2.923 1.479 3.436 Atomic orbital electron populations 1.69572 1.06226 1.30075 1.40691 1.25512 0.95461 0.99638 0.91993 0.86765 0.81315 0.81363 0.79872 1.18076 1.21243 1.16875 1.19035 0.77508 0.96155 1.57340 0.86401 1.40241 1.04845 1.32228 1.18232 1.20350 0.91624 1.04286 0.95030 1.17185 0.82033 0.79082 0.83278 1.90729 1.58813 1.52531 1.41212 1.46771 1.08677 1.55193 1.26912 1.21354 0.93068 0.90193 0.91387 0.88268 1.22773 0.97955 0.94985 1.01318 1.22421 0.94970 0.97377 1.00931 1.23053 0.98069 0.95657 1.02390 1.22690 0.94859 0.95233 0.84164 0.90779 1.86509 1.35005 1.85648 1.29566 1.20531 0.94287 1.03434 1.00143 1.18050 0.92548 1.02977 0.99601 1.20219 0.96865 0.96690 0.95182 1.20377 0.96259 1.02256 0.99339 1.20626 0.92185 1.01053 1.00125 1.20227 0.99474 0.98736 0.95856 1.18532 0.89721 1.00343 0.94791 0.90199 0.73492 0.90919 0.90817 0.91216 0.91479 0.91069 0.90498 0.77700 0.84231 0.86953 0.87095 0.86822 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.46 13.95 55.50 0.77 -19.69 16 2 C 0.09 2.14 5.49 -17.47 -0.10 2.05 16 3 Si 0.88 20.05 23.54 -169.99 -4.00 16.05 16 4 H -0.26 -5.47 6.07 56.52 0.34 -5.13 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.25 -6.02 6.25 56.52 0.35 -5.66 16 7 C -0.37 -9.03 8.30 -15.01 -0.12 -9.15 16 8 H 0.12 2.87 6.45 -52.49 -0.34 2.53 16 9 N -0.29 -6.87 2.41 -56.08 -0.14 -7.00 16 10 C 0.00 0.02 6.77 -82.25 -0.56 -0.53 16 11 C 0.60 13.38 7.76 -12.76 -0.10 13.28 16 12 O -0.55 -13.13 16.48 5.21 0.09 -13.05 16 13 N -0.72 -14.37 4.88 -53.96 -0.26 -14.63 16 14 C 0.15 2.53 3.09 -66.81 -0.21 2.32 16 15 H 0.10 1.93 7.33 -51.93 -0.38 1.55 16 16 C -0.13 -1.93 6.53 -25.07 -0.16 -2.09 16 17 C -0.12 -1.42 6.91 -24.74 -0.17 -1.59 16 18 C -0.15 -1.86 6.56 -25.07 -0.16 -2.03 16 19 C 0.09 1.37 4.03 -25.61 -0.10 1.27 16 20 H 0.07 1.26 7.67 -51.92 -0.40 0.86 16 21 O -0.56 -8.29 13.21 -35.23 -0.47 -8.76 16 22 C -0.16 -3.43 10.55 -39.02 -0.41 -3.84 16 23 C -0.13 -2.74 6.16 -106.89 -0.66 -3.40 16 24 C -0.07 -1.30 10.06 -39.51 -0.40 -1.69 16 25 C -0.16 -2.77 9.97 -39.95 -0.40 -3.17 16 26 C -0.12 -2.17 10.02 -39.50 -0.40 -2.57 16 27 C -0.12 -2.62 6.88 -39.41 -0.27 -2.89 16 28 C 0.08 1.83 4.57 -83.84 -0.38 1.45 16 29 H 0.29 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.42 8.65 4.26 -40.82 -0.17 8.47 16 31 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.38 3.80 9.11 45.56 0.41 4.21 16 38 H 0.14 2.78 8.06 -52.49 -0.42 2.35 16 39 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.12 2.59 5.72 -52.49 -0.30 2.29 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -28.31 337.31 -8.16 -36.47 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -4.64 Total: 18.11 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -4.60 Total: -12.59 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.38 Total: -41.32 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.38 Total: -21.81 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.00 Total: 16.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.31 -8.16 -36.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590895585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.849 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds